MELO3C013388 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013388
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Neurogenic locus notch homolog protein 1
Location	chr1 : 16372668 .. 16372967 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACGGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGATTGGGTCTCCAACGGAGTCATCAACTCCACCTAAGCCTTCGACCAATCTTATCCGTCCTTCTGGCGGAGTCGTTCAAATGAGGTCTCCTGTCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGTTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCAAGATCAAATCTTATTTTCAAAAGCCTATCGTAGTTTTATGA

mRNA sequence

ATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACGGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGATTGGGTCTCCAACGGAGTCATCAACTCCACCTAAGCCTTCGACCAATCTTATCCGTCCTTCTGGCGGAGTCGTTCAAATGAGGTCTCCTGTCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGTTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCAAGATCAAATCTTATTTTCAAAAGCCTATCGTAGTTTTATGA

Coding sequence (CDS)

ATGAGTGCAGATCAATATGCAATGGATTTAGGGTTTACCACGGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGATTGGGTCTCCAACGGAGTCATCAACTCCACCTAAGCCTTCGACCAATCTTATCCGTCCTTCTGGCGGAGTCGTTCAAATGAGGTCTCCTGTCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAGGTTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCAAGATCAAATCTTATTTTCAAAAGCCTATCGTAGTTTTATGA

Protein sequence

MSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPKPSTNLIRPSGGVVQMRSPVSPSSNRESSTPPTTYSQVVTPDKRFVPRPKIKSYFQKPIVVL*

Homology

[Close]

BLAST of MELO3C013388 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-38
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPKPSTNLIRPSGGVVQMRSPVSPS 60
           MSA QY MDLGFT VTRSRSR SSI IGSPTESSTPP+PS NLIRPSGGV+QMR P SPS
Sbjct: 33  MSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPS 92

Query: 61  SNRESSTPPTTYSQVVTPDKRFVPRPKIKSYFQKPIVV 99
           SNRESSTPPTTYSQ VT DKRFVPRP+IKSYFQK IVV
Sbjct: 93  SNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSIVV 130

[Close]

BLAST of MELO3C013388 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-20
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIG-SPTESSTPPKPSTNLIRPSGGVVQMRSPVSP 60
           MSADQYAM+LGFTTVT SR+RSS I+IG + TESSTPP+PSTNLIRPSG V+Q R   S 
Sbjct: 35  MSADQYAMNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASS 94

Query: 61  SSNRESSTPPTTYS 74
            SNR+SS PPTTYS
Sbjct: 95  LSNRDSSPPPTTYS 108

[Close]

BLAST of MELO3C013388 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 8.8e-39
Identity = 85/98 (86.73%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPKPSTNLIRPSGGVVQMRSPVSPS 60
           MSADQYAMDL FTT+TRSRSRSS IRIGSPTESSTPP+PS NLIR S GVVQMR   SPS
Sbjct: 33  MSADQYAMDLEFTTITRSRSRSSGIRIGSPTESSTPPRPSANLIRLSDGVVQMRPHASPS 92

Query: 61  SNRESSTPPTTYSQVVTPDKRFVPRPKIKSYFQKPIVV 99
           SNRESSTPPTTYS  VTPDKRFVPRPKIKSYFQK IVV
Sbjct: 93  SNRESSTPPTTYSHTVTPDKRFVPRPKIKSYFQKSIVV 130

[Close]

BLAST of MELO3C013388 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-38
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 1


Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPKPSTNLIRPSGGVVQMRSPVSPS 60
           MSA QY MDLGFT VTRSRSR SSI IGSPTESSTPP+PS NLIRPSGGV+QMR P SPS
Sbjct: 33  MSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPS 92

Query: 61  SNRESSTPPTTYSQVVTPDKRFVPRPKIKSYFQKPIVV 99
           SNRESSTPPTTYSQ VT DKRFVPRP+IKSYFQK IVV
Sbjct: 93  SNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSIVV 130

[Close]

BLAST of MELO3C013388 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 5.4e-20
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 1


Query: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIG-SPTESSTPPKPSTNLIRPSGGVVQMRSPVSP 60
           MSADQYAM+LGFTTVT SR+RSS I+IG + TESSTPP+PSTNLIRPSG V+Q R   S 
Sbjct: 35  MSADQYAMNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASS 94

Query: 61  SSNRESSTPPTTYS 74
            SNR+SS PPTTYS
Sbjct: 95  LSNRDSSPPPTTYS 108

The following BLAST results are available for this feature:

BLAST of MELO3C013388 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCE6_CUCME	1.8e-38	85.71	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0K595_CUCSA	3.7e-20	74.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1	[more]

BLAST of MELO3C013388 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098578\|ref\|XP_008450208.1\|	8.8e-39	86.73	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]
gi\|307136323\|gb\|ADN34145.1\|	2.6e-38	85.71	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700189415\|gb\|KGN44648.1\|	5.4e-20	74.32	hypothetical protein Csa_7G361530 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013388T1	MELO3C013388T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013388	Cucumber (Gy14) v1	cgymeB302
MELO3C013388	Cucumber (Gy14) v1	cgymeB622
MELO3C013388	Cucurbita maxima (Rimu)	cmameB092
MELO3C013388	Cucurbita maxima (Rimu)	cmameB462
MELO3C013388	Cucurbita maxima (Rimu)	cmameB510
MELO3C013388	Cucurbita maxima (Rimu)	cmameB563
MELO3C013388	Cucurbita moschata (Rifu)	cmomeB091
MELO3C013388	Cucurbita moschata (Rifu)	cmomeB453
MELO3C013388	Cucurbita moschata (Rifu)	cmomeB503
MELO3C013388	Cucurbita moschata (Rifu)	cmomeB552
MELO3C013388	Wild cucumber (PI 183967)	cpimeB102
MELO3C013388	Wild cucumber (PI 183967)	cpimeB539
MELO3C013388	Cucumber (Chinese Long) v2	cumeB531
MELO3C013388	Watermelon (Charleston Gray)	mewcgB190
MELO3C013388	Watermelon (Charleston Gray)	mewcgB196
MELO3C013388	Watermelon (97103) v1	mewmB239
MELO3C013388	Watermelon (97103) v1	mewmB252
MELO3C013388	Cucurbita pepo (Zucchini)	cpemeB224
MELO3C013388	Cucurbita pepo (Zucchini)	cpemeB272
MELO3C013388	Cucurbita pepo (Zucchini)	cpemeB610
MELO3C013388	Cucurbita pepo (Zucchini)	cpemeB684
MELO3C013388	Bottle gourd (USVL1VR-Ls)	lsimeB064
MELO3C013388	Bottle gourd (USVL1VR-Ls)	lsimeB096
MELO3C013388	Cucumber (Gy14) v2	cgybmeB088
MELO3C013388	Cucumber (Gy14) v2	cgybmeB092
MELO3C013388	Cucumber (Gy14) v2	cgybmeB469
MELO3C013388	Silver-seed gourd	carmeB0321
MELO3C013388	Silver-seed gourd	carmeB0952
MELO3C013388	Silver-seed gourd	carmeB0988
MELO3C013388	Cucumber (Chinese Long) v3	cucmeB106
MELO3C013388	Cucumber (Chinese Long) v3	cucmeB549
MELO3C013388	Watermelon (97103) v2	mewmbB176
MELO3C013388	Watermelon (97103) v2	mewmbB179
MELO3C013388	Wax gourd	mewgoB213
MELO3C013388	Wax gourd	mewgoB231
MELO3C013388	Melon (DHL92) v3.5.1	memeB038