MELO3C013508 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013508
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_11
Location	chr11 : 15419598 .. 15420152 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGTGCTGTACCTTCCGACCGTTTGACCTACTCCTCGCTGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCAGAAGGAGAAGAGCAACAGCCGTGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGATAGAGAAAAACAGTGGCAATAAAGAACCTGAAGTCAATGCTGTTTGTTCTCCCAAAATTCCATTTGTCAACAGCTCCCTAAATGAATTAAATGCCGCCAATAAGAAAGAATCCAACTTGATGAATCCCACAAAAGCAGCATGCAGAGGATCTCATGGGTTCTGGTATGCCATCGAGGAAGAGGAGGAGATGGGGCCACAAATATTAAAGGTAATGGCTCTCTCTCCCCTCTTAACGAAGCACTCCAACAGCCTACCTCTCTGGGCAACAAAAACAAACGTAAGTTTAAAGGCAAAAAGGACCAAACAGAAAATCCCGTCCAAACAGTGGTTAAGGACCTCCAGAAATTCGAGAACTACCAGAAATTCTACATCAAAGGAAGAACTTCATTCCAAAATGCTTGGACTGCCCTCCTGA

mRNA sequence

ATGGCTGGTGCTGTACCTTCCGACCGTTTGACCTACTCCTCGCTGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCAGAAGGAGAAGAGCAACAGCCGTGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGATAGAGAAAAACAGTGGCAATAAAGAACCTGAAGTCAATGCTGTTTGTTCTCCCAAAATTCCATTTGTCAACAGCTCCCTAAATGAATTAAATGCCGCCAATAAGAAAGAATCCAACTTGATGAATCCCACAAAAGCAGCATGCAGAGGATCTCATGGGTTCTGGTATGCCATCGAGGAAGAGGAGGAGATGGGGCCACAAATATTAAAGGTAATGGCTCTCTCTCCCCTCTTAACGAAGCACTCCAACAGCCTACCTCTCTGGGCAACAAAAACAAACGTAAGTTTAAAGGCAAAAAGGACCAAACAGAAAATCCCGTCCAAACAGTGGTTAAGGACCTCCAGAAATTCGAGAACTACCAGAAATTCTACATCAAAGGAAGAACTTCATTCCAAAATGCTTGGACTGCCCTCCTGA

Coding sequence (CDS)

ATGGCTGGTGCTGTACCTTCCGACCGTTTGACCTACTCCTCGCTGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCAGAAGGAGAAGAGCAACAGCCGTGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGATAGAGAAAAACAGTGGCAATAAAGAACCTGAAGTCAATGCTGTTTGTTCTCCCAAAATTCCATTTGTCAACAGCTCCCTAAATGAATTAAATGCCGCCAATAAGAAAGAATCCAACTTGATGAATCCCACAAAAGCAGCATGCAGAGGATCTCATGGGTTCTGGTATGCCATCGAGGAAGAGGAGGAGATGGGGCCACAAATATTAAAGGTAATGGCTCTCTCTCCCCTCTTAACGAAGCACTCCAACAGCCTACCTCTCTGGGCAACAAAAACAAACGTAAGTTTAAAGGCAAAAAGGACCAAACAGAAAATCCCGTCCAAACAGTGGTTAAGGACCTCCAGAAATTCGAGAACTACCAGAAATTCTACATCAAAGGAAGAACTTCATTCCAAAATGCTTGGACTGCCCTCCTGA

Protein sequence

MAGAVPSDRLTYSSLEKKEHNKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPFVNSSLNELNAANKKESNLMNPTKAACRGSHGFWYAIEEEEEMGPQILKVMALSPLLTKHSNSLPLWATKTNVSLKAKRTKQKIPSKQWLRTSRNSRTTRNSTSKEELHSKMLGLPS*

Homology

[Close]

BLAST of MELO3C013508 vs. TrEMBL
Match: A0A0A0L3L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-36
Identity = 102/226 (45.13%), Postives = 118/226 (52.21%), Query Frame = 1


Query: 1   MAGAVPSDRLTYSSLEKKEHNKRQNSNSEG------------------------------ 60
           MAGAV  DR  YS  EKKEHNKRQNSNS G                              
Sbjct: 18  MAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDLWRKEKNSGNKESEVNAF 77

Query: 61  ----------------------EEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPF 120
                                 EEQQP VGKEAKDLWR EKNSGNK+ +VNAVCS KIPF
Sbjct: 78  CSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNSGNKKSKVNAVCSSKIPF 137

Query: 121 VNSSLNELNAANKKESNLMNPTKAACRGSHGFWYAIEEEEEMGPQILKVMALSPLLTKHS 175
           VNSSLNEL   NKKESNL+ PTKA C+GS GFWY+ +EEEEMGP  +K           S
Sbjct: 138 VNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMGPTNIK--------DNGS 197

[Close]

BLAST of MELO3C013508 vs. TrEMBL
Match: A0A0A0LCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 17 KKEHNKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPFVNSSLNEL 76
          +K  NK QNSNS GEEQQP +GK+AKDLWR +KNSGNKE EVNAVCSPKIP VNSSLNEL
Sbjct: 37 EKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNEL 96

Query: 77 NAA 80
           AA
Sbjct: 97 TAA 99

[Close]

BLAST of MELO3C013508 vs. TrEMBL
Match: A0A0A0LCB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 21  NKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAV 62
           N+   + S GEEQQP VGKEAKDLWR EKN GNKE +VNAV
Sbjct: 94  NELTAAKSVGEEQQPRVGKEAKDLWRKEKNGGNKESDVNAV 134

HSP 2 Score: 72.0 bits (175), Expect = 8.5e-10
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 48  EKNSGNKEPEVNAVCSPKIPFVNSSLNELNAANKKESNLMNPTKAACRGSHGFWYA 104
           +++SGNK PEVNAVCS K P V+S LN+ NAANKK   L    K AC+G+HGFWYA
Sbjct: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGSHKTACKGTHGFWYA 66

[Close]

BLAST of MELO3C013508 vs. NCBI nr
Match: gi|700199573|gb|KGN54731.1| (hypothetical protein Csa_4G437510 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 5.8e-36
Identity = 102/226 (45.13%), Postives = 118/226 (52.21%), Query Frame = 1


Query: 1   MAGAVPSDRLTYSSLEKKEHNKRQNSNSEG------------------------------ 60
           MAGAV  DR  YS  EKKEHNKRQNSNS G                              
Sbjct: 18  MAGAVFFDRSAYSLPEKKEHNKRQNSNSVGDQQPRMGKEAKDLWRKEKNSGNKESEVNAF 77

Query: 61  ----------------------EEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPF 120
                                 EEQQP VGKEAKDLWR EKNSGNK+ +VNAVCS KIPF
Sbjct: 78  CSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRKEKNSGNKKSKVNAVCSSKIPF 137

Query: 121 VNSSLNELNAANKKESNLMNPTKAACRGSHGFWYAIEEEEEMGPQILKVMALSPLLTKHS 175
           VNSSLNEL   NKKESNL+ PTKA C+GS GFWY+ +EEEEMGP  +K           S
Sbjct: 138 VNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSNKEEEEMGPTNIK--------DNGS 197

[Close]

BLAST of MELO3C013508 vs. NCBI nr
Match: gi|700202563|gb|KGN57696.1| (hypothetical protein Csa_3G253530 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 1


Query: 17 KKEHNKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAVCSPKIPFVNSSLNEL 76
          +K  NK QNSNS GEEQQP +GK+AKDLWR +KNSGNKE EVNAVCSPKIP VNSSLNEL
Sbjct: 37 EKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNEL 96

Query: 77 NAA 80
           AA
Sbjct: 97 TAA 99

[Close]

BLAST of MELO3C013508 vs. NCBI nr
Match: gi|700202563|gb|KGN57696.1| (hypothetical protein Csa_3G253530 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 4.8e-06
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 21  NKRQNSNSEGEEQQPCVGKEAKDLWRIEKNSGNKEPEVNAV 62
           N+   + S GEEQQP VGKEAKDLWR EKN GNKE +VNAV
Sbjct: 94  NELTAAKSVGEEQQPRVGKEAKDLWRKEKNGGNKESDVNAV 134

HSP 2 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 48  EKNSGNKEPEVNAVCSPKIPFVNSSLNELNAANKKESNLMNPTKAACRGSHGFWYA 104
           +++SGNK PEVNAVCS K P V+S LN+ NAANKK   L    K AC+G+HGFWYA
Sbjct: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGSHKTACKGTHGFWYA 66

The following BLAST results are available for this feature:

BLAST of MELO3C013508 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3L4_CUCSA	4.0e-36	45.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1	[more]
A0A0A0LCB6_CUCSA	2.9e-18	79.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1	[more]
A0A0A0LCB6_CUCSA	3.3e-06	70.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G253530 PE=4 SV=1	[more]

BLAST of MELO3C013508 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199573\|gb\|KGN54731.1\|	5.8e-36	45.13	hypothetical protein Csa_4G437510 [Cucumis sativus]	[more]
gi\|700202563\|gb\|KGN57696.1\|	4.2e-18	79.37	hypothetical protein Csa_3G253530 [Cucumis sativus]	[more]
gi\|700202563\|gb\|KGN57696.1\|	4.8e-06	70.73	hypothetical protein Csa_3G253530 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013508T1	MELO3C013508T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013508	Cucumber (Chinese Long) v3	cucmeB431
MELO3C013508	Watermelon (97103) v2	mewmbB114
MELO3C013508	Wax gourd	mewgoB126
MELO3C013508	Cucumber (Gy14) v1	cgymeB179
MELO3C013508	Cucurbita maxima (Rimu)	cmameB553
MELO3C013508	Cucurbita moschata (Rifu)	cmomeB542
MELO3C013508	Wild cucumber (PI 183967)	cpimeB419
MELO3C013508	Cucumber (Chinese Long) v2	cumeB425
MELO3C013508	Cucurbita pepo (Zucchini)	cpemeB659
MELO3C013508	Bottle gourd (USVL1VR-Ls)	lsimeB051
MELO3C013508	Cucumber (Gy14) v2	cgybmeB367
MELO3C013508	Silver-seed gourd	carmeB0843