MELO3C013380T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013380T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA replication and repair protein RecF
Location	chr1 : 16271810 .. 16272199 (-)
Sequence length	390

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCCTCAATACAATCAGCTACGATTCTCCAAAAAATTTTCCTATCAAGGTTTACAACACTAATATGAAGAATCATTACAAAAGGCCATCACCACCAGATCTAGGATGGGATGACTTACGCCTAGATTTTCGATCATTTGATGGAAATAATATTGAAACTTGGAACATTGATGGATGTTCTGAAGGGCAGATGATGATCATCTTTCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCATAGAGAGATTGTTGACGCCTTAACTGCAGGGTTTACAGGAAACCTCAGAAATTGGTGGCACAATCGTCTTACTGATGCAAATAGAGAAGCCTTAAAGAACGTTGTTTTGGAAAAATACAAAACAAGAACCTAA

mRNA sequence

ATGGGAAGCCTCAATACAATCAGCTACGATTCTCCAAAAAATTTTCCTATCAAGGTTTACAACACTAATATGAAGAATCATTACAAAAGGCCATCACCACCAGATCTAGGATGGGATGACTTACGCCTAGATTTTCGATCATTTGATGGAAATAATATTGAAACTTGGAACATTGATGGATGTTCTGAAGGGCAGATGATGATCATCTTTCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCATAGAGAGATTGTTGACGCCTTAACTGCAGGGTTTACAGGAAACCTCAGAAATTGGTGGCACAATCGTCTTACTGATGCAAATAGAGAAGCCTTAAAGAACGTTGTTTTGGAAAAATACAAAACAAGAACCTAA

Coding sequence (CDS)

ATGGGAAGCCTCAATACAATCAGCTACGATTCTCCAAAAAATTTTCCTATCAAGGTTTACAACACTAATATGAAGAATCATTACAAAAGGCCATCACCACCAGATCTAGGATGGGATGACTTACGCCTAGATTTTCGATCATTTGATGGAAATAATATTGAAACTTGGAACATTGATGGATGTTCTGAAGGGCAGATGATGATCATCTTTCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCATAGAGAGATTGTTGACGCCTTAACTGCAGGGTTTACAGGAAACCTCAGAAATTGGTGGCACAATCGTCTTACTGATGCAAATAGAGAAGCCTTAAAGAACGTTGTTTTGGAAAAATACAAAACAAGAACCTAA

Protein sequence

MGSLNTISYDSPKNFPIKVYNTNMKNHYKRPSPPDLGWDDLRLDFRSFDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVVLEKYKTRT*

Homology

[Close]

BLAST of MELO3C013380T1 vs. TrEMBL
Match: A0A151U814_CAJCA (Polyprotein OS=Cajanus cajan GN=KK1_008190 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1


Query: 25  KNHYKRPSPPDLGWDDLRLDFRS-FDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRR 84
           +N+Y+RP+ PD+ +++  L+  S F+G  I+ WNIDG +E Q++    EM +AAT+Y  +
Sbjct: 140 RNYYRRPTIPDIQFEEWNLESPSAFNGEGIQEWNIDGMTEHQILRKTHEMTMAATAYRAK 199

Query: 85  MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVVLEKYKT 128
            S ++ V  L AGFTG+L+ WW N LT   +  + NVV  + +T
Sbjct: 200 HSEQQTVKLLIAGFTGSLKGWWDNYLTSEQKNYIINVVKAEDQT 243

[Close]

BLAST of MELO3C013380T1 vs. TrEMBL
Match: A0A0R0EG98_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G037700 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1


Query: 18  KVYNTNMKNHYKRPSPPDLGWDDLRLD-FRSFDGNNIETWNIDGCSEGQMMIIFQEMFVA 77
           K + T  K +Y+RP+ PDL  ++   D F+SF  NNI  WNID   E  +M   Q M + 
Sbjct: 162 KHWKTPSKLYYQRPTAPDLLLEERGEDNFKSFSANNIYKWNIDAQMEYNIMNTLQHMTMV 221

Query: 78  ATSYLRRMSHR----EIVDALTAGFTGNLRNWWHNRLTDANREALKNVV 122
           AT+Y  +MSH      I+D L AGF+G L+ WW N LT+  +  + NVV
Sbjct: 222 ATTY--QMSHECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYNVV 268

[Close]

BLAST of MELO3C013380T1 vs. TrEMBL
Match: A0A151RZ33_CAJCA (Enzymatic polyprotein OS=Cajanus cajan GN=KK1_030505 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-12
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 25  KNHYKRPSPPDLGWDDLRLDFRS-FDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRR 84
           +N+Y+RP+ PD+ +++  L+  S F+G  I  WNIDG +E Q++    EM +AA++Y  +
Sbjct: 5   RNYYRRPTLPDIQFEEWNLESPSAFNGEGITEWNIDGLTEHQILRKTHEMSMAASAYRAK 64

Query: 85  MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVV 122
            S  + V  L A FTG+L+ WW N LT   R  + N+V
Sbjct: 65  HSEAQTVKLLIARFTGSLKGWWDNYLTQEQRNYILNIV 102

[Close]

BLAST of MELO3C013380T1 vs. TrEMBL
Match: A0A151TFW5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_012162 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 3   SLNTISYDSPKNFPIKVYNTNMKNHYKRPSPPDLGWDDL-RLDFRSFDGNNIETWNIDGC 62
           S+NTI  D      IK +      +Y R SP D+ +++   +   S+ G++I  WNIDG 
Sbjct: 269 SINTIDTDDFSINKIKTHYPKTTTYYPRSSPADVLYEERGEVVQNSYSGSDICEWNIDGM 328

Query: 63  SEGQMMIIFQEMFVAATSYLRR-MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNV 122
           SE  ++    +M +AA++Y RR  S +     L  GFTG L+ WW    T A+REA+ NV
Sbjct: 329 SEQNILDFICQMSMAASAYKRRGNSDKATAMTLVQGFTGQLKGWWDKFWTQADREAILNV 388

Query: 123 VLEKYKTR 129
           V  K++TR
Sbjct: 389 V--KHETR 394

[Close]

BLAST of MELO3C013380T1 vs. TrEMBL
Match: K7MLZ7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G162900 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 6   TISYDSPKNFPI-----KVYNTNMKNHYKRPSPPDLGWDDL-RLDFRSFDGNNIETWNID 65
           +I   SPK  PI     K + T  K +Y+RP+ PDL  ++    +F+SF  NNI  WNID
Sbjct: 314 SIEETSPK-IPIEKPLFKPFKTPSKLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNID 373

Query: 66  GCSEGQMMIIFQEMFVAATSYL--RRMSHREIVDALTAGFTGNLRNWWHNRLTDANREAL 122
             +E  +M   Q M + AT+Y      S   I+D L AGF+G L+ WW N LT+  +  +
Sbjct: 374 AQTEYNIMNTLQHMTMVATAYQTSHECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKI 433

[Close]

BLAST of MELO3C013380T1 vs. NCBI nr
Match: gi|659128065|ref|XP_008464028.1| (PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 23  NMKNHYKRPSPPDLGWDDLRLDFRSFDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLR 82
           +MKNHY +PSPPDLGWDDL  + R++DG ++ TWNIDG SE QMM  FQEM +AAT+Y  
Sbjct: 33  DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATTYST 92

Query: 83  RMSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVVLEKYKT 128
           + S  E    L  GF GNLR+WWHN L + +R+ +        KT
Sbjct: 93  KKSTYETAQILILGFNGNLRSWWHNLLMEQDRQRILTATRTVVKT 137

[Close]

BLAST of MELO3C013380T1 vs. NCBI nr
Match: gi|1012364272|gb|KYP75455.1| (polyprotein [Cajanus cajan])

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1


Query: 25  KNHYKRPSPPDLGWDDLRLDFRS-FDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRR 84
           +N+Y+RP+ PD+ +++  L+  S F+G  I+ WNIDG +E Q++    EM +AAT+Y  +
Sbjct: 140 RNYYRRPTIPDIQFEEWNLESPSAFNGEGIQEWNIDGMTEHQILRKTHEMTMAATAYRAK 199

Query: 85  MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVVLEKYKT 128
            S ++ V  L AGFTG+L+ WW N LT   +  + NVV  + +T
Sbjct: 200 HSEQQTVKLLIAGFTGSLKGWWDNYLTSEQKNYIINVVKAEDQT 243

[Close]

BLAST of MELO3C013380T1 vs. NCBI nr
Match: gi|947039931|gb|KRG89655.1| (hypothetical protein GLYMA_20G037700 [Glycine max])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1


Query: 18  KVYNTNMKNHYKRPSPPDLGWDDLRLD-FRSFDGNNIETWNIDGCSEGQMMIIFQEMFVA 77
           K + T  K +Y+RP+ PDL  ++   D F+SF  NNI  WNID   E  +M   Q M + 
Sbjct: 162 KHWKTPSKLYYQRPTAPDLLLEERGEDNFKSFSANNIYKWNIDAQMEYNIMNTLQHMTMV 221

Query: 78  ATSYLRRMSHR----EIVDALTAGFTGNLRNWWHNRLTDANREALKNVV 122
           AT+Y  +MSH      I+D L AGF+G L+ WW N LT+  +  + NVV
Sbjct: 222 ATTY--QMSHECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYNVV 268

[Close]

BLAST of MELO3C013380T1 vs. NCBI nr
Match: gi|1012336511|gb|KYP47809.1| (Enzymatic polyprotein [Cajanus cajan])

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 25  KNHYKRPSPPDLGWDDLRLDFRS-FDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRR 84
           +N+Y+RP+ PD+ +++  L+  S F+G  I  WNIDG +E Q++    EM +AA++Y  +
Sbjct: 5   RNYYRRPTLPDIQFEEWNLESPSAFNGEGITEWNIDGLTEHQILRKTHEMSMAASAYRAK 64

Query: 85  MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVV 122
            S  + V  L A FTG+L+ WW N LT   R  + N+V
Sbjct: 65  HSEAQTVKLLIARFTGSLKGWWDNYLTQEQRNYILNIV 102

[Close]

BLAST of MELO3C013380T1 vs. NCBI nr
Match: gi|947055007|gb|KRH04460.1| (hypothetical protein GLYMA_17G162900 [Glycine max])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 6   TISYDSPKNFPI-----KVYNTNMKNHYKRPSPPDLGWDDL-RLDFRSFDGNNIETWNID 65
           +I   SPK  PI     K + T  K +Y+RP+ PDL  ++    +F+SF  NNI  WNID
Sbjct: 314 SIEETSPK-IPIEKPLFKPFKTPSKLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNID 373

Query: 66  GCSEGQMMIIFQEMFVAATSYL--RRMSHREIVDALTAGFTGNLRNWWHNRLTDANREAL 122
             +E  +M   Q M + AT+Y      S   I+D L AGF+G L+ WW N LT+  +  +
Sbjct: 374 AQTEYNIMNTLQHMTMVATAYQTSHECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKI 433

The following BLAST results are available for this feature:

BLAST of MELO3C013380T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151U814_CAJCA	3.1e-14	40.38	Polyprotein OS=Cajanus cajan GN=KK1_008190 PE=4 SV=1	[more]
A0A0R0EG98_SOYBN	9.8e-13	42.20	Uncharacterized protein OS=Glycine max GN=GLYMA_20G037700 PE=4 SV=1	[more]
A0A151RZ33_CAJCA	1.7e-12	39.80	Enzymatic polyprotein OS=Cajanus cajan GN=KK1_030505 PE=4 SV=1	[more]
A0A151TFW5_CAJCA	1.1e-11	37.50	Uncharacterized protein OS=Cajanus cajan GN=KK1_012162 PE=4 SV=1	[more]
K7MLZ7_SOYBN	1.1e-11	37.90	Uncharacterized protein OS=Glycine max GN=GLYMA_17G162900 PE=4 SV=1	[more]

BLAST of MELO3C013380T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128065\|ref\|XP_008464028.1\|	1.6e-24	52.38	PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo]	[more]
gi\|1012364272\|gb\|KYP75455.1\|	4.4e-14	40.38	polyprotein [Cajanus cajan]	[more]
gi\|947039931\|gb\|KRG89655.1\|	1.4e-12	42.20	hypothetical protein GLYMA_20G037700 [Glycine max]	[more]
gi\|1012336511\|gb\|KYP47809.1\|	2.4e-12	39.80	Enzymatic polyprotein [Cajanus cajan]	[more]
gi\|947055007\|gb\|KRH04460.1\|	1.6e-11	37.90	hypothetical protein GLYMA_17G162900 [Glycine max]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013380	MELO3C013380	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C013380T1	MELO3C013380T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013380T1.cds1	MELO3C013380T1.cds1	CDS