MELO3C013491 (gene) Melon (DHL92) v3.5.1

NameMELO3C013491
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA binding protein, putative
Locationchr11 : 15031225 .. 15033288 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAACATCCCAGCTCCATTCCGATTGCCTCTGCCCACCCCACCCCTCCCGCCTTCCACTCCTGCCCCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCCTGCCACTTCAAGGTCTCAAGTAACAAATATGCCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGTAACTTGCCTAGACCTGGTGAAACTTTTTCCTTTTTCTAGCTTGAATGAAATTCTGTCGTCAACTGGAGCCCAAAAGTCTGCTCTGACTAATACTAAAGGTGTATCCAAATAATGGTATGGCCATTTTTGTTTGGAACCTTCCCATATGAATCGGCTCGATTAATTTTGAGCTATGGTGTTGGGGATAACTCTTTAGTCTTTAAAGTTAAGACCTTGGCAACGGTTTTGCAAGCCTTTAGTAGTAGAAAGGACCTTTAGCAACAAATTTGTATAAACTTGTAGTGAGGTTATTTGGCCGACAGTCAACCCCTTTGAAGATCCTTTTTGTTTTGTTTTTGTGGAATCAGACAAAGCTAGGTCTCATTACACAAGAATTAAGGATTCCATTCTAAAAAAATCTTGGGACACCTCCACTCTGTCCCCTTTGAAGATGTATCAGAAGAAATAAAGCTACATCTCGGTGTAATTATTCACATTTTTTTATGTCCTACATTTTCTCTACACTCTTATCCAATTGGAGAACATGAGAAGTTTATTGTGAATCATTTGGATCGGACTCTCCCATTTTTATAAACTTCATGCATAAATGAAACTTGTTCTTAAAAAATTATTTTTCATAAATTTCCCCGCATATCCATAGGACCCTGTAAATCTGGTAATTTTTGTTGTTGTGGTTCAAAATTATACGAGCATGTCAGCAAAATTTATTTCTTTTATTCCATATGGACAATGATGTCAATCTTGTTGATGTTTTTATCATCTACAATTTTTAGGTGCATCATGTCCGTTTTTTTTACGTCAATAAATGCTTTCATGTCAATAAATGTTCTTTCCTTTGTTTTTGTGTTTTTAATTCTCCTGTATGGTTTTATTTTATATTCTATTCATTTCTTGTTCTAGGCTGTTTCTAGCTGAGATGAGGTATAATAATGTACTCCCATTTTTTCTTGGAACTTTCTGATTAATTGGATTTAAGTTTGCATCAGGATGTTGAAGGAAAATATAATTCAAGCGGAGTTTCAAAAACTGCAAAATCAGGATACAAGCGTCCTAGGTGTGAAACCATTGTAGGCCCTGGGATAGATAAAGATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCAAAAGAGATTCCTATGATAAAAAAGAAGAACCCCGTGATTCAGGTTGCGTTTATCATAAAACAGAACTAATTGGCATATGATCTTATTTATATGACTCCTCCAGATTCCCTTGTTTAATCGTTGCAGATTAGAATTGCCCCTAAAGTG

mRNA sequence

GATGAACATCCCAGCTCCATTCCGATTGCCTCTGCCCACCCCACCCCTCCCGCCTTCCACTCCTGCCCCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCCTGCCACTTCAAGGTCTCAAGTAACAAATATGCCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTTGAAGGAAAATATAATTCAAGCGGAGTTTCAAAAACTGCAAAATCAGGATACAAGCGTCCTAGGTGTGAAACCATTGTAGGCCCTGGGATAGATAAAGATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCAAAAGAGATTCCTATGATAAAAAAGAAGAACCCCGTGATTCAGGTTGCGTTTATCATAAAACAGAACTAATTGGCATATGATCTTATTTATATGACTCCTCCAGATTCCCTTGTTTAATCGTTGCAGATTAGAATTGCCCCTAAAGTG

Coding sequence (CDS)

ATGAACATCCCAGCTCCATTCCGATTGCCTCTGCCCACCCCACCCCTCCCGCCTTCCACTCCTGCCCCACCATCACCATCATTAACGCTGCCACCTCTTCCTCCTCCTGCCACTTCAAGGTCTCAAGTAACAAATATGCCCAGTGATGAGTCAGAAATGGAGTCCTCAGAAGAGGATGTTGAAGGAAAATATAATTCAAGCGGAGTTTCAAAAACTGCAAAATCAGGATACAAGCGTCCTAGGTGTGAAACCATTGTAGGCCCTGGGATAGATAAAGATGTGGCTCATGAGGCTGTTGGGGTGAAACCTTCCACATTGGTTCCAAAAGAGATTCCTATGATAAAAAAGAAGAACCCCGTGATTCAGGTTGCGTTTATCATAAAACAGAACTAA

Protein sequence

MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDVEGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPVIQVAFIIKQN*
BLAST of MELO3C013491 vs. Swiss-Prot
Match: U1165_ARATH (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana GN=SNRNP65 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-18
Identity = 56/128 (43.75%), Postives = 68/128 (53.12%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MN+P PFRL LPTPPLP + P                  ++ + +  S ESEMES E+  
Sbjct: 192 MNLPPPFRLALPTPPLPKAGP-----------------QQTDLEHQSSSESEMESDED-- 251

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
                      T+KSG KR R   +VG G+DKDV HE VGVKPS+L PKEIP I+K   V
Sbjct: 252 ---------IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHV 291

Query: 121 IQVAFIIK 129
           +Q+    K
Sbjct: 312 MQIKITSK 291

BLAST of MELO3C013491 vs. TrEMBL
Match: A0A0A0KCT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-62
Identity = 118/123 (95.93%), Postives = 120/123 (97.56%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPS PAPPSPSLTLPPLPPP T+RSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSIPAPPSPSLTLPPLPPPVTTRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYN SGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNPSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQV 124
           IQ+
Sbjct: 204 IQI 206

BLAST of MELO3C013491 vs. TrEMBL
Match: A0A059DGY1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02076 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 81/128 (63.28%), Postives = 96/128 (75.00%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFR+ LPTPPLPPS   PP P    PP PPP T++  V ++ S+ESE ESSEE+V
Sbjct: 210 MNIPAPFRMALPTPPLPPSAAVPPPPP---PPPPPPITAKPLVADLSSEESEFESSEEEV 269

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           + K  S G S+  KS  KR R E IVGP IDKDVAHE+VG+KP+TLVPKEIP+IKKKNPV
Sbjct: 270 DDKAQSLGFSRV-KSSKKRARREAIVGPAIDKDVAHESVGLKPATLVPKEIPLIKKKNPV 329

Query: 121 IQVAFIIK 129
           +Q+  I K
Sbjct: 330 LQIKIIPK 333

BLAST of MELO3C013491 vs. TrEMBL
Match: B9SHJ5_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_1122320 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-33
Identity = 74/123 (60.16%), Postives = 91/123 (73.98%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFR+ LPTPPLPPS P PP      PP PP    +  + ++ S E+EMESS+ED+
Sbjct: 182 MNIPAPFRMALPTPPLPPSAPPPP------PPPPPTVAGKPHLADLSSSEAEMESSDEDI 241

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           + K +   VS+  KS  KR R E IVGPG+DKDV HEAVG+KPS+LVPKEIP+IKKKNPV
Sbjct: 242 DNKTHP--VSREIKSRRKRVRQEAIVGPGVDKDVVHEAVGLKPSSLVPKEIPVIKKKNPV 296

Query: 121 IQV 124
           +Q+
Sbjct: 302 LQI 296

BLAST of MELO3C013491 vs. TrEMBL
Match: B9I5U9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05120g PE=4 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFR+ LPTPPLP   P+PP      PP PP  T  S +    S ESEMESS+E+V
Sbjct: 209 MNIPAPFRMALPTPPLPLPPPSPPP-----PPPPPCLTENSSLAEQSSSESEMESSDEEV 268

Query: 61  EGK--YNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKN 120
           + K  Y +SG  K  +   KR   + IVGP  DKDV HE+VG+KP++LVPKEIP+IKKKN
Sbjct: 269 DDKAPYGASGAVKQRRKRIKR---KAIVGPAADKDVVHESVGLKPASLVPKEIPIIKKKN 325

Query: 121 PVIQV 124
            V+Q+
Sbjct: 329 TVLQI 325

BLAST of MELO3C013491 vs. TAIR10
Match: AT1G09230.1 (AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-20
Identity = 56/128 (43.75%), Postives = 68/128 (53.12%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MN+P PFRL LPTPPLP + P                  ++ + +  S ESEMES E+  
Sbjct: 192 MNLPPPFRLALPTPPLPKAGP-----------------QQTDLEHQSSSESEMESDED-- 251

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
                      T+KSG KR R   +VG G+DKDV HE VGVKPS+L PKEIP I+K   V
Sbjct: 252 ---------IGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHV 291

Query: 121 IQVAFIIK 129
           +Q+    K
Sbjct: 312 MQIKITSK 291

BLAST of MELO3C013491 vs. NCBI nr
Match: gi|659094675|ref|XP_008448186.1| (PREDICTED: RNA-binding protein 40 isoform X8 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-64
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQV 124
           IQ+
Sbjct: 204 IQI 206

BLAST of MELO3C013491 vs. NCBI nr
Match: gi|659094673|ref|XP_008448185.1| (PREDICTED: RNA-binding protein 40 isoform X7 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-64
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQV 124
           IQ+
Sbjct: 204 IQI 206

BLAST of MELO3C013491 vs. NCBI nr
Match: gi|659094671|ref|XP_008448183.1| (PREDICTED: RNA-binding protein 40 isoform X6 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-64
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 4   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 63

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 64  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 123

Query: 121 IQV 124
           IQ+
Sbjct: 124 IQI 126

BLAST of MELO3C013491 vs. NCBI nr
Match: gi|659094651|ref|XP_008448172.1| (PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-64
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQV 124
           IQ+
Sbjct: 204 IQI 206

BLAST of MELO3C013491 vs. NCBI nr
Match: gi|659094669|ref|XP_008448182.1| (PREDICTED: RNA-binding protein 40 isoform X5 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-64
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1

Query: 1   MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 60
           MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV
Sbjct: 84  MNIPAPFRLPLPTPPLPPSTPAPPSPSLTLPPLPPPATSRSQVTNMPSDESEMESSEEDV 143

Query: 61  EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 120
           EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV
Sbjct: 144 EGKYNSSGVSKTAKSGYKRPRCETIVGPGIDKDVAHEAVGVKPSTLVPKEIPMIKKKNPV 203

Query: 121 IQV 124
           IQ+
Sbjct: 204 IQI 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
U1165_ARATH1.0e-1843.75U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana G... [more]
Match NameE-valueIdentityDescription
A0A0A0KCT1_CUCSA2.3e-6295.93Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118290 PE=4 SV=1[more]
A0A059DGY1_EUCGR2.9e-3663.28Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02076 PE=4 SV=1[more]
B9SHJ5_RICCO3.0e-3360.16RNA binding protein, putative OS=Ricinus communis GN=RCOM_1122320 PE=4 SV=1[more]
B9I5U9_POPTR1.1e-2755.20Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05120g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
AT1G09230.15.7e-2043.75 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
Match NameE-valueIdentityDescription
gi|659094675|ref|XP_008448186.1|2.7e-6499.19PREDICTED: RNA-binding protein 40 isoform X8 [Cucumis melo][more]
gi|659094673|ref|XP_008448185.1|2.7e-6499.19PREDICTED: RNA-binding protein 40 isoform X7 [Cucumis melo][more]
gi|659094671|ref|XP_008448183.1|2.7e-6499.19PREDICTED: RNA-binding protein 40 isoform X6 [Cucumis melo][more]
gi|659094651|ref|XP_008448172.1|2.7e-6499.19PREDICTED: RNA-binding protein 40 isoform X1 [Cucumis melo][more]
gi|659094669|ref|XP_008448182.1|2.7e-6499.19PREDICTED: RNA-binding protein 40 isoform X5 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013491T1MELO3C013491T1mRNA
MELO3C013491T2MELO3C013491T2mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR16105UNCHARACTERIZEDcoord: 1..178
score: 8.0
NoneNo IPR availablePANTHERPTHR16105:SF0RNA-BINDING PROTEIN 40coord: 1..178
score: 8.0

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C013491Csa6G118290Cucumber (Chinese Long) v2cumeB425
MELO3C013491CSPI06G09630Wild cucumber (PI 183967)cpimeB419
MELO3C013491CsaV3_6G010080Cucumber (Chinese Long) v3cucmeB431
The following gene(s) are paralogous to this gene:

None