MELO3C013388T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C013388T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNeurogenic locus notch homolog protein 1
Locationchr1 : 16372668 .. 16372967 (-)
Sequence length300
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACGGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGATTGGGTCTCCAACGGAGTCATCAACTCCACCTAAGCCTTCGACCAATCTTATCCGTCCTTCTGGCGGAGTCGTTCAAATGAGGTCTCCTGTCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGTTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCAAGATCAAATCTTATTTTCAAAAGCCTATCGTAGTTTTATGA

mRNA sequence

ATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACGGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGATTGGGTCTCCAACGGAGTCATCAACTCCACCTAAGCCTTCGACCAATCTTATCCGTCCTTCTGGCGGAGTCGTTCAAATGAGGTCTCCTGTCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGTTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCAAGATCAAATCTTATTTTCAAAAGCCTATCGTAGTTTTATGA

Coding sequence (CDS)

ATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACGGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGATTGGGTCTCCAACGGAGTCATCAACTCCACCTAAGCCTTCGACCAATCTTATCCGTCCTTCTGGCGGAGTCGTTCAAATGAGGTCTCCTGTCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGTTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCAAGATCAAATCTTATTTTCAAAAGCCTATCGTAGTTTTATGA

Protein sequence

MSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPKPSTNLIRPSGGVVQMRSPVSPSSNRESSTPPTTYSQVVTPDKRFVPRPKIKSYFQKPIVVL*
Homology
[Close]
BLAST of MELO3C013388T1 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-38
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 1 

Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPKPSTNLIRPSGGVVQMRSPVSPS 60
           MSA QY MDLGFT VTRSRSR SSI IGSPTESSTPP+PS NLIRPSGGV+QMR P SPS
Sbjct: 33  MSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPS 92

Query: 61  SNRESSTPPTTYSQVVTPDKRFVPRPKIKSYFQKPIVV 99
           SNRESSTPPTTYSQ VT DKRFVPRP+IKSYFQK IVV
Sbjct: 93  SNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSIVV 130

[Close]
BLAST of MELO3C013388T1 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-20
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 1 

Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIG-SPTESSTPPKPSTNLIRPSGGVVQMRSPVSP 60
           MSADQYAM+LGFTTVT SR+RSS I+IG + TESSTPP+PSTNLIRPSG V+Q R   S 
Sbjct: 35  MSADQYAMNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASS 94

Query: 61  SSNRESSTPPTTYS 74
            SNR+SS PPTTYS
Sbjct: 95  LSNRDSSPPPTTYS 108

[Close]
BLAST of MELO3C013388T1 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 8.8e-39
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 1 

Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPKPSTNLIRPSGGVVQMRSPVSPS 60
           MSADQYAMDL FTT+TRSRSRSS IRIGSPTESSTPP+PS NLIR S GVVQMR   SPS
Sbjct: 33  MSADQYAMDLEFTTITRSRSRSSGIRIGSPTESSTPPRPSANLIRLSDGVVQMRPHASPS 92

Query: 61  SNRESSTPPTTYSQVVTPDKRFVPRPKIKSYFQKPIVV 99
           SNRESSTPPTTYS  VTPDKRFVPRPKIKSYFQK IVV
Sbjct: 93  SNRESSTPPTTYSHTVTPDKRFVPRPKIKSYFQKSIVV 130

[Close]
BLAST of MELO3C013388T1 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-38
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 1 

Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPKPSTNLIRPSGGVVQMRSPVSPS 60
           MSA QY MDLGFT VTRSRSR SSI IGSPTESSTPP+PS NLIRPSGGV+QMR P SPS
Sbjct: 33  MSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPS 92

Query: 61  SNRESSTPPTTYSQVVTPDKRFVPRPKIKSYFQKPIVV 99
           SNRESSTPPTTYSQ VT DKRFVPRP+IKSYFQK IVV
Sbjct: 93  SNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSIVV 130

[Close]
BLAST of MELO3C013388T1 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-20
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 1 

Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIG-SPTESSTPPKPSTNLIRPSGGVVQMRSPVSP 60
           MSADQYAM+LGFTTVT SR+RSS I+IG + TESSTPP+PSTNLIRPSG V+Q R   S 
Sbjct: 35  MSADQYAMNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASS 94

Query: 61  SSNRESSTPPTTYS 74
            SNR+SS PPTTYS
Sbjct: 95  LSNRDSSPPPTTYS 108

The following BLAST results are available for this feature:
BLAST of MELO3C013388T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCE6_CUCME1.8e-3885.71Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA3.7e-2074.32Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of MELO3C013388T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098578|ref|XP_008450208.1|8.8e-3986.73PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|307136323|gb|ADN34145.1|2.6e-3885.71hypothetical protein [Cucumis melo subsp. melo][more]
gi|700189415|gb|KGN44648.1|5.4e-2074.32hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C013388MELO3C013388gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C013388T1MELO3C013388T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C013388T1.cds1MELO3C013388T1.cds1CDS