MELO3C013501T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C013501T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09
Locationchr11 : 15237028 .. 15237496 (+)
Sequence length399
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTGACAACGTGAAGGTATCAGTGGACATAGTTACCGATGGTAATTGCTTCGTTCCTGTTCAACCAAGGGAAGGTAGGACTATGCTTCCCCAAGAAGTTGGTTCACAGTTGTTATGGCCTCGTCATTTAGTCATTCCCCTAGACGAAAAGGTAATGTGTTTTTCATAATGGATTTGGTTTAAATATATTTCATATGGATGAGATTTTATGTTTGTGGCAGATGAAAAGCGTGTACCAAGCTGATCTGCGATTACCGTCGTTGACACTGAATACAAAGAGAACACCAGTTACACTACGATTATTGCTATGGGAACTTGATTATATTGGGTCAAAAATTCAAATTCACGAACCTGCTAAAGTTTTTTGGTATGAACGAAAATGTTGCATATTCCTCGAGGCACTCCAAGAATTTTGTCAAATGCAGCCTATATCAACCCAATGCATTGATGCATTCATTTTGTAA

mRNA sequence

ATGGATGGTGACAACGTGAAGGTATCAGTGGACATAGTTACCGATGGTAATTGCTTCGTTCCTGTTCAACCAAGGGAAGGTAGGACTATGCTTCCCCAAGAAGTTGGTTCACAGTTGTTATGGCCTCGTCATTTAGTCATTCCCCTAGACGAAAAGATGAAAAGCGTGTACCAAGCTGATCTGCGATTACCGTCGTTGACACTGAATACAAAGAGAACACCAGTTACACTACGATTATTGCTATGGGAACTTGATTATATTGGGTCAAAAATTCAAATTCACGAACCTGCTAAAGTTTTTTGGTATGAACGAAAATGTTGCATATTCCTCGAGGCACTCCAAGAATTTTGTCAAATGCAGCCTATATCAACCCAATGCATTGATGCATTCATTTTGTAA

Coding sequence (CDS)

ATGGATGGTGACAACGTGAAGGTATCAGTGGACATAGTTACCGATGGTAATTGCTTCGTTCCTGTTCAACCAAGGGAAGGTAGGACTATGCTTCCCCAAGAAGTTGGTTCACAGTTGTTATGGCCTCGTCATTTAGTCATTCCCCTAGACGAAAAGATGAAAAGCGTGTACCAAGCTGATCTGCGATTACCGTCGTTGACACTGAATACAAAGAGAACACCAGTTACACTACGATTATTGCTATGGGAACTTGATTATATTGGGTCAAAAATTCAAATTCACGAACCTGCTAAAGTTTTTTGGTATGAACGAAAATGTTGCATATTCCTCGAGGCACTCCAAGAATTTTGTCAAATGCAGCCTATATCAACCCAATGCATTGATGCATTCATTTTGTAA

Protein sequence

MDGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSVYQADLRLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLEALQEFCQMQPISTQCIDAFIL*
Homology
[Close]
BLAST of MELO3C013501T1 vs. TrEMBL
Match: A0A0A0KMP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065650 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.1e-14
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1 

Query: 1  MDGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMK---SVY 60
          MDGDNV + VD+V DG+C VP+  R+G TML QE+ SQLLWPRHLVIP DEK +      
Sbjct: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60

Query: 61 QADLRLPS 66
          QAD R PS
Sbjct: 61 QADERAPS 68

[Close]
BLAST of MELO3C013501T1 vs. TrEMBL
Match: A0A0A0KCE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211850 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 

Query: 2   DGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSV 57
           DG+N+KVSVD+V DG   +P   +EG T L  E+GS L+WPRHLV+  ++K  SV
Sbjct: 129 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKSYSV 183

[Close]
BLAST of MELO3C013501T1 vs. NCBI nr
Match: gi|659134106|ref|XP_008467031.1| (PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 9.9e-62
Identity = 118/131 (90.08%), Postives = 123/131 (93.89%), Query Frame = 1 

Query: 1   MDGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSVYQAD 60
           MDGDNVKVSVD+VTDGNCFVPV  REGRTML +EVGSQLLWPRHLVIPLDEKMKSVYQAD
Sbjct: 177 MDGDNVKVSVDMVTDGNCFVPVPTREGRTMLSEEVGSQLLWPRHLVIPLDEKMKSVYQAD 236

Query: 61  LRLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLEALQEFCQMQ 120
            RLPSLTLNTKR PVTLRLLLWEL+YIGSKI+IH PAKVF YERKCCIFLEALQEFCQMQ
Sbjct: 237 SRLPSLTLNTKRAPVTLRLLLWELNYIGSKIRIHVPAKVFGYERKCCIFLEALQEFCQMQ 296

Query: 121 PISTQCIDAFI 132
           PISTQCID F+
Sbjct: 297 PISTQCIDVFM 307

[Close]
BLAST of MELO3C013501T1 vs. NCBI nr
Match: gi|659105267|ref|XP_008453054.1| (PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 3.9e-34
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 1 

Query: 52  KMKSVYQADLRLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLE 111
           +MKSVYQAD RLPSLTLNTKR PVTLRLLLWELDYIGSKIQIH PAKVF YERKCCIFLE
Sbjct: 9   QMKSVYQADPRLPSLTLNTKRAPVTLRLLLWELDYIGSKIQIHVPAKVFRYERKCCIFLE 68

Query: 112 ALQEFCQMQPISTQCIDAFI 132
           ALQEFCQMQPISTQCIDAF+
Sbjct: 69  ALQEFCQMQPISTQCIDAFM 88

[Close]
BLAST of MELO3C013501T1 vs. NCBI nr
Match: gi|659072230|ref|XP_008464173.1| (PREDICTED: uncharacterized protein LOC103502117 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 8.4e-29
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 1 

Query: 1   MDGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSVYQAD 60
           MDGDNVKVSVD+VTDGNCFVPV  RE RTML QEVGSQLLWPRHLVIPLD+KMKSVYQAD
Sbjct: 910 MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSVYQAD 969

Query: 61  LRLPSLTLNTKRTPVTL 78
            +L SLTLNTKR PVTL
Sbjct: 970 PQLSSLTLNTKRAPVTL 986

[Close]
BLAST of MELO3C013501T1 vs. NCBI nr
Match: gi|778714054|ref|XP_011657178.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 57/132 (43.18%), Postives = 89/132 (67.42%), Query Frame = 1 

Query: 2   DGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSV-YQAD 61
           DG+N+KVSVD+V DG   +P   +EG T L  E+GS L+WPRHLV+  ++K ++V +  D
Sbjct: 22  DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKKETVGFNTD 81

Query: 62  LRLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLEALQEFCQMQ 121
               S+     R  V LR L+  ++++GS IQ++ P ++F  +RKCCI +E+L++F  MQ
Sbjct: 82  PSTFSMAAYL-RALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFSSMQ 141

Query: 122 PISTQCIDAFIL 133
           PI T C+DA+++
Sbjct: 142 PICTSCLDAYMM 152

[Close]
BLAST of MELO3C013501T1 vs. NCBI nr
Match: gi|778714056|ref|XP_011657179.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 56/131 (42.75%), Postives = 86/131 (65.65%), Query Frame = 1 

Query: 2   DGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSVYQADL 61
           DG+N+KVSVD+V DG   +P   +EG T L  E+GS L+WPRHLV+  ++K    +  D 
Sbjct: 22  DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKETVGFNTDP 81

Query: 62  RLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLEALQEFCQMQP 121
              S+     R  V LR L+  ++++GS IQ++ P ++F  +RKCCI +E+L++F  MQP
Sbjct: 82  STFSMAAYL-RALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFSSMQP 141

Query: 122 ISTQCIDAFIL 133
           I T C+DA+++
Sbjct: 142 ICTSCLDAYMM 151

The following BLAST results are available for this feature:
BLAST of MELO3C013501T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMP7_CUCSA9.1e-1461.76Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065650 PE=4 SV=1[more]
A0A0A0KCE4_CUCSA5.7e-0852.73Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211850 PE=4 SV=1[more]
BLAST of MELO3C013501T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659134106|ref|XP_008467031.1|9.9e-6290.08PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo][more]
gi|659105267|ref|XP_008453054.1|3.9e-3492.50PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo][more]
gi|659072230|ref|XP_008464173.1|8.4e-2987.01PREDICTED: uncharacterized protein LOC103502117 [Cucumis melo][more]
gi|778714054|ref|XP_011657178.1|3.1e-2343.18PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus][more]
gi|778714056|ref|XP_011657179.1|4.0e-2342.75PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C013501MELO3C013501gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C013501T1MELO3C013501T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C013501T1.cds1MELO3C013501T1.cds1CDS
MELO3C013501T1.cds2MELO3C013501T1.cds2CDS