MELO3C013491T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013491T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA binding protein, putative
Location	chr11 : 15031225 .. 15033288 (+)
Sequence length	761

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGAACATCCCAGCTCCATTCCGATTGCCTCTGCCCACCCCACCCCTCCCGCCTTCCACTCCTGCCCCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCCTGCCACTTCAAGGTCTCAAGTAACAAATATGCCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTAACTTGCCTAGACCTGGTGAAACTTTTTCCTTTTTCTAGCTTGAATGAAATTCTGTCGTCAACTGGAGCCCAAAAGTCTGCTCTGACTAATACTAAAGGTGTATCCAAATAATGGTATGGCCATTTTTGTTTGGAACCTTCCCATATGAATCGGCTCGATTAATTTTGAGCTATGGTGTTGGGGATAACTCTTTAGTCTTTAAAGTTAAGACCTTGGCAACGGTTTTGCAAGCCTTTAGTAGTAGAAAGGACCTTTAGCAACAAATTTGTATAAACTTGTAGTGAGGTTATTTGGCCGACAGTCAACCCCTTTGAAGATCCTTTTTGTTTTGTTTTTGTGGAATCAGACAAAGCTAGGTCTCATTACACAAGAATTAAGGATTCCATTCTAAAAAAATCTTGGGACACCTCCACTCTGTCCCCTTTGAAGATGTATCAGAAGAAATAAAGCTACATCTCGGTGTAATTATTCACATTTTTTTATGTCCTACATTTTCTCTACACTCTTATCCAATTGGAGAACATGAGAAGTTTATTGTGAATCATTTGGATCGGACTCTCCCATTTTTATAAACTTCATGCATAAATGAAACTTGTTCTTAAAAAATTATTTTTCATAAATTTCCCCGCATATCCATAGGACCCTGTAAATCTGGTAATTTTTGTTGTTGTGGTTCAAAATTATACGAGCATGTCAGCAAAATTTATTTCTTTTATTCCATATGGACAATGATGTCAATCTTGTTGATGTTTTTATCATCTACAATTTTTAGGTGCATCATGTCCGTTTTTTTTACGTCAATAAATGCTTTCATGTCAATAAATGTTCTTTCCTTTGTTTTTGTGTTTTTAATTCTCCTGTATGGTTTTATTTTATATTCTATTCATTTCTTGTTCTAGGCTGTTTCTAGCTGAGATGAGGTATAATAATGTACTCCCATTTTTTCTTGGAACTTTCTGATTAATTGGATTTAAGTTTGCATCAGGATGTTGAAGGAAAATATAATTCAAGCGGAGTTTCAAAAACTGCAAAATCAGGATACAAGCGTCCTAGGTGTGAAACCATTGTAGGCCCTGGGATAGATAAAGATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCAAAAGAGATTCCTATGATAAAAAAGAAGAACCCCGTGATTCAGGTTGCGTTTATCATAAAACAGAACTAATTGGCATATGATCTTATTTATATGACTCCTCCAGATTCCCTTGTTTAATCGTTGCAGATTAGAATTGCCCCTAAAGTGATTCATGATGGAAAAGTTGATAAAACTAACAATGATGGTGAAGGGGCAGAAAAGGAAGCAGATGATCTTAAGCCATATGCAACACTCGAAGATTTAGAGAGAGGCAAATTGCCTCCAGAAGAAATTCTTTCGCTTCCAATGTTCAAGGTACTATACCATGTGATATTTTAATGTTTAAGTAGAGAAAATGCATGTTATTTGTCTTGGTTCATTAAAGCTCAATTTTTTAAAATAAAAAGGGAGCTTTGTTTTTAAGATGGTTAAACATGTTTTTTTAAACAGAAGCTTACCTCCTGTTTTGGGACGTGTGGCCTTGTTTGCTAGTGAAATATTTGTACTATAGTTTTATGACTTATCTTTTATCCCTTGTTAGGAAAGATATGAACCTCTCGATGCTGCTATTTTCAGTTTCTCTTTTGTTGGCCGCAATTGGGACATTGTTAGGAACAAATGTAGTACGAGATGCCATTTCCCCACATTGGTTAGAATGGGATGACTAATGCGGTACTTAAGTGGCTTGACTCTCCCAAATCCCACCCTAATATCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACCTAATGATGGTACTAGAGCC

mRNA sequence

GATGAACATCCCAGCTCCATTCCGATTGCCTCTGCCCACCCCACCCCTCCCGCCTTCCACTCCTGCCCCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCCTGCCACTTCAAGGTCTCAAGTAACAAATATGCCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTTGAAGGAAAATATAATTCAAGCGGAGTTTCAAAAACTGCAAAATCAGGATACAAGCGTCCTAGGTGTGAAACCATTGTAGGCCCTGGGATAGATAAAGATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCAAAAGAGATTCCTATGATAAAAAAGAAGAACCCCGTGATTCAGATTAGAATTGCCCCTAAAGTGATTCATGATGGAAAAGTTGATAAAACTAACAATGATGGTGAAGGGGCAGAAAAGGAAGCAGATGATCTTAAGCCATATGCAACACTCGAAGATTTAGAGAGAGGCAAATTGCCTCCAGAAGAAATTCTTTCGCTTCCAATGTTCAAGATATGAACCTCTCGATGCTGCTATTTTCAGTTTCTCTTTTGTTGGCCGCAATTGGGACATTGTTAGGAACAAATGTAGTACGAGATGCCATTTCCCCACATTGGTTAGAATGGGATGACTAATGCGGTACTTAAGTGGCTTGACTCTCCCAAATCCCACCCTAATATCTAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACCTAATGATGGTACTAGAGCC

Coding sequence (CDS)

ATGAACATCCCAGCTCCATTCCGATTGCCTCTGCCCACCCCACCCCTCCCGCCTTCCACTCCTGCCCCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCCTGCCACTTCAAGGTCTCAAGTAACAAATATGCCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTTGAAGGAAAATATAATTCAAGCGGAGTTTCAAAAACTGCAAAATCAGGATACAAGCGTCCTAGGTGTGAAACCATTGTAGGCCCTGGGATAGATAAAGATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCAAAAGAGATTCCTATGATAAAAAAGAAGAACCCCGTGATTCAGATTAGAATTGCCCCTAAAGTGATTCATGATGGAAAAGTTGATAAAACTAACAATGATGGTGAAGGGGCAGAAAAGGAAGCAGATGATCTTAAGCCATATGCAACACTCGAAGATTTAGAGAGAGGCAAATTGCCTCCAGAAGAAATTCTTTCGCTTCCAATGTTCAAGATATGA

Protein sequence

MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFKI*

Homology

[Close]

BLAST of MELO3C013491T2 vs. Swiss-Prot
Match: U1165_ARATH (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana GN=SNRNP65 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-34
Identity = 86/180 (47.78%), Postives = 107/180 (59.44%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MN+P PFRL LPTPPLP + P                  ++ + +  S ESEMES E+  
Sbjct: 192 MNLPPPFRLALPTPPLPKAGP-----------------QQTDLEHQSSSESEMESDED-- 251

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
                      T+KSG KR R   +VG G+DKDV HE VGVKPS+L PKEIP I+K   V
Sbjct: 252 ---------IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHV 311

Query: 121 IQIRIAPKVIHDG-KVDKTNNDGEGAEKEAD-DLKPYATLEDLERGKLPPEEILSLPMFK 179
           +QI+I  KV  D  K +  N D     KE D +LKP+A+LE+LE+G+LPP++ILSLPMFK
Sbjct: 312 MQIKITSKVTQDEYKEESENEDPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFK 343

[Close]

BLAST of MELO3C013491T2 vs. TrEMBL
Match: A0A0A0KCT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.3e-92
Identity = 170/178 (95.51%), Postives = 171/178 (96.07%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPS PAPPSPSLTLPPLPPP T+RSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPVTTRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYN SGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           IQIRIAPKVIHDGKV   NNDGE AEKEADDLKPYATLEDLERGKLPPEEILSLPMFK
Sbjct: 204 IQIRIAPKVIHDGKVGNINNDGEEAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 261

[Close]

BLAST of MELO3C013491T2 vs. TrEMBL
Match: D7SNK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.6e-56
Identity = 115/179 (64.25%), Postives = 136/179 (75.98%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFR+ LPTPPLPP  PAPP      PP PPP  +R  + ++ S ESEMESS+E+V
Sbjct: 193 MNIPAPFRMALPTPPLPPPVPAPP------PPPPPPEAARPNLEDLSSGESEMESSDEEV 252

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           +G   S+G  +  K G KR + E IVGPG+DKDVAHEAVGVKP+TLVPKEIPMIKKKNPV
Sbjct: 253 DGNAYSTGPPRETKPGRKRVKREAIVGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPV 312

Query: 121 IQIRIAPKVIHDGKVD-KTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           +QI+I PKVI + K +     + E +EKE  DLKPYATLE+L+ GKLPPEEILSLPMFK
Sbjct: 313 LQIKIVPKVITEHKDECSIMKESEDSEKEDFDLKPYATLEELKSGKLPPEEILSLPMFK 365

[Close]

BLAST of MELO3C013491T2 vs. TrEMBL
Match: A5C0Z0_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_040912 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55
Identity = 115/179 (64.25%), Postives = 136/179 (75.98%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFR+ LPTPPLPP  PAPP      PP PPP  +R  + ++ S ESEMESS+E+V
Sbjct: 1   MNIPAPFRMALPTPPLPPPVPAPP------PPPPPPEAARPNLEDLSSGESEMESSDEEV 60

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           +G   S+G  +  K G KR + E IVGPG+DKDVAHEAVGVKP+TLVPKEIPMIKKKNPV
Sbjct: 61  DGXAYSTGPPRETKPGRKRVKREAIVGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPV 120

Query: 121 IQIRIAPKVIHDGKVD-KTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           +QI+I PKVI + K +     + E +EKE  DLKPYATLE+L+ GKLPPEEILSLPMFK
Sbjct: 121 LQIKIXPKVITEHKDECSIMKESEDSEKEDFDLKPYATLEELKSGKLPPEEILSLPMFK 173

[Close]

BLAST of MELO3C013491T2 vs. TrEMBL
Match: F6HYT0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00500 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 113/179 (63.13%), Postives = 135/179 (75.42%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFR+ LPTPP+PP  PAPP+P       PPP  +R  + ++ S ESEMESS+E+V
Sbjct: 191 MNIPAPFRMALPTPPIPPPVPAPPTPP------PPPEAARPNLEDLSSGESEMESSDEEV 250

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           +GK  S G  +  K G KR + E I GPG+DKDVAHEAVGVKP+TLVPKEIPMIKKKNPV
Sbjct: 251 DGKAYSPGPPRETKPGRKRVKREAIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPV 310

Query: 121 IQIRIAPKVIHDGKVD-KTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           +QI+IAPKVI + K +     + E +EKE  DLK YATLE+L+ GKLPPEEILSLPMFK
Sbjct: 311 LQIKIAPKVITEHKDECSIMKESEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPMFK 363

[Close]

BLAST of MELO3C013491T2 vs. TrEMBL
Match: A5BZG4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042644 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.9e-54
Identity = 113/179 (63.13%), Postives = 135/179 (75.42%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFR+ LPTPP+PP  PAPP+P       PPP  +R  + ++ S ESEMESS+E+V
Sbjct: 1   MNIPAPFRMALPTPPIPPPVPAPPTPP------PPPEAARPNLEDLSSGESEMESSDEEV 60

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           +GK  S G  +  K G KR + E I GPG+DKDVAHEAVGVKP+TLVPKEIPMIKKKNPV
Sbjct: 61  DGKAYSPGPPRETKPGRKRVKREAIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPV 120

Query: 121 IQIRIAPKVIHDGKVD-KTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           +QI+IAPKVI + K +     + E +EKE  DLK YATLE+L+ GKLPPEEILSLPMFK
Sbjct: 121 LQIKIAPKVITEHKDECSIMKESEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPMFK 173

[Close]

BLAST of MELO3C013491T2 vs. TAIR10
Match: AT1G09230.1 (AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-35
Identity = 86/180 (47.78%), Postives = 107/180 (59.44%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MN+P PFRL LPTPPLP + P                  ++ + +  S ESEMES E+  
Sbjct: 192 MNLPPPFRLALPTPPLPKAGP-----------------QQTDLEHQSSSESEMESDED-- 251

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
                      T+KSG KR R   +VG G+DKDV HE VGVKPS+L PKEIP I+K   V
Sbjct: 252 ---------IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHV 311

Query: 121 IQIRIAPKVIHDG-KVDKTNNDGEGAEKEAD-DLKPYATLEDLERGKLPPEEILSLPMFK 179
           +QI+I  KV  D  K +  N D     KE D +LKP+A+LE+LE+G+LPP++ILSLPMFK
Sbjct: 312 MQIKITSKVTQDEYKEESENEDPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFK 343

[Close]

BLAST of MELO3C013491T2 vs. NCBI nr
Match: gi|659094675|ref|XP_008448186.1| (PREDICTED: RNA-binding protein 40 isoform X8 [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 1.5e-97
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK
Sbjct: 204 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 261

[Close]

BLAST of MELO3C013491T2 vs. NCBI nr
Match: gi|659094651|ref|XP_008448172.1| (PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 1.5e-97
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK
Sbjct: 204 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 261

[Close]

BLAST of MELO3C013491T2 vs. NCBI nr
Match: gi|659094673|ref|XP_008448185.1| (PREDICTED: RNA-binding protein 40 isoform X7 [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 1.5e-97
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK
Sbjct: 204 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 261

[Close]

BLAST of MELO3C013491T2 vs. NCBI nr
Match: gi|659094671|ref|XP_008448183.1| (PREDICTED: RNA-binding protein 40 isoform X6 [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 1.5e-97
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 4   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 63

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 64  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 123

Query: 121 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK
Sbjct: 124 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 181

[Close]

BLAST of MELO3C013491T2 vs. NCBI nr
Match: gi|659094661|ref|XP_008448178.1| (PREDICTED: RNA-binding protein 40 isoform X2 [Cucumis melo])

HSP 1 Score: 364.0 bits (933), Expect = 1.5e-97
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1


Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 179
           IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK
Sbjct: 204 IQIRIAPKVIHDGKVDKTNNDGEGAEKEADDLKPYATLEDLERGKLPPEEILSLPMFK 261

The following BLAST results are available for this feature:

BLAST of MELO3C013491T2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U1165_ARATH	4.0e-34	47.78	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana G...	[more]

BLAST of MELO3C013491T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCT1_CUCSA	1.3e-92	95.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1	[more]
D7SNK2_VITVI	7.6e-56	64.25	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01100 PE=4 SV=...	[more]
A5C0Z0_VITVI	1.3e-55	64.25	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_040912 P...	[more]
F6HYT0_VITVI	1.9e-54	63.13	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00500 PE=4 SV=...	[more]
A5BZG4_VITVI	1.9e-54	63.13	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042644 PE=4 SV=1	[more]

BLAST of MELO3C013491T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09230.1	2.3e-35	47.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of MELO3C013491T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094675\|ref\|XP_008448186.1\|	1.5e-97	100.00	PREDICTED: RNA-binding protein 40 isoform X8 [Cucumis melo]	[more]
gi\|659094651\|ref\|XP_008448172.1\|	1.5e-97	100.00	PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo]	[more]
gi\|659094673\|ref\|XP_008448185.1\|	1.5e-97	100.00	PREDICTED: RNA-binding protein 40 isoform X7 [Cucumis melo]	[more]
gi\|659094671\|ref\|XP_008448183.1\|	1.5e-97	100.00	PREDICTED: RNA-binding protein 40 isoform X6 [Cucumis melo]	[more]
gi\|659094661\|ref\|XP_008448178.1\|	1.5e-97	100.00	PREDICTED: RNA-binding protein 40 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013491	MELO3C013491	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C013491T2	MELO3C013491T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013491T2.cds1	MELO3C013491T2.cds1	CDS
MELO3C013491T2.cds2	MELO3C013491T2.cds2	CDS
MELO3C013491T2.cds3	MELO3C013491T2.cds3	CDS
MELO3C013491T2.cds4	MELO3C013491T2.cds4	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR16105	UNCHARACTERIZED	coord: 1..178 score: 8.0
None	No IPR available	PANTHER	PTHR16105:SF0	RNA-BINDING PROTEIN 40	coord: 1..178 score: 8.0