MELO3C013460T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C013460T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTransposable element protein, putative
Locationchr11 : 14194096 .. 14194608 (-)
Sequence length513
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCTTCAATTTGCTGATAGATCTATTACTAAGCCTGAGGGCAAGATTGAACACGTTTTGGTCAAGGTGGACAAATTTTTATTTTCTGCAGACTTTCTCATTCTGGATTACAAAGCTGATCGGAAGGTTCCTATTATCTTAGGGCGATCATTCCTATCAACTGGTCATCCCTTTATTGATCACCAAGGGGAATTGACAATGCATCTCAATTATGAAAAAATCAAGTTAAATGTTGTCAATGCAATGAAGTTCCCTGTTAATGATGAGAGTTGCAGTGCAATAGAGTCCTTAGGTTGGGACTATTATGAGGAAGAAGCTTCTTTTGAATTGTTCATGGACCCTGAGAATGAAAATGAAGAAATAAACGTCGTATCTGACGCGAGGAAGTTTGAGTCTTTAGATCTGCAAACCAAAGGCAAGAAGAAAACTATGCCATCAGTGAGAACCACTAGAACTAGAACTCAAGTTGCTACCCAACCACTTGAAATATGCATATTCGGGGGAGAATAA

mRNA sequence

ATGAGGCTTCAATTTGCTGATAGATCTATTACTAAGCCTGAGGGCAAGATTGAACACGTTTTGGTCAAGGTGGACAAATTTTTATTTTCTGCAGACTTTCTCATTCTGGATTACAAAGCTGATCGGAAGGTTCCTATTATCTTAGGGCGATCATTCCTATCAACTGGTCATCCCTTTATTGATCACCAAGGGGAATTGACAATGCATCTCAATTATGAAAAAATCAAGTTAAATGTTGTCAATGCAATGAAGTTCCCTGTTAATGATGAGAGTTGCAGTGCAATAGAGTCCTTAGGTTGGGACTATTATGAGGAAGAAGCTTCTTTTGAATTGTTCATGGACCCTGAGAATGAAAATGAAGAAATAAACGTCGTATCTGACGCGAGGAAGTTTGAGTCTTTAGATCTGCAAACCAAAGGCAAGAAGAAAACTATGCCATCAGTGAGAACCACTAGAACTAGAACTCAAGTTGCTACCCAACCACTTGAAATATGCATATTCGGGGGAGAATAA

Coding sequence (CDS)

ATGAGGCTTCAATTTGCTGATAGATCTATTACTAAGCCTGAGGGCAAGATTGAACACGTTTTGGTCAAGGTGGACAAATTTTTATTTTCTGCAGACTTTCTCATTCTGGATTACAAAGCTGATCGGAAGGTTCCTATTATCTTAGGGCGATCATTCCTATCAACTGGTCATCCCTTTATTGATCACCAAGGGGAATTGACAATGCATCTCAATTATGAAAAAATCAAGTTAAATGTTGTCAATGCAATGAAGTTCCCTGTTAATGATGAGAGTTGCAGTGCAATAGAGTCCTTAGGTTGGGACTATTATGAGGAAGAAGCTTCTTTTGAATTGTTCATGGACCCTGAGAATGAAAATGAAGAAATAAACGTCGTATCTGACGCGAGGAAGTTTGAGTCTTTAGATCTGCAAACCAAAGGCAAGAAGAAAACTATGCCATCAGTGAGAACCACTAGAACTAGAACTCAAGTTGCTACCCAACCACTTGAAATATGCATATTCGGGGGAGAATAA

Protein sequence

MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFIDHQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENENEEINVVSDARKFESLDLQTKGKKKTMPSVRTTRTRTQVATQPLEICIFGGE*
Homology
[Close]
BLAST of MELO3C013460T1 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 61/118 (51.69%), Postives = 74/118 (62.71%), Query Frame = 1 

Query: 3   LQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFID- 62
           LQ ADRSI  P G IE VLVKVDKFLF  DF++LD + DR VP+ILGR FL+T    ID 
Sbjct: 399 LQLADRSIKHPRGIIEDVLVKVDKFLFPIDFIVLDMEEDRDVPLILGRPFLATSRTLIDF 458

Query: 63  HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENEN 120
           HQG+L + +  E++  NV  AMKFP N ++C AI  L  D    E   E F +   EN
Sbjct: 459 HQGKLILRVQDEQVTFNVFEAMKFPSNVDACFAINVL--DRVVAETFHETFPNSPLEN 514

[Close]
BLAST of MELO3C013460T1 vs. TrEMBL
Match: A0A151R6C5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040614 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 56/146 (38.36%), Postives = 86/146 (58.90%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQ ADRSI  P G +E+++VKVDKF+F  DF+++D + D +VP+ILGR F+ T    I
Sbjct: 317 MTLQLADRSIKLPHGIVEYMIVKVDKFMFPVDFVVMDMEEDLEVPLILGRPFMKTARVII 376

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENE- 120
           D   G+L + +  E++  NV  AMKFP  ++ C  I+ L   Y E +++F+     E   
Sbjct: 377 DMDDGKLKVRVQDEEVNFNVFEAMKFPKGNKDCFRIDVLDDVYLETQSNFKNSSPLEKAL 436

Query: 121 ---NEEINVVSDARKFESLDLQTKGK 142
              +EE++ V D    + +D   KG+
Sbjct: 437 SVCDEELDKVIDKEVQDVIDALNKGE 462

[Close]
BLAST of MELO3C013460T1 vs. TrEMBL
Match: U5CWW5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 66/164 (40.24%), Postives = 90/164 (54.88%), Query Frame = 1 

Query: 3   LQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFID- 62
           LQ ADRS+  PEGKIE VLV+VDKF+F ADF+ILDY+ DR+VPIILGR FL+TG   ID 
Sbjct: 143 LQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEEDREVPIILGRPFLATGRTLIDV 202

Query: 63  HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENENEE 122
            +GELTM    E+    V + ++ P     C AI  +  +  EE      F + +   ++
Sbjct: 203 EKGELTMRAQDEQATFKVFHPIRAPDAIGECLAIGDMDPNMVEESK----FKNSKKVRKK 262

Query: 123 INVVSDARKFE--------SLDLQTKGKKKTMPSVRTTRTRTQV 158
           I +   A+  E        S D +   KKK        + R+Q+
Sbjct: 263 IPLKEIAKDHEPQESKDKTSFDPKKPPKKKRKKKKLVEKFRSQM 302

[Close]
BLAST of MELO3C013460T1 vs. TrEMBL
Match: A0A151RCP0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_038280 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQ ADRSI  P G +E ++VKVDKF+F  DF+++D + D +VP+ILGR F+ T    I
Sbjct: 258 MTLQLADRSIKLPHGIVEDMIVKVDKFMFPVDFVVMDMEEDLEVPLILGRLFMKTARVII 317

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENE- 120
           D   G+L + +  E++  NV  AMKFP  ++ C  I+ L   Y E +++F+     E   
Sbjct: 318 DLDDGKLKVRVQDEEVNFNVFEAMKFPKGNKDCFRIDVLDDLYLETQSNFKNSSPLEKAL 377

Query: 121 ---NEEINVVSDARKFESLDLQTKGKKKT 145
              +EE++ V D    + +D   KG+  +
Sbjct: 378 SMFDEELDKVIDTEVQDVIDALNKGESSS 406

[Close]
BLAST of MELO3C013460T1 vs. TrEMBL
Match: A0A151QP19_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_047377 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.8e-18
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQ ADRSI  P G +E ++VKVDKF+F  DF+++D + D +VP+ILGR F+ T    I
Sbjct: 68  MTLQLADRSIKLPHGIVEDMIVKVDKFMFPVDFVVMDMEEDVEVPLILGRPFMKTARVII 127

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENE- 120
           D   G + + +  E++  NV  AMKFP  ++ C  I+ L   Y E +++F+     E   
Sbjct: 128 DMDDGNMKVRVQDEEVNFNVFEAMKFPKGNKDCFRIDVLDDVYLETQSNFKNSSPLEKAL 187

Query: 121 ---NEEINVVSDARKFESLDLQTKGKKKT 145
              +EE++ V D    + +D   KG+  +
Sbjct: 188 SMFDEELDKVIDKEVQDVVDALNKGESSS 216

[Close]
BLAST of MELO3C013460T1 vs. NCBI nr
Match: gi|659130345|ref|XP_008465121.1| (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           MRLQF DRSI K EGKIE +LVKVDKFLF ADF+ILDY+A+++VPII GR FLSTGH  I
Sbjct: 80  MRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFLSTGHALI 139

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLG 100
           D HQGELTM  N +++K NV+NAMKFP +D++ S IESLG
Sbjct: 140 DVHQGELTMRFN-DEVKFNVMNAMKFPTDDKNYSMIESLG 178

[Close]
BLAST of MELO3C013460T1 vs. NCBI nr
Match: gi|659093662|ref|XP_008447648.1| (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-27
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPF- 60
           MR Q ADRSIT P+GKIE VLVKVDKFLF ADF+ILDY+AD +V IIL R FLSTG    
Sbjct: 91  MRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFLSTGRALT 150

Query: 61  IDHQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESL 99
             HQGELT+  N ++IK NV+NAMKFP++DESC+ IESL
Sbjct: 151 YIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 189

[Close]
BLAST of MELO3C013460T1 vs. NCBI nr
Match: gi|659111569|ref|XP_008455795.1| (PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-24
Identity = 64/100 (64.00%), Postives = 76/100 (76.00%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQF DRSIT+PEGKI+ VL+KVDKFLF ADF+ILDY+ADR+VPIIL  SFL TGH  I
Sbjct: 100 MVLQFVDRSITRPEGKIDDVLIKVDKFLFLADFIILDYEADREVPIILELSFLRTGHALI 159

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLG 100
           D HQ ELTM LN +KI  N+VNAM  P+  ++   +  LG
Sbjct: 160 DVHQWELTMLLNDQKISFNIVNAMNSPLMLKTAMQLNLLG 199

[Close]
BLAST of MELO3C013460T1 vs. NCBI nr
Match: gi|985438636|ref|XP_015383625.1| (PREDICTED: uncharacterized protein LOC107176093 [Citrus sinensis])

HSP 1 Score: 109.0 bits (271), Expect = 8.3e-21
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQ ADRS   PEGKIE VLVKVDKF+F  DF++LD++AD++VPIILGR FL+TG   I
Sbjct: 59  MTLQLADRSHVYPEGKIEDVLVKVDKFIFPVDFIVLDFEADKEVPIILGRPFLATGKTLI 118

Query: 61  DHQ-GELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENEN 120
           + Q GELTM +N +++K NV++AMK     E C+ I  + +   E+  S           
Sbjct: 119 NVQKGELTMRVNNQQVKFNVLDAMKSSDEIEDCNFISVVDFVVAEKLHSC-------CSE 178

Query: 121 EEINVVS----DARKFESLDLQTKGKKK 144
           E IN V+    D    E+ ++   G+K+
Sbjct: 179 EAINAVTLEELDGEDHEAANITWSGEKQ 199

[Close]
BLAST of MELO3C013460T1 vs. NCBI nr
Match: gi|823144988|ref|XP_012472341.1| (PREDICTED: uncharacterized protein LOC105789517 [Gossypium raimondii])

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-20
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = 1 

Query: 3   LQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFID- 62
           LQ ADR +  P+GKIE +LV+VDKF+F A+F+IL+++AD++V IILGR+FL+TG   ID 
Sbjct: 22  LQLADRLLAYPKGKIEDILVRVDKFIFPAEFIILEFEADKEVSIILGRTFLATGRTLIDV 81

Query: 63  HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIE-------------------SLGWDY 122
            +GELTM +  +K+  N++ AMKFP   E CS +E                   +LG   
Sbjct: 82  KKGELTMRVQDDKLMFNILKAMKFPDPMEDCSVMEELEALVCLERNSKEDPLENTLGSIP 141

Query: 123 YEEEASFELFMDPENENEEINVVSDARK 131
           +E+E S E  +    E + I V+   +K
Sbjct: 142 FEDEKSDEADLTDHQEEQLITVLKKFKK 169

The following BLAST results are available for this feature:
BLAST of MELO3C013460T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AZ88_VITVI2.2e-2051.69Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1[more]
A0A151R6C5_CAJCA1.2e-1838.36Uncharacterized protein OS=Cajanus cajan GN=KK1_040614 PE=4 SV=1[more]
U5CWW5_AMBTC1.6e-1840.24Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=... [more]
A0A151RCP0_CAJCA2.7e-1837.58Uncharacterized protein OS=Cajanus cajan GN=KK1_038280 PE=4 SV=1[more]
A0A151QP19_CAJCA7.8e-1836.91Uncharacterized protein OS=Cajanus cajan GN=KK1_047377 PE=4 SV=1[more]
BLAST of MELO3C013460T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130345|ref|XP_008465121.1|3.7e-2970.00PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo][more]
gi|659093662|ref|XP_008447648.1|2.7e-2768.69PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo][more]
gi|659111569|ref|XP_008455795.1|1.6e-2464.00PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo][more]
gi|985438636|ref|XP_015383625.1|8.3e-2144.59PREDICTED: uncharacterized protein LOC107176093 [Citrus sinensis][more]
gi|823144988|ref|XP_012472341.1|3.2e-2041.22PREDICTED: uncharacterized protein LOC105789517 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C013460MELO3C013460gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C013460T1MELO3C013460T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C013460T1.cds1MELO3C013460T1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 1..64
score: 5.1
NoneNo IPR availablePANTHERPTHR33067:SF2SUBFAMILY NOT NAMEDcoord: 1..64
score: 5.1