MELO3C013508T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C013508T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_11
Locationchr11 : 15419598 .. 15420152 (+)
Sequence length555
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGTGCTGTACCTTCCGACCGTTTGACCTACTCCTCGCTGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCAGAAGGAGAAGAGCAACAGCCGTGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGATAGAGAAAAACAGTGGCAATAAAGAACCTGAAGTCAATGCTGTTTGTTCTCCCAAAATTCCATTTGTCAACAGCTCCCTAAATGAATTAAATGCCGCCAATAAGAAAGAATCCAACTTGATGAATCCCACAAAAGCAGCATGCAGAGGATCTCATGGGTTCTGGTATGCCATCGAGGAAGAGGAGGAGATGGGGCCACAAATATTAAAGGTAATGGCTCTCTCTCCCCTCTTAACGAAGCACTCCAACAGCCTACCTCTCTGGGCAACAAAAACAAACGTAAGTTTAAAGGCAAAAAGGACCAAACAGAAAATCCCGTCCAAACAGTGGTTAAGGACCTCCAGAAATTCGAGAACTACCAGAAATTCTACATCAAAGGAAGAACTTCATTCCAAAATGCTTGGACTGCCCTCCTGA

mRNA sequence

ATGGCTGGTGCTGTACCTTCCGACCGTTTGACCTACTCCTCGCTGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCAGAAGGAGAAGAGCAACAGCCGTGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGATAGAGAAAAACAGTGGCAATAAAGAACCTGAAGTCAATGCTGTTTGTTCTCCCAAAATTCCATTTGTCAACAGCTCCCTAAATGAATTAAATGCCGCCAATAAGAAAGAATCCAACTTGATGAATCCCACAAAAGCAGCATGCAGAGGATCTCATGGGTTCTGGTATGCCATCGAGGAAGAGGAGGAGATGGGGCCACAAATATTAAAGGTAATGGCTCTCTCTCCCCTCTTAACGAAGCACTCCAACAGCCTACCTCTCTGGGCAACAAAAACAAACGTAAGTTTAAAGGCAAAAAGGACCAAACAGAAAATCCCGTCCAAACAGTGGTTAAGGACCTCCAGAAATTCGAGAACTACCAGAAATTCTACATCAAAGGAAGAACTTCATTCCAAAATGCTTGGACTGCCCTCCTGA

Coding sequence (CDS)

ATGGCTGGTGCTGTACCTTCCGACCGTTTGACCTACTCCTCGCTGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCAGAAGGAGAAGAGCAACAGCCGTGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGATAGAGAAAAACAGTGGCAATAAAGAACCTGAAGTCAATGCTGTTTGTTCTCCCAAAATTCCATTTGTCAACAGCTCCCTAAATGAATTAAATGCCGCCAATAAGAAAGAATCCAACTTGATGAATCCCACAAAAGCAGCATGCAGAGGATCTCATGGGTTCTGGTATGCCATCGAGGAAGAGGAGGAGATGGGGCCACAAATATTAAAGGTAATGGCTCTCTCTCCCCTCTTAACGAAGCACTCCAACAGCCTACCTCTCTGGGCAACAAAAACAAACGTAAGTTTAAAGGCAAAAAGGACCAAACAGAAAATCCCGTCCAAACAGTGGTTAAGGACCTCCAGAAATTCGAGAACTACCAGAAATTCTACATCAAAGGAAGAACTTCATTCCAAAATGCTTGGACTGCCCTCCTGA

Protein sequence

MAGAVPSDRLTYSSLEKKEHNKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPFVNSSLNELNAANKKESNLMNPTKAACRGSHGFWYAIEEEEEMGPQILKVMALSPLLTKHSNSLPLWATKTNVSLKAKRTKQKIPSKQWLRTSRNSRTTRNSTSKEELHSKMLGLPS*
Homology
[Close]
BLAST of MELO3C013508T1 vs. TrEMBL
Match: A0A0A0L3L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-36
Identity = 102/226 (45.13%), Postives = 118/226 (52.21%), Query Frame = 1 

Query: 1   MAGAVPSDRLTYSSLEKKEHNKRQNSNSEG------------------------------ 60
           MAGAV  DR  YS  EKKEHNKRQNSNS G                              
Sbjct: 18  MAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDLWRKEKNSGNKESEVNAF 77

Query: 61  ----------------------EEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPF 120
                                 EEQQP VGKEAKDLWR EKNSGNK+ +VNAVCS KIPF
Sbjct: 78  CSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNSGNKKSKVNAVCSSKIPF 137

Query: 121 VNSSLNELNAANKKESNLMNPTKAACRGSHGFWYAIEEEEEMGPQILKVMALSPLLTKHS 175
           VNSSLNEL   NKKESNL+ PTKA C+GS GFWY+ +EEEEMGP  +K           S
Sbjct: 138 VNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMGPTNIK--------DNGS 197

[Close]
BLAST of MELO3C013508T1 vs. TrEMBL
Match: A0A0A0LCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1 

Query: 17 KKEHNKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPFVNSSLNEL 76
          +K  NK QNSNS GEEQQP +GK+AKDLWR +KNSGNKE EVNAVCSPKIP VNSSLNEL
Sbjct: 37 EKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNEL 96

Query: 77 NAA 80
           AA
Sbjct: 97 TAA 99

[Close]
BLAST of MELO3C013508T1 vs. TrEMBL
Match: A0A0A0LCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 21  NKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAV 62
           N+   + S GEEQQP VGKEAKDLWR EKN GNKE +VNAV
Sbjct: 94  NELTAAKSVGEEQQPRVGKEAKDLWRKEKNGGNKESDVNAV 134


HSP 2 Score: 72.0 bits (175), Expect = 8.5e-10
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 

Query: 48  EKNSGNKEPEVNAVCSPKIPFVNSSLNELNAANKKESNLMNPTKAACRGSHGFWYA 104
           +++SGNK PEVNAVCS K P V+S LN+ NAANKK   L    K AC+G+HGFWYA
Sbjct: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGSHKTACKGTHGFWYA 66

[Close]
BLAST of MELO3C013508T1 vs. NCBI nr
Match: gi|700199573|gb|KGN54731.1| (hypothetical protein Csa_4G437510 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 5.8e-36
Identity = 102/226 (45.13%), Postives = 118/226 (52.21%), Query Frame = 1 

Query: 1   MAGAVPSDRLTYSSLEKKEHNKRQNSNSEG------------------------------ 60
           MAGAV  DR  YS  EKKEHNKRQNSNS G                              
Sbjct: 18  MAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDLWRKEKNSGNKESEVNAF 77

Query: 61  ----------------------EEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPF 120
                                 EEQQP VGKEAKDLWR EKNSGNK+ +VNAVCS KIPF
Sbjct: 78  CSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNSGNKKSKVNAVCSSKIPF 137

Query: 121 VNSSLNELNAANKKESNLMNPTKAACRGSHGFWYAIEEEEEMGPQILKVMALSPLLTKHS 175
           VNSSLNEL   NKKESNL+ PTKA C+GS GFWY+ +EEEEMGP  +K           S
Sbjct: 138 VNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMGPTNIK--------DNGS 197

[Close]
BLAST of MELO3C013508T1 vs. NCBI nr
Match: gi|700202563|gb|KGN57696.1| (hypothetical protein Csa_3G253530 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1 

Query: 17 KKEHNKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPFVNSSLNEL 76
          +K  NK QNSNS GEEQQP +GK+AKDLWR +KNSGNKE EVNAVCSPKIP VNSSLNEL
Sbjct: 37 EKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNEL 96

Query: 77 NAA 80
           AA
Sbjct: 97 TAA 99

[Close]
BLAST of MELO3C013508T1 vs. NCBI nr
Match: gi|700202563|gb|KGN57696.1| (hypothetical protein Csa_3G253530 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-06
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 21  NKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAV 62
           N+   + S GEEQQP VGKEAKDLWR EKN GNKE +VNAV
Sbjct: 94  NELTAAKSVGEEQQPRVGKEAKDLWRKEKNGGNKESDVNAV 134


HSP 2 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 

Query: 48  EKNSGNKEPEVNAVCSPKIPFVNSSLNELNAANKKESNLMNPTKAACRGSHGFWYA 104
           +++SGNK PEVNAVCS K P V+S LN+ NAANKK   L    K AC+G+HGFWYA
Sbjct: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGSHKTACKGTHGFWYA 66

The following BLAST results are available for this feature:
BLAST of MELO3C013508T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3L4_CUCSA4.0e-3645.13Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1[more]
A0A0A0LCB6_CUCSA2.9e-1879.37Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1[more]
A0A0A0LCB6_CUCSA3.3e-0670.73Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1[more]
BLAST of MELO3C013508T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199573|gb|KGN54731.1|5.8e-3645.13hypothetical protein Csa_4G437510 [Cucumis sativus][more]
gi|700202563|gb|KGN57696.1|4.2e-1879.37hypothetical protein Csa_3G253530 [Cucumis sativus][more]
gi|700202563|gb|KGN57696.1|4.8e-0670.73hypothetical protein Csa_3G253530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C013508MELO3C013508gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C013508T1MELO3C013508T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C013508T1.cds1MELO3C013508T1.cds1CDS