MELO3C013457 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013457
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionChromosome 3B, genomic scaffold, cultivar Chinese Spring
Locationchr11 : 14162298 .. 14162693 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGGAAAAAGGAAGTGTTAGAGAAAGAACAAACTCTACCTCTTCAAAGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCTTCACCTATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCGACATACGGATTGGGTCTCTCACGGAGTCATCAACTTCACCTAGGCCTTCGACCAATCTTATCCGTCCTTTTGACGGAGTCGTTCAAATGAGGCCTCTTGCCTTTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTATCACCCCTGATAAAGCGGTTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAGCCTATCCTTGTTTATGA

mRNA sequence

ATGAGTTTGGAAAAAGGAAGTGTTAGAGAAAGAACAAACTCTACCTCTTCAAAGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCTTCACCTATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCGACATACGGATTGGGTCTCTCACGGAGTCATCAACTTCACCTAGGCCTTCGACCAATCTTATCCGTCCTTTTGACGGAGTCGTTCAAATGAGGCCTCTTGCCTTTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTATCACCCCTGATAAAGCGGTTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAGCCTATCCTTGTTTATGA

Coding sequence (CDS)

ATGAGTTTGGAAAAAGGAAGTGTTAGAGAAAGAACAAACTCTACCTCTTCAAAGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCTTCACCTATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCGACATACGGATTGGGTCTCTCACGGAGTCATCAACTTCACCTAGGCCTTCGACCAATCTTATCCGTCCTTTTGACGGAGTCGTTCAAATGAGGCCTCTTGCCTTTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGCTATCACCCCTGATAAAGCGGTTTGTGCCAAGACCCGAGATCAAATCTTATTTTCAAAAGCCTATCCTTGTTTATGA

Protein sequence

MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIGSLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYSQAITPDKAVCAKTRDQILFSKAYPCL*
Homology
[Close]
BLAST of MELO3C013457 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 93/127 (73.23%), Postives = 99/127 (77.95%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MS EKGS R RTNSTSSKG+RPSSSSNS PSPMSA QY MDLGFT VTRSRSR S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYSQAITPDKAVCAKTRD 120
           S TESST PRPS NLIRP  GV+QMRP A PSSNRESSTPPTTYSQA+T DK    +   
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 QILFSKA 128
           +  F K+
Sbjct: 121 KSYFQKS 127

[Close]
BLAST of MELO3C013457 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-32
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MSLE+GSVR R NS SS+GN PSS SN APSPMSADQYAM+LGFTTVT SR+RSSDI+IG
Sbjct: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61  -SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYS 106
            + TESST PRPSTNLIRP   V+Q RP A   SNR+SS PPTTYS
Sbjct: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

[Close]
BLAST of MELO3C013457 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 97/127 (76.38%), Postives = 103/127 (81.10%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MS EKGS R RTNSTSSKGNRPSSSSN APSPMSADQYAMDL FTT+TRSRSRSS IRIG
Sbjct: 1   MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIG 60

Query: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYSQAITPDKAVCAKTRD 120
           S TESST PRPS NLIR  DGVVQMRP A PSSNRESSTPPTTYS  +TPDK    + + 
Sbjct: 61  SPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPPTTYSHTVTPDKRFVPRPKI 120

Query: 121 QILFSKA 128
           +  F K+
Sbjct: 121 KSYFQKS 127

[Close]
BLAST of MELO3C013457 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-40
Identity = 93/127 (73.23%), Postives = 99/127 (77.95%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MS EKGS R RTNSTSSKG+RPSSSSNS PSPMSA QY MDLGFT VTRSRSR S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYSQAITPDKAVCAKTRD 120
           S TESST PRPS NLIRP  GV+QMRP A PSSNRESSTPPTTYSQA+T DK    +   
Sbjct: 61  SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEI 120

Query: 121 QILFSKA 128
           +  F K+
Sbjct: 121 KSYFQKS 127

[Close]
BLAST of MELO3C013457 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-32
Identity = 79/106 (74.53%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 1   MSLEKGSVRERTNSTSSKGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRSRSSDIRIG 60
           MSLE+GSVR R NS SS+GN PSS SN APSPMSADQYAM+LGFTTVT SR+RSSDI+IG
Sbjct: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61  -SLTESSTSPRPSTNLIRPFDGVVQMRPLAFPSSNRESSTPPTTYS 106
            + TESST PRPSTNLIRP   V+Q RP A   SNR+SS PPTTYS
Sbjct: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

The following BLAST results are available for this feature:
BLAST of MELO3C013457 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCE6_CUCME1.5e-4073.23Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA1.5e-3274.53Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of MELO3C013457 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098578|ref|XP_008450208.1|1.2e-4376.38PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|307136323|gb|ADN34145.1|2.1e-4073.23hypothetical protein [Cucumis melo subsp. melo][more]
gi|700189415|gb|KGN44648.1|2.1e-3274.53hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013457T1MELO3C013457T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013457Silver-seed gourdcarmeB0197
MELO3C013457Silver-seed gourdcarmeB0350
MELO3C013457Cucumber (Chinese Long) v3cucmeB431
MELO3C013457Cucumber (Chinese Long) v3cucmeB534
MELO3C013457Watermelon (97103) v2mewmbB094
MELO3C013457Watermelon (97103) v2mewmbB114
MELO3C013457Wax gourdmewgoB107
MELO3C013457Wax gourdmewgoB126
MELO3C013457Melon (DHL92) v3.5.1memeB041
MELO3C013457Cucumber (Gy14) v1cgymeB119
MELO3C013457Cucumber (Gy14) v1cgymeB179
MELO3C013457Cucurbita maxima (Rimu)cmameB085
MELO3C013457Cucurbita maxima (Rimu)cmameB451
MELO3C013457Cucurbita maxima (Rimu)cmameB494
MELO3C013457Cucurbita maxima (Rimu)cmameB506
MELO3C013457Cucurbita moschata (Rifu)cmomeB081
MELO3C013457Cucurbita moschata (Rifu)cmomeB443
MELO3C013457Cucurbita moschata (Rifu)cmomeB482
MELO3C013457Wild cucumber (PI 183967)cpimeB419
MELO3C013457Wild cucumber (PI 183967)cpimeB522
MELO3C013457Cucumber (Chinese Long) v2cumeB425
MELO3C013457Cucumber (Chinese Long) v2cumeB517
MELO3C013457Watermelon (Charleston Gray)mewcgB092
MELO3C013457Watermelon (Charleston Gray)mewcgB112
MELO3C013457Watermelon (97103) v1mewmB110
MELO3C013457Cucurbita pepo (Zucchini)cpemeB213
MELO3C013457Cucurbita pepo (Zucchini)cpemeB251
MELO3C013457Cucurbita pepo (Zucchini)cpemeB257
MELO3C013457Cucurbita pepo (Zucchini)cpemeB601
MELO3C013457Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C013457Bottle gourd (USVL1VR-Ls)lsimeB088
MELO3C013457Cucumber (Gy14) v2cgybmeB367
MELO3C013457Cucumber (Gy14) v2cgybmeB454