MELO3C013380 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013380
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA replication and repair protein RecF
Location	chr1 : 16271810 .. 16272199 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCCTCAATACAATCAGCTACGATTCTCCAAAAAATTTTCCTATCAAGGTTTACAACACTAATATGAAGAATCATTACAAAAGGCCATCACCACCAGATCTAGGATGGGATGACTTACGCCTAGATTTTCGATCATTTGATGGAAATAATATTGAAACTTGGAACATTGATGGATGTTCTGAAGGGCAGATGATGATCATCTTTCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCATAGAGAGATTGTTGACGCCTTAACTGCAGGGTTTACAGGAAACCTCAGAAATTGGTGGCACAATCGTCTTACTGATGCAAATAGAGAAGCCTTAAAGAACGTTGTTTTGGAAAAATACAAAACAAGAACCTAA

mRNA sequence

ATGGGAAGCCTCAATACAATCAGCTACGATTCTCCAAAAAATTTTCCTATCAAGGTTTACAACACTAATATGAAGAATCATTACAAAAGGCCATCACCACCAGATCTAGGATGGGATGACTTACGCCTAGATTTTCGATCATTTGATGGAAATAATATTGAAACTTGGAACATTGATGGATGTTCTGAAGGGCAGATGATGATCATCTTTCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCATAGAGAGATTGTTGACGCCTTAACTGCAGGGTTTACAGGAAACCTCAGAAATTGGTGGCACAATCGTCTTACTGATGCAAATAGAGAAGCCTTAAAGAACGTTGTTTTGGAAAAATACAAAACAAGAACCTAA

Coding sequence (CDS)

ATGGGAAGCCTCAATACAATCAGCTACGATTCTCCAAAAAATTTTCCTATCAAGGTTTACAACACTAATATGAAGAATCATTACAAAAGGCCATCACCACCAGATCTAGGATGGGATGACTTACGCCTAGATTTTCGATCATTTGATGGAAATAATATTGAAACTTGGAACATTGATGGATGTTCTGAAGGGCAGATGATGATCATCTTTCAAGAAATGTTTGTTGCTGCAACAAGCTATCTTAGAAGAATGAGTCATAGAGAGATTGTTGACGCCTTAACTGCAGGGTTTACAGGAAACCTCAGAAATTGGTGGCACAATCGTCTTACTGATGCAAATAGAGAAGCCTTAAAGAACGTTGTTTTGGAAAAATACAAAACAAGAACCTAA

Protein sequence

MGSLNTISYDSPKNFPIKVYNTNMKNHYKRPSPPDLGWDDLRLDFRSFDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRRMSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVVLEKYKTRT*

Homology

[Close]

BLAST of MELO3C013380 vs. TrEMBL
Match: A0A151U814_CAJCA (Polyprotein OS=Cajanus cajan GN=KK1_008190 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.1e-14
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1


Query: 25  KNHYKRPSPPDLGWDDLRLDFRS-FDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRR 84
           +N+Y+RP+ PD+ +++  L+  S F+G  I+ WNIDG +E Q++    EM +AAT+Y  +
Sbjct: 140 RNYYRRPTIPDIQFEEWNLESPSAFNGEGIQEWNIDGMTEHQILRKTHEMTMAATAYRAK 199

Query: 85  MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVVLEKYKT 128
            S ++ V  L AGFTG+L+ WW N LT   +  + NVV  + +T
Sbjct: 200 HSEQQTVKLLIAGFTGSLKGWWDNYLTSEQKNYIINVVKAEDQT 243

[Close]

BLAST of MELO3C013380 vs. TrEMBL
Match: A0A0R0EG98_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G037700 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1


Query: 18  KVYNTNMKNHYKRPSPPDLGWDDLRLD-FRSFDGNNIETWNIDGCSEGQMMIIFQEMFVA 77
           K + T  K +Y+RP+ PDL  ++   D F+SF  NNI  WNID   E  +M   Q M + 
Sbjct: 162 KHWKTPSKLYYQRPTAPDLLLEERGEDNFKSFSANNIYKWNIDAQMEYNIMNTLQHMTMV 221

Query: 78  ATSYLRRMSHR----EIVDALTAGFTGNLRNWWHNRLTDANREALKNVV 122
           AT+Y  +MSH      I+D L AGF+G L+ WW N LT+  +  + NVV
Sbjct: 222 ATTY--QMSHECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYNVV 268

[Close]

BLAST of MELO3C013380 vs. TrEMBL
Match: A0A151RZ33_CAJCA (Enzymatic polyprotein OS=Cajanus cajan GN=KK1_030505 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-12
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 25  KNHYKRPSPPDLGWDDLRLDFRS-FDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRR 84
           +N+Y+RP+ PD+ +++  L+  S F+G  I  WNIDG +E Q++    EM +AA++Y  +
Sbjct: 5   RNYYRRPTLPDIQFEEWNLESPSAFNGEGITEWNIDGLTEHQILRKTHEMSMAASAYRAK 64

Query: 85  MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVV 122
            S  + V  L A FTG+L+ WW N LT   R  + N+V
Sbjct: 65  HSEAQTVKLLIARFTGSLKGWWDNYLTQEQRNYILNIV 102

[Close]

BLAST of MELO3C013380 vs. TrEMBL
Match: A0A151TFW5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_012162 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 1


Query: 3   SLNTISYDSPKNFPIKVYNTNMKNHYKRPSPPDLGWDDL-RLDFRSFDGNNIETWNIDGC 62
           S+NTI  D      IK +      +Y R SP D+ +++   +   S+ G++I  WNIDG 
Sbjct: 269 SINTIDTDDFSINKIKTHYPKTTTYYPRSSPADVLYEERGEVVQNSYSGSDICEWNIDGM 328

Query: 63  SEGQMMIIFQEMFVAATSYLRR-MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNV 122
           SE  ++    +M +AA++Y RR  S +     L  GFTG L+ WW    T A+REA+ NV
Sbjct: 329 SEQNILDFICQMSMAASAYKRRGNSDKATAMTLVQGFTGQLKGWWDKFWTQADREAILNV 388

Query: 123 VLEKYKTR 129
           V  K++TR
Sbjct: 389 V--KHETR 394

[Close]

BLAST of MELO3C013380 vs. TrEMBL
Match: K7MLZ7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G162900 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 6   TISYDSPKNFPI-----KVYNTNMKNHYKRPSPPDLGWDDL-RLDFRSFDGNNIETWNID 65
           +I   SPK  PI     K + T  K +Y+RP+ PDL  ++    +F+SF  NNI  WNID
Sbjct: 314 SIEETSPK-IPIEKPLFKPFKTPSKLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNID 373

Query: 66  GCSEGQMMIIFQEMFVAATSYL--RRMSHREIVDALTAGFTGNLRNWWHNRLTDANREAL 122
             +E  +M   Q M + AT+Y      S   I+D L AGF+G L+ WW N LT+  +  +
Sbjct: 374 AQTEYNIMNTLQHMTMVATAYQTSHECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKI 433

[Close]

BLAST of MELO3C013380 vs. NCBI nr
Match: gi|659128065|ref|XP_008464028.1| (PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 55/105 (52.38%), Postives = 70/105 (66.67%), Query Frame = 1


Query: 23  NMKNHYKRPSPPDLGWDDLRLDFRSFDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLR 82
           +MKNHY +PSPPDLGWDDL  + R++DG ++ TWNIDG SE QMM  FQEM +AAT+Y  
Sbjct: 33  DMKNHYPQPSPPDLGWDDLHHEKRTYDGQSLITWNIDGYSEAQMMNTFQEMLLAATTYST 92

Query: 83  RMSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVVLEKYKT 128
           + S  E    L  GF GNLR+WWHN L + +R+ +        KT
Sbjct: 93  KKSTYETAQILILGFNGNLRSWWHNLLMEQDRQRILTATRTVVKT 137

[Close]

BLAST of MELO3C013380 vs. NCBI nr
Match: gi|1012364272|gb|KYP75455.1| (polyprotein [Cajanus cajan])

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 42/104 (40.38%), Postives = 67/104 (64.42%), Query Frame = 1


Query: 25  KNHYKRPSPPDLGWDDLRLDFRS-FDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRR 84
           +N+Y+RP+ PD+ +++  L+  S F+G  I+ WNIDG +E Q++    EM +AAT+Y  +
Sbjct: 140 RNYYRRPTIPDIQFEEWNLESPSAFNGEGIQEWNIDGMTEHQILRKTHEMTMAATAYRAK 199

Query: 85  MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVVLEKYKT 128
            S ++ V  L AGFTG+L+ WW N LT   +  + NVV  + +T
Sbjct: 200 HSEQQTVKLLIAGFTGSLKGWWDNYLTSEQKNYIINVVKAEDQT 243

[Close]

BLAST of MELO3C013380 vs. NCBI nr
Match: gi|947039931|gb|KRG89655.1| (hypothetical protein GLYMA_20G037700 [Glycine max])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1


Query: 18  KVYNTNMKNHYKRPSPPDLGWDDLRLD-FRSFDGNNIETWNIDGCSEGQMMIIFQEMFVA 77
           K + T  K +Y+RP+ PDL  ++   D F+SF  NNI  WNID   E  +M   Q M + 
Sbjct: 162 KHWKTPSKLYYQRPTAPDLLLEERGEDNFKSFSANNIYKWNIDAQMEYNIMNTLQHMTMV 221

Query: 78  ATSYLRRMSHR----EIVDALTAGFTGNLRNWWHNRLTDANREALKNVV 122
           AT+Y  +MSH      I+D L AGF+G L+ WW N LT+  +  + NVV
Sbjct: 222 ATTY--QMSHECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKIYNVV 268

[Close]

BLAST of MELO3C013380 vs. NCBI nr
Match: gi|1012336511|gb|KYP47809.1| (Enzymatic polyprotein [Cajanus cajan])

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 25  KNHYKRPSPPDLGWDDLRLDFRS-FDGNNIETWNIDGCSEGQMMIIFQEMFVAATSYLRR 84
           +N+Y+RP+ PD+ +++  L+  S F+G  I  WNIDG +E Q++    EM +AA++Y  +
Sbjct: 5   RNYYRRPTLPDIQFEEWNLESPSAFNGEGITEWNIDGLTEHQILRKTHEMSMAASAYRAK 64

Query: 85  MSHREIVDALTAGFTGNLRNWWHNRLTDANREALKNVV 122
            S  + V  L A FTG+L+ WW N LT   R  + N+V
Sbjct: 65  HSEAQTVKLLIARFTGSLKGWWDNYLTQEQRNYILNIV 102

[Close]

BLAST of MELO3C013380 vs. NCBI nr
Match: gi|947055007|gb|KRH04460.1| (hypothetical protein GLYMA_17G162900 [Glycine max])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 6   TISYDSPKNFPI-----KVYNTNMKNHYKRPSPPDLGWDDL-RLDFRSFDGNNIETWNID 65
           +I   SPK  PI     K + T  K +Y+RP+ PDL  ++    +F+SF  NNI  WNID
Sbjct: 314 SIEETSPK-IPIEKPLFKPFKTPSKLYYQRPTAPDLLLEERGENNFKSFSANNIYEWNID 373

Query: 66  GCSEGQMMIIFQEMFVAATSYL--RRMSHREIVDALTAGFTGNLRNWWHNRLTDANREAL 122
             +E  +M   Q M + AT+Y      S   I+D L AGF+G L+ WW N LT+  +  +
Sbjct: 374 AQTEYNIMNTLQHMTMVATAYQTSHECSEETIIDILVAGFSGQLKGWWDNYLTNEEKSKI 433

The following BLAST results are available for this feature:

BLAST of MELO3C013380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151U814_CAJCA	3.1e-14	40.38	Polyprotein OS=Cajanus cajan GN=KK1_008190 PE=4 SV=1	[more]
A0A0R0EG98_SOYBN	9.8e-13	42.20	Uncharacterized protein OS=Glycine max GN=GLYMA_20G037700 PE=4 SV=1	[more]
A0A151RZ33_CAJCA	1.7e-12	39.80	Enzymatic polyprotein OS=Cajanus cajan GN=KK1_030505 PE=4 SV=1	[more]
A0A151TFW5_CAJCA	1.1e-11	37.50	Uncharacterized protein OS=Cajanus cajan GN=KK1_012162 PE=4 SV=1	[more]
K7MLZ7_SOYBN	1.1e-11	37.90	Uncharacterized protein OS=Glycine max GN=GLYMA_17G162900 PE=4 SV=1	[more]

BLAST of MELO3C013380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128065\|ref\|XP_008464028.1\|	1.6e-24	52.38	PREDICTED: uncharacterized protein LOC103502012 [Cucumis melo]	[more]
gi\|1012364272\|gb\|KYP75455.1\|	4.4e-14	40.38	polyprotein [Cajanus cajan]	[more]
gi\|947039931\|gb\|KRG89655.1\|	1.4e-12	42.20	hypothetical protein GLYMA_20G037700 [Glycine max]	[more]
gi\|1012336511\|gb\|KYP47809.1\|	2.4e-12	39.80	Enzymatic polyprotein [Cajanus cajan]	[more]
gi\|947055007\|gb\|KRH04460.1\|	1.6e-11	37.90	hypothetical protein GLYMA_17G162900 [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013380T1	MELO3C013380T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013380	Cucumber (Gy14) v1	cgymeB302
MELO3C013380	Cucumber (Gy14) v1	cgymeB622
MELO3C013380	Cucurbita maxima (Rimu)	cmameB092
MELO3C013380	Cucurbita maxima (Rimu)	cmameB462
MELO3C013380	Cucurbita maxima (Rimu)	cmameB510
MELO3C013380	Cucurbita maxima (Rimu)	cmameB563
MELO3C013380	Cucurbita moschata (Rifu)	cmomeB091
MELO3C013380	Cucurbita moschata (Rifu)	cmomeB453
MELO3C013380	Cucurbita moschata (Rifu)	cmomeB503
MELO3C013380	Cucurbita moschata (Rifu)	cmomeB552
MELO3C013380	Wild cucumber (PI 183967)	cpimeB102
MELO3C013380	Wild cucumber (PI 183967)	cpimeB539
MELO3C013380	Cucumber (Chinese Long) v2	cumeB531
MELO3C013380	Watermelon (Charleston Gray)	mewcgB196
MELO3C013380	Watermelon (97103) v1	mewmB239
MELO3C013380	Cucurbita pepo (Zucchini)	cpemeB224
MELO3C013380	Cucurbita pepo (Zucchini)	cpemeB272
MELO3C013380	Cucurbita pepo (Zucchini)	cpemeB610
MELO3C013380	Cucurbita pepo (Zucchini)	cpemeB684
MELO3C013380	Bottle gourd (USVL1VR-Ls)	lsimeB064
MELO3C013380	Bottle gourd (USVL1VR-Ls)	lsimeB096
MELO3C013380	Cucumber (Gy14) v2	cgybmeB088
MELO3C013380	Cucumber (Gy14) v2	cgybmeB092
MELO3C013380	Cucumber (Gy14) v2	cgybmeB469
MELO3C013380	Silver-seed gourd	carmeB0321
MELO3C013380	Silver-seed gourd	carmeB0952
MELO3C013380	Silver-seed gourd	carmeB0988
MELO3C013380	Cucumber (Chinese Long) v3	cucmeB106
MELO3C013380	Cucumber (Chinese Long) v3	cucmeB549
MELO3C013380	Watermelon (97103) v2	mewmbB179
MELO3C013380	Wax gourd	mewgoB213
MELO3C013380	Wax gourd	mewgoB231
MELO3C013380	Melon (DHL92) v3.5.1	memeB038