MELO3C013557 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013557
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTrifunctional enzyme subunit beta, mitochondrial
Locationchr11 : 16648422 .. 16648574 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGAGGTAGACCTCGAAAGCACCCTGATGCAAAAGCTAGTAATGCTGCTAGAGAAGCAGGGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCACGTTGAGGGGAACATGGAAGAACAATTGCTTGATAGATTGGCTTAA

mRNA sequence

ATGCCTCGAGGTAGACCTCGAAAGCACCCTGATGCAAAAGCTAGTAATGCTGCTAGAGAAGCAGGGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCACGTTGAGGGGAACATGGAAGAACAATTGCTTGATAGATTGGCTTAA

Coding sequence (CDS)

ATGCCTCGAGGTAGACCTCGAAAGCACCCTGATGCAAAAGCTAGTAATGCTGCTAGAGAAGCAGGGATGGGAAGTGGGGAGTCTGATGCCGAATCTAGTCGCCCTCACGTTGAGGGGAACATGGAAGAACAATTGCTTGATAGATTGGCTTAA

Protein sequence

MPRGRPRKHPDAKASNAAREAGMGSGESDAESSRPHVEGNMEEQLLDRLA*
Homology
[Close]
BLAST of MELO3C013557 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 1  MPRGRPRKHPDAKASNAAREAGMGSGESDAESSRPHVEGNMEEQLLDRLA 51
          MPRGRPRKHPDAK SNAAREA MGSGESDAESSRPHVEGNMEEQLLDRLA
Sbjct: 20 MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLA 69

[Close]
BLAST of MELO3C013557 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 8.5e-14
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1 

Query: 1  MPRGRPRKHPDAKASNAAREAGMGSGESDAESSRPHVEGNMEEQLLDRLA 51
          MPRGRPRK P A+ASNAAREA M S E DAESSRPHVEGN+EEQLLDRLA
Sbjct: 1  MPRGRPRKRPVAEASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLA 50

[Close]
BLAST of MELO3C013557 vs. NCBI nr
Match: gi|659129924|ref|XP_008464914.1| (PREDICTED: uncharacterized protein LOC103502672 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-08
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 

Query: 1  MPRGRPRKHPDAKASNAAREAGMGSGESDAESSRPHV 38
          MPRGRPRKHPD + SNAARE  +GSGESDAESSRP +
Sbjct: 41 MPRGRPRKHPDVEVSNAAREVAIGSGESDAESSRPQI 77

The following BLAST results are available for this feature:
BLAST of MELO3C013557 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|1.2e-1896.00PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|8.5e-1484.00PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|659129924|ref|XP_008464914.1|2.4e-0878.38PREDICTED: uncharacterized protein LOC103502672 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013557T1MELO3C013557T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013557Cucumber (Gy14) v1cgymeB178
MELO3C013557Cucumber (Gy14) v1cgymeB179
MELO3C013557Cucurbita maxima (Rimu)cmameB543
MELO3C013557Cucurbita moschata (Rifu)cmomeB490
MELO3C013557Cucurbita moschata (Rifu)cmomeB532
MELO3C013557Wild cucumber (PI 183967)cpimeB419
MELO3C013557Wild cucumber (PI 183967)cpimeB442
MELO3C013557Cucumber (Chinese Long) v2cumeB425
MELO3C013557Cucumber (Chinese Long) v2cumeB451
MELO3C013557Cucurbita pepo (Zucchini)cpemeB266
MELO3C013557Cucurbita pepo (Zucchini)cpemeB677
MELO3C013557Bottle gourd (USVL1VR-Ls)lsimeB051
MELO3C013557Bottle gourd (USVL1VR-Ls)lsimeB058
MELO3C013557Cucumber (Gy14) v2cgybmeB367
MELO3C013557Cucumber (Gy14) v2cgybmeB388
MELO3C013557Silver-seed gourdcarmeB0032
MELO3C013557Silver-seed gourdcarmeB0342
MELO3C013557Cucumber (Chinese Long) v3cucmeB431
MELO3C013557Cucumber (Chinese Long) v3cucmeB453
MELO3C013557Wax gourdmewgoB120
MELO3C013557Wax gourdmewgoB126