MELO3C013501 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013501
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09
Location	chr11 : 15237028 .. 15237496 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTGACAACGTGAAGGTATCAGTGGACATAGTTACCGATGGTAATTGCTTCGTTCCTGTTCAACCAAGGGAAGGTAGGACTATGCTTCCCCAAGAAGTTGGTTCACAGTTGTTATGGCCTCGTCATTTAGTCATTCCCCTAGACGAAAAGGTAATGTGTTTTTCATAATGGATTTGGTTTAAATATATTTCATATGGATGAGATTTTATGTTTGTGGCAGATGAAAAGCGTGTACCAAGCTGATCTGCGATTACCGTCGTTGACACTGAATACAAAGAGAACACCAGTTACACTACGATTATTGCTATGGGAACTTGATTATATTGGGTCAAAAATTCAAATTCACGAACCTGCTAAAGTTTTTTGGTATGAACGAAAATGTTGCATATTCCTCGAGGCACTCCAAGAATTTTGTCAAATGCAGCCTATATCAACCCAATGCATTGATGCATTCATTTTGTAA

mRNA sequence

ATGGATGGTGACAACGTGAAGGTATCAGTGGACATAGTTACCGATGGTAATTGCTTCGTTCCTGTTCAACCAAGGGAAGGTAGGACTATGCTTCCCCAAGAAGTTGGTTCACAGTTGTTATGGCCTCGTCATTTAGTCATTCCCCTAGACGAAAAGATGAAAAGCGTGTACCAAGCTGATCTGCGATTACCGTCGTTGACACTGAATACAAAGAGAACACCAGTTACACTACGATTATTGCTATGGGAACTTGATTATATTGGGTCAAAAATTCAAATTCACGAACCTGCTAAAGTTTTTTGGTATGAACGAAAATGTTGCATATTCCTCGAGGCACTCCAAGAATTTTGTCAAATGCAGCCTATATCAACCCAATGCATTGATGCATTCATTTTGTAA

Coding sequence (CDS)

ATGGATGGTGACAACGTGAAGGTATCAGTGGACATAGTTACCGATGGTAATTGCTTCGTTCCTGTTCAACCAAGGGAAGGTAGGACTATGCTTCCCCAAGAAGTTGGTTCACAGTTGTTATGGCCTCGTCATTTAGTCATTCCCCTAGACGAAAAGATGAAAAGCGTGTACCAAGCTGATCTGCGATTACCGTCGTTGACACTGAATACAAAGAGAACACCAGTTACACTACGATTATTGCTATGGGAACTTGATTATATTGGGTCAAAAATTCAAATTCACGAACCTGCTAAAGTTTTTTGGTATGAACGAAAATGTTGCATATTCCTCGAGGCACTCCAAGAATTTTGTCAAATGCAGCCTATATCAACCCAATGCATTGATGCATTCATTTTGTAA

Protein sequence

MDGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSVYQADLRLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLEALQEFCQMQPISTQCIDAFIL*

Homology

[Close]

BLAST of MELO3C013501 vs. TrEMBL
Match: A0A0A0KMP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065650 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.1e-14
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 1


Query: 1  MDGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMK---SVY 60
          MDGDNV + VD+V DG+C VP+  R+G TML QE+ SQLLWPRHLVIP DEK +      
Sbjct: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60

Query: 61 QADLRLPS 66
          QAD R PS
Sbjct: 61 QADERAPS 68

[Close]

BLAST of MELO3C013501 vs. TrEMBL
Match: A0A0A0KCE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211850 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-08
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1


Query: 2   DGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSV 57
           DG+N+KVSVD+V DG   +P   +EG T L  E+GS L+WPRHLV+  ++K  SV
Sbjct: 129 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKSYSV 183

[Close]

BLAST of MELO3C013501 vs. NCBI nr
Match: gi|659134106|ref|XP_008467031.1| (PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 9.9e-62
Identity = 118/131 (90.08%), Postives = 123/131 (93.89%), Query Frame = 1


Query: 1   MDGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSVYQAD 60
           MDGDNVKVSVD+VTDGNCFVPV  REGRTML +EVGSQLLWPRHLVIPLDEKMKSVYQAD
Sbjct: 177 MDGDNVKVSVDMVTDGNCFVPVPTREGRTMLSEEVGSQLLWPRHLVIPLDEKMKSVYQAD 236

Query: 61  LRLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLEALQEFCQMQ 120
            RLPSLTLNTKR PVTLRLLLWEL+YIGSKI+IH PAKVF YERKCCIFLEALQEFCQMQ
Sbjct: 237 SRLPSLTLNTKRAPVTLRLLLWELNYIGSKIRIHVPAKVFGYERKCCIFLEALQEFCQMQ 296

Query: 121 PISTQCIDAFI 132
           PISTQCID F+
Sbjct: 297 PISTQCIDVFM 307

[Close]

BLAST of MELO3C013501 vs. NCBI nr
Match: gi|659105267|ref|XP_008453054.1| (PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 3.9e-34
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 1


Query: 52  KMKSVYQADLRLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLE 111
           +MKSVYQAD RLPSLTLNTKR PVTLRLLLWELDYIGSKIQIH PAKVF YERKCCIFLE
Sbjct: 9   QMKSVYQADPRLPSLTLNTKRAPVTLRLLLWELDYIGSKIQIHVPAKVFRYERKCCIFLE 68

Query: 112 ALQEFCQMQPISTQCIDAFI 132
           ALQEFCQMQPISTQCIDAF+
Sbjct: 69  ALQEFCQMQPISTQCIDAFM 88

[Close]

BLAST of MELO3C013501 vs. NCBI nr
Match: gi|659072230|ref|XP_008464173.1| (PREDICTED: uncharacterized protein LOC103502117 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 8.4e-29
Identity = 67/77 (87.01%), Postives = 70/77 (90.91%), Query Frame = 1


Query: 1   MDGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSVYQAD 60
           MDGDNVKVSVD+VTDGNCFVPV  RE RTML QEVGSQLLWPRHLVIPLD+KMKSVYQAD
Sbjct: 910 MDGDNVKVSVDMVTDGNCFVPVPTRECRTMLSQEVGSQLLWPRHLVIPLDKKMKSVYQAD 969

Query: 61  LRLPSLTLNTKRTPVTL 78
            +L SLTLNTKR PVTL
Sbjct: 970 PQLSSLTLNTKRAPVTL 986

[Close]

BLAST of MELO3C013501 vs. NCBI nr
Match: gi|778714054|ref|XP_011657178.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 57/132 (43.18%), Postives = 89/132 (67.42%), Query Frame = 1


Query: 2   DGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSV-YQAD 61
           DG+N+KVSVD+V DG   +P   +EG T L  E+GS L+WPRHLV+  ++K ++V +  D
Sbjct: 22  DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKKETVGFNTD 81

Query: 62  LRLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLEALQEFCQMQ 121
               S+     R  V LR L+  ++++GS IQ++ P ++F  +RKCCI +E+L++F  MQ
Sbjct: 82  PSTFSMAAYL-RALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFSSMQ 141

Query: 122 PISTQCIDAFIL 133
           PI T C+DA+++
Sbjct: 142 PICTSCLDAYMM 152

[Close]

BLAST of MELO3C013501 vs. NCBI nr
Match: gi|778714056|ref|XP_011657179.1| (PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-23
Identity = 56/131 (42.75%), Postives = 86/131 (65.65%), Query Frame = 1


Query: 2   DGDNVKVSVDIVTDGNCFVPVQPREGRTMLPQEVGSQLLWPRHLVIPLDEKMKSVYQADL 61
           DG+N+KVSVD+V DG   +P   +EG T L  E+GS L+WPRHLV+  ++K    +  D 
Sbjct: 22  DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKETVGFNTDP 81

Query: 62  RLPSLTLNTKRTPVTLRLLLWELDYIGSKIQIHEPAKVFWYERKCCIFLEALQEFCQMQP 121
              S+     R  V LR L+  ++++GS IQ++ P ++F  +RKCCI +E+L++F  MQP
Sbjct: 82  STFSMAAYL-RALVALRCLVRLVEHMGSSIQLNTPLELFGVKRKCCIMVESLRDFSSMQP 141

Query: 122 ISTQCIDAFIL 133
           I T C+DA+++
Sbjct: 142 ICTSCLDAYMM 151

The following BLAST results are available for this feature:

BLAST of MELO3C013501 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMP7_CUCSA	9.1e-14	61.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G065650 PE=4 SV=1	[more]
A0A0A0KCE4_CUCSA	5.7e-08	52.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G211850 PE=4 SV=1	[more]

BLAST of MELO3C013501 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659134106\|ref\|XP_008467031.1\|	9.9e-62	90.08	PREDICTED: uncharacterized protein LOC103504458, partial [Cucumis melo]	[more]
gi\|659105267\|ref\|XP_008453054.1\|	3.9e-34	92.50	PREDICTED: uncharacterized protein LOC103493876 [Cucumis melo]	[more]
gi\|659072230\|ref\|XP_008464173.1\|	8.4e-29	87.01	PREDICTED: uncharacterized protein LOC103502117 [Cucumis melo]	[more]
gi\|778714054\|ref\|XP_011657178.1\|	3.1e-23	43.18	PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus]	[more]
gi\|778714056\|ref\|XP_011657179.1\|	4.0e-23	42.75	PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013501T1	MELO3C013501T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013501	Cucurbita pepo (Zucchini)	cpemeB257
MELO3C013501	Cucurbita pepo (Zucchini)	cpemeB659
MELO3C013501	Cucumber (Gy14) v2	cgybmeB367
MELO3C013501	Silver-seed gourd	carmeB0350
MELO3C013501	Silver-seed gourd	carmeB0843
MELO3C013501	Cucumber (Chinese Long) v3	cucmeB431
MELO3C013501	Watermelon (97103) v2	mewmbB114
MELO3C013501	Wax gourd	mewgoB126
MELO3C013501	Cucumber (Gy14) v1	cgymeB179
MELO3C013501	Cucurbita maxima (Rimu)	cmameB494
MELO3C013501	Cucurbita maxima (Rimu)	cmameB553
MELO3C013501	Cucurbita moschata (Rifu)	cmomeB482
MELO3C013501	Cucurbita moschata (Rifu)	cmomeB542
MELO3C013501	Wild cucumber (PI 183967)	cpimeB419
MELO3C013501	Cucumber (Chinese Long) v2	cumeB425
MELO3C013501	Watermelon (Charleston Gray)	mewcgB112