MELO3C013460 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013460
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTransposable element protein, putative
Locationchr11 : 14194096 .. 14194608 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCTTCAATTTGCTGATAGATCTATTACTAAGCCTGAGGGCAAGATTGAACACGTTTTGGTCAAGGTGGACAAATTTTTATTTTCTGCAGACTTTCTCATTCTGGATTACAAAGCTGATCGGAAGGTTCCTATTATCTTAGGGCGATCATTCCTATCAACTGGTCATCCCTTTATTGATCACCAAGGGGAATTGACAATGCATCTCAATTATGAAAAAATCAAGTTAAATGTTGTCAATGCAATGAAGTTCCCTGTTAATGATGAGAGTTGCAGTGCAATAGAGTCCTTAGGTTGGGACTATTATGAGGAAGAAGCTTCTTTTGAATTGTTCATGGACCCTGAGAATGAAAATGAAGAAATAAACGTCGTATCTGACGCGAGGAAGTTTGAGTCTTTAGATCTGCAAACCAAAGGCAAGAAGAAAACTATGCCATCAGTGAGAACCACTAGAACTAGAACTCAAGTTGCTACCCAACCACTTGAAATATGCATATTCGGGGGAGAATAA

mRNA sequence

ATGAGGCTTCAATTTGCTGATAGATCTATTACTAAGCCTGAGGGCAAGATTGAACACGTTTTGGTCAAGGTGGACAAATTTTTATTTTCTGCAGACTTTCTCATTCTGGATTACAAAGCTGATCGGAAGGTTCCTATTATCTTAGGGCGATCATTCCTATCAACTGGTCATCCCTTTATTGATCACCAAGGGGAATTGACAATGCATCTCAATTATGAAAAAATCAAGTTAAATGTTGTCAATGCAATGAAGTTCCCTGTTAATGATGAGAGTTGCAGTGCAATAGAGTCCTTAGGTTGGGACTATTATGAGGAAGAAGCTTCTTTTGAATTGTTCATGGACCCTGAGAATGAAAATGAAGAAATAAACGTCGTATCTGACGCGAGGAAGTTTGAGTCTTTAGATCTGCAAACCAAAGGCAAGAAGAAAACTATGCCATCAGTGAGAACCACTAGAACTAGAACTCAAGTTGCTACCCAACCACTTGAAATATGCATATTCGGGGGAGAATAA

Coding sequence (CDS)

ATGAGGCTTCAATTTGCTGATAGATCTATTACTAAGCCTGAGGGCAAGATTGAACACGTTTTGGTCAAGGTGGACAAATTTTTATTTTCTGCAGACTTTCTCATTCTGGATTACAAAGCTGATCGGAAGGTTCCTATTATCTTAGGGCGATCATTCCTATCAACTGGTCATCCCTTTATTGATCACCAAGGGGAATTGACAATGCATCTCAATTATGAAAAAATCAAGTTAAATGTTGTCAATGCAATGAAGTTCCCTGTTAATGATGAGAGTTGCAGTGCAATAGAGTCCTTAGGTTGGGACTATTATGAGGAAGAAGCTTCTTTTGAATTGTTCATGGACCCTGAGAATGAAAATGAAGAAATAAACGTCGTATCTGACGCGAGGAAGTTTGAGTCTTTAGATCTGCAAACCAAAGGCAAGAAGAAAACTATGCCATCAGTGAGAACCACTAGAACTAGAACTCAAGTTGCTACCCAACCACTTGAAATATGCATATTCGGGGGAGAATAA

Protein sequence

MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFIDHQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENENEEINVVSDARKFESLDLQTKGKKKTMPSVRTTRTRTQVATQPLEICIFGGE*
Homology
[Close]
BLAST of MELO3C013460 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.2e-20
Identity = 61/118 (51.69%), Postives = 74/118 (62.71%), Query Frame = 1 

Query: 3   LQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFID- 62
           LQ ADRSI  P G IE VLVKVDKFLF  DF++LD + DR VP+ILGR FL+T    ID 
Sbjct: 399 LQLADRSIKHPRGIIEDVLVKVDKFLFPIDFIVLDMEEDRDVPLILGRPFLATSRTLIDF 458

Query: 63  HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENEN 120
           HQG+L + +  E++  NV  AMKFP N ++C AI  L  D    E   E F +   EN
Sbjct: 459 HQGKLILRVQDEQVTFNVFEAMKFPSNVDACFAINVL--DRVVAETFHETFPNSPLEN 514

[Close]
BLAST of MELO3C013460 vs. TrEMBL
Match: A0A151R6C5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_040614 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 56/146 (38.36%), Postives = 86/146 (58.90%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQ ADRSI  P G +E+++VKVDKF+F  DF+++D + D +VP+ILGR F+ T    I
Sbjct: 317 MTLQLADRSIKLPHGIVEYMIVKVDKFMFPVDFVVMDMEEDLEVPLILGRPFMKTARVII 376

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENE- 120
           D   G+L + +  E++  NV  AMKFP  ++ C  I+ L   Y E +++F+     E   
Sbjct: 377 DMDDGKLKVRVQDEEVNFNVFEAMKFPKGNKDCFRIDVLDDVYLETQSNFKNSSPLEKAL 436

Query: 121 ---NEEINVVSDARKFESLDLQTKGK 142
              +EE++ V D    + +D   KG+
Sbjct: 437 SVCDEELDKVIDKEVQDVIDALNKGE 462

[Close]
BLAST of MELO3C013460 vs. TrEMBL
Match: U5CWW5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 66/164 (40.24%), Postives = 90/164 (54.88%), Query Frame = 1 

Query: 3   LQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFID- 62
           LQ ADRS+  PEGKIE VLV+VDKF+F ADF+ILDY+ DR+VPIILGR FL+TG   ID 
Sbjct: 143 LQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEEDREVPIILGRPFLATGRTLIDV 202

Query: 63  HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENENEE 122
            +GELTM    E+    V + ++ P     C AI  +  +  EE      F + +   ++
Sbjct: 203 EKGELTMRAQDEQATFKVFHPIRAPDAIGECLAIGDMDPNMVEESK----FKNSKKVRKK 262

Query: 123 INVVSDARKFE--------SLDLQTKGKKKTMPSVRTTRTRTQV 158
           I +   A+  E        S D +   KKK        + R+Q+
Sbjct: 263 IPLKEIAKDHEPQESKDKTSFDPKKPPKKKRKKKKLVEKFRSQM 302

[Close]
BLAST of MELO3C013460 vs. TrEMBL
Match: A0A151RCP0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_038280 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQ ADRSI  P G +E ++VKVDKF+F  DF+++D + D +VP+ILGR F+ T    I
Sbjct: 258 MTLQLADRSIKLPHGIVEDMIVKVDKFMFPVDFVVMDMEEDLEVPLILGRLFMKTARVII 317

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENE- 120
           D   G+L + +  E++  NV  AMKFP  ++ C  I+ L   Y E +++F+     E   
Sbjct: 318 DLDDGKLKVRVQDEEVNFNVFEAMKFPKGNKDCFRIDVLDDLYLETQSNFKNSSPLEKAL 377

Query: 121 ---NEEINVVSDARKFESLDLQTKGKKKT 145
              +EE++ V D    + +D   KG+  +
Sbjct: 378 SMFDEELDKVIDTEVQDVIDALNKGESSS 406

[Close]
BLAST of MELO3C013460 vs. TrEMBL
Match: A0A151QP19_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_047377 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.8e-18
Identity = 55/149 (36.91%), Postives = 85/149 (57.05%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQ ADRSI  P G +E ++VKVDKF+F  DF+++D + D +VP+ILGR F+ T    I
Sbjct: 68  MTLQLADRSIKLPHGIVEDMIVKVDKFMFPVDFVVMDMEEDVEVPLILGRPFMKTARVII 127

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENE- 120
           D   G + + +  E++  NV  AMKFP  ++ C  I+ L   Y E +++F+     E   
Sbjct: 128 DMDDGNMKVRVQDEEVNFNVFEAMKFPKGNKDCFRIDVLDDVYLETQSNFKNSSPLEKAL 187

Query: 121 ---NEEINVVSDARKFESLDLQTKGKKKT 145
              +EE++ V D    + +D   KG+  +
Sbjct: 188 SMFDEELDKVIDKEVQDVVDALNKGESSS 216

[Close]
BLAST of MELO3C013460 vs. NCBI nr
Match: gi|659130345|ref|XP_008465121.1| (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-29
Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           MRLQF DRSI K EGKIE +LVKVDKFLF ADF+ILDY+A+++VPII GR FLSTGH  I
Sbjct: 80  MRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFLSTGHALI 139

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLG 100
           D HQGELTM  N +++K NV+NAMKFP +D++ S IESLG
Sbjct: 140 DVHQGELTMRFN-DEVKFNVMNAMKFPTDDKNYSMIESLG 178

[Close]
BLAST of MELO3C013460 vs. NCBI nr
Match: gi|659093662|ref|XP_008447648.1| (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-27
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPF- 60
           MR Q ADRSIT P+GKIE VLVKVDKFLF ADF+ILDY+AD +V IIL R FLSTG    
Sbjct: 91  MRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFLSTGRALT 150

Query: 61  IDHQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESL 99
             HQGELT+  N ++IK NV+NAMKFP++DESC+ IESL
Sbjct: 151 YIHQGELTVFFNNKEIKFNVINAMKFPLDDESCNTIESL 189

[Close]
BLAST of MELO3C013460 vs. NCBI nr
Match: gi|659111569|ref|XP_008455795.1| (PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-24
Identity = 64/100 (64.00%), Postives = 76/100 (76.00%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQF DRSIT+PEGKI+ VL+KVDKFLF ADF+ILDY+ADR+VPIIL  SFL TGH  I
Sbjct: 100 MVLQFVDRSITRPEGKIDDVLIKVDKFLFLADFIILDYEADREVPIILELSFLRTGHALI 159

Query: 61  D-HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLG 100
           D HQ ELTM LN +KI  N+VNAM  P+  ++   +  LG
Sbjct: 160 DVHQWELTMLLNDQKISFNIVNAMNSPLMLKTAMQLNLLG 199

[Close]
BLAST of MELO3C013460 vs. NCBI nr
Match: gi|985438636|ref|XP_015383625.1| (PREDICTED: uncharacterized protein LOC107176093 [Citrus sinensis])

HSP 1 Score: 109.0 bits (271), Expect = 8.3e-21
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 1 

Query: 1   MRLQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFI 60
           M LQ ADRS   PEGKIE VLVKVDKF+F  DF++LD++AD++VPIILGR FL+TG   I
Sbjct: 59  MTLQLADRSHVYPEGKIEDVLVKVDKFIFPVDFIVLDFEADKEVPIILGRPFLATGKTLI 118

Query: 61  DHQ-GELTMHLNYEKIKLNVVNAMKFPVNDESCSAIESLGWDYYEEEASFELFMDPENEN 120
           + Q GELTM +N +++K NV++AMK     E C+ I  + +   E+  S           
Sbjct: 119 NVQKGELTMRVNNQQVKFNVLDAMKSSDEIEDCNFISVVDFVVAEKLHSC-------CSE 178

Query: 121 EEINVVS----DARKFESLDLQTKGKKK 144
           E IN V+    D    E+ ++   G+K+
Sbjct: 179 EAINAVTLEELDGEDHEAANITWSGEKQ 199

[Close]
BLAST of MELO3C013460 vs. NCBI nr
Match: gi|823144988|ref|XP_012472341.1| (PREDICTED: uncharacterized protein LOC105789517 [Gossypium raimondii])

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-20
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = 1 

Query: 3   LQFADRSITKPEGKIEHVLVKVDKFLFSADFLILDYKADRKVPIILGRSFLSTGHPFID- 62
           LQ ADR +  P+GKIE +LV+VDKF+F A+F+IL+++AD++V IILGR+FL+TG   ID 
Sbjct: 22  LQLADRLLAYPKGKIEDILVRVDKFIFPAEFIILEFEADKEVSIILGRTFLATGRTLIDV 81

Query: 63  HQGELTMHLNYEKIKLNVVNAMKFPVNDESCSAIE-------------------SLGWDY 122
            +GELTM +  +K+  N++ AMKFP   E CS +E                   +LG   
Sbjct: 82  KKGELTMRVQDDKLMFNILKAMKFPDPMEDCSVMEELEALVCLERNSKEDPLENTLGSIP 141

Query: 123 YEEEASFELFMDPENENEEINVVSDARK 131
           +E+E S E  +    E + I V+   +K
Sbjct: 142 FEDEKSDEADLTDHQEEQLITVLKKFKK 169

The following BLAST results are available for this feature:
BLAST of MELO3C013460 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AZ88_VITVI2.2e-2051.69Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1[more]
A0A151R6C5_CAJCA1.2e-1838.36Uncharacterized protein OS=Cajanus cajan GN=KK1_040614 PE=4 SV=1[more]
U5CWW5_AMBTC1.6e-1840.24Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=... [more]
A0A151RCP0_CAJCA2.7e-1837.58Uncharacterized protein OS=Cajanus cajan GN=KK1_038280 PE=4 SV=1[more]
A0A151QP19_CAJCA7.8e-1836.91Uncharacterized protein OS=Cajanus cajan GN=KK1_047377 PE=4 SV=1[more]
BLAST of MELO3C013460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130345|ref|XP_008465121.1|3.7e-2970.00PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo][more]
gi|659093662|ref|XP_008447648.1|2.7e-2768.69PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo][more]
gi|659111569|ref|XP_008455795.1|1.6e-2464.00PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo][more]
gi|985438636|ref|XP_015383625.1|8.3e-2144.59PREDICTED: uncharacterized protein LOC107176093 [Citrus sinensis][more]
gi|823144988|ref|XP_012472341.1|3.2e-2041.22PREDICTED: uncharacterized protein LOC105789517 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013460T1MELO3C013460T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 1..64
score: 5.1
NoneNo IPR availablePANTHERPTHR33067:SF2SUBFAMILY NOT NAMEDcoord: 1..64
score: 5.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013460Cucurbita pepo (Zucchini)cpemeB213
MELO3C013460Cucurbita pepo (Zucchini)cpemeB251
MELO3C013460Cucurbita pepo (Zucchini)cpemeB257
MELO3C013460Cucurbita pepo (Zucchini)cpemeB601
MELO3C013460Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C013460Bottle gourd (USVL1VR-Ls)lsimeB088
MELO3C013460Cucumber (Gy14) v2cgybmeB367
MELO3C013460Cucumber (Gy14) v2cgybmeB454
MELO3C013460Silver-seed gourdcarmeB0197
MELO3C013460Silver-seed gourdcarmeB0350
MELO3C013460Silver-seed gourdcarmeB0352
MELO3C013460Cucumber (Chinese Long) v3cucmeB431
MELO3C013460Cucumber (Chinese Long) v3cucmeB534
MELO3C013460Watermelon (97103) v2mewmbB094
MELO3C013460Watermelon (97103) v2mewmbB114
MELO3C013460Wax gourdmewgoB107
MELO3C013460Wax gourdmewgoB126
MELO3C013460Melon (DHL92) v3.5.1memeB041
MELO3C013460Cucumber (Gy14) v1cgymeB119
MELO3C013460Cucumber (Gy14) v1cgymeB179
MELO3C013460Cucurbita maxima (Rimu)cmameB085
MELO3C013460Cucurbita maxima (Rimu)cmameB451
MELO3C013460Cucurbita maxima (Rimu)cmameB494
MELO3C013460Cucurbita maxima (Rimu)cmameB506
MELO3C013460Cucurbita moschata (Rifu)cmomeB081
MELO3C013460Cucurbita moschata (Rifu)cmomeB443
MELO3C013460Cucurbita moschata (Rifu)cmomeB482
MELO3C013460Wild cucumber (PI 183967)cpimeB419
MELO3C013460Wild cucumber (PI 183967)cpimeB522
MELO3C013460Cucumber (Chinese Long) v2cumeB425
MELO3C013460Cucumber (Chinese Long) v2cumeB517
MELO3C013460Watermelon (Charleston Gray)mewcgB092
MELO3C013460Watermelon (Charleston Gray)mewcgB112
MELO3C013460Watermelon (97103) v1mewmB110