MELO3C013457T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C013457T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionChromosome 3B, genomic scaffold, cultivar Chinese Spring
Locationchr11 : 14162298 .. 14162693 (-)
Sequence length396
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGGAAAAAGGAAGTGTTAGAGAAAGAACAAACTCTACCTCTTCAAAGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCTTCACCTATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCGACATACGGATTGGGTCTCTCACGGAGTCATCAACTTCACCTAGGCCTTCGACCAATCTTATCCGTCCTTTTGACGGAGTCGTTCAAATGAGGCCTCTTGCCTTTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTATCACCCCTGATAAAGCGGTTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAGCCTATCCTTGTTTATGA

mRNA sequence

ATGAGTTTGGAAAAAGGAAGTGTTAGAGAAAGAACAAACTCTACCTCTTCAAAGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCTTCACCTATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCGACATACGGATTGGGTCTCTCACGGAGTCATCAACTTCACCTAGGCCTTCGACCAATCTTATCCGTCCTTTTGACGGAGTCGTTCAAATGAGGCCTCTTGCCTTTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTATCACCCCTGATAAAGCGGTTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAGCCTATCCTTGTTTATGA

Coding sequence (CDS)

ATGAGTTTGGAAAAAGGAAGTGTTAGAGAAAGAACAAACTCTACCTCTTCAAAGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCTTCACCTATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCGACATACGGATTGGGTCTCTCACGGAGTCATCAACTTCACCTAGGCCTTCGACCAATCTTATCCGTCCTTTTGACGGAGTCGTTCAAATGAGGCCTCTTGCCTTTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTATCACCCCTGATAAAGCGGTTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAGCCTATCCTTGTTTATGA

Protein sequence

MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIGSLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYSQAITPDKAVCAKTRDQILFSKAYPCL*
Homology
[Close]
BLAST of MELO3C013457T1 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 93/127 (73.23%), Postives = 99/127 (77.95%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MS EKGS R RTNSTSSKG+RPSSSSNS PSPMSA QY MDLGFT VTRSRSR S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYSQAITPDKAVCAKTRD 120
           S TESST PRPS NLIRP  GV+QMRP A PSSNRESSTPPTTYSQA+T DK    +   
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 QILFSKA 128
           +  F K+
Sbjct: 121 KSYFQKS 127

[Close]
BLAST of MELO3C013457T1 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MSLE+GSVR R NS SS+GN PSS SN APSPMSADQYAM+LGFTTVT SR+RSSDI+IG
Sbjct: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61  -SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYS 106
            + TESST PRPSTNLIRP   V+Q RP A   SNR+SS PPTTYS
Sbjct: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

[Close]
BLAST of MELO3C013457T1 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 97/127 (76.38%), Postives = 103/127 (81.10%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MS EKGS R RTNSTSSKGNRPSSSSN APSPMSADQYAMDL FTT+TRSRSRSS IRIG
Sbjct: 1   MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIG 60

Query: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYSQAITPDKAVCAKTRD 120
           S TESST PRPS NLIR  DGVVQMRP A PSSNRESSTPPTTYS  +TPDK    + + 
Sbjct: 61  SPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPPTTYSHTVTPDKRFVPRPKI 120

Query: 121 QILFSKA 128
           +  F K+
Sbjct: 121 KSYFQKS 127

[Close]
BLAST of MELO3C013457T1 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-40
Identity = 93/127 (73.23%), Postives = 99/127 (77.95%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MS EKGS R RTNSTSSKG+RPSSSSNS PSPMSA QY MDLGFT VTRSRSR S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYSQAITPDKAVCAKTRD 120
           S TESST PRPS NLIRP  GV+QMRP A PSSNRESSTPPTTYSQA+T DK    +   
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 QILFSKA 128
           +  F K+
Sbjct: 121 KSYFQKS 127

[Close]
BLAST of MELO3C013457T1 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MSLE+GSVR R NS SS+GN PSS SN APSPMSADQYAM+LGFTTVT SR+RSSDI+IG
Sbjct: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61  -SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYS 106
            + TESST PRPSTNLIRP   V+Q RP A   SNR+SS PPTTYS
Sbjct: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

The following BLAST results are available for this feature:
BLAST of MELO3C013457T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCE6_CUCME1.5e-4073.23Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA1.5e-3274.53Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of MELO3C013457T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098578|ref|XP_008450208.1|1.2e-4376.38PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|307136323|gb|ADN34145.1|2.1e-4073.23hypothetical protein [Cucumis melo subsp. melo][more]
gi|700189415|gb|KGN44648.1|2.1e-3274.53hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C013457MELO3C013457gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C013457T1MELO3C013457T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C013457T1.cds1MELO3C013457T1.cds1CDS