MELO3C013071.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013071.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	transcription factor MYB26
Location	chr04 : 17105865 .. 17106290 (-)
Sequence length	426

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCCATCATCAGGAGGTTACCGTCACCAACCGCTCAACTCCGATCAACCAGTGGTGGCAATTGGAGAGTTCGTCACTCCAACAGCTACATTACCACAATACGTCGACATTTCATTTTTGCATCCCACGACAACGATGCCGAAATTATGCGAGGTTGGCGAGGAAAATCTTTGTTCATCAATTCCACAAGTTCCAGCACCTTTGCAAGATCTTGATCCAATTACCAAATTATCAAGCTTTTCAAACGGTTACTATCCACAAGATCAATGCATGGTAACTAATCAAATGGCTATGGAGCAAATTGATATGATCATGTCATCGATCTTACAAAACCCGCCGTGTTCATCGTTGTCATCGTCGTCGTCGTCATTGGGATTATCAGGATTATCCAGCGACCTTGTTTCATCGAGCTGGGGTGCATAG

mRNA sequence

ATGTGGCCATCATCAGGAGGTTACCGTCACCAACCGCTCAACTCCGATCAACCAGTGGTGGCAATTGGAGAGTTCGTCACTCCAACAGCTACATTACCACAATACGTCGACATTTCATTTTTGCATCCCACGACAACGATGCCGAAATTATGCGAGGTTGGCGAGGAAAATCTTTGTTCATCAATTCCACAAGTTCCAGCACCTTTGCAAGATCTTGATCCAATTACCAAATTATCAAGCTTTTCAAACGGTTACTATCCACAAGATCAATGCATGGTAACTAATCAAATGGCTATGGAGCAAATTGATATGATCATGTCATCGATCTTACAAAACCCGCCGTGTTCATCGTTGTCATCGTCGTCGTCGTCATTGGGATTATCAGGATTATCCAGCGACCTTGTTTCATCGAGCTGGGGTGCATAG

Coding sequence (CDS)

ATGTGGCCATCATCAGGAGGTTACCGTCACCAACCGCTCAACTCCGATCAACCAGTGGTGGCAATTGGAGAGTTCGTCACTCCAACAGCTACATTACCACAATACGTCGACATTTCATTTTTGCATCCCACGACAACGATGCCGAAATTATGCGAGGTTGGCGAGGAAAATCTTTGTTCATCAATTCCACAAGTTCCAGCACCTTTGCAAGATCTTGATCCAATTACCAAATTATCAAGCTTTTCAAACGGTTACTATCCACAAGATCAATGCATGGTAACTAATCAAATGGCTATGGAGCAAATTGATATGATCATGTCATCGATCTTACAAAACCCGCCGTGTTCATCGTTGTCATCGTCGTCGTCGTCATTGGGATTATCAGGATTATCCAGCGACCTTGTTTCATCGAGCTGGGGTGCATAG

Protein sequence

MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISFLHPTTTMPKLCEVGEENLCSSIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSSSSSSLGLSGLSSDLVSSSWGA

Homology

[Close]

BLAST of MELO3C013071.2.1 vs. NCBI nr
Match: XP_008447615.1 (PREDICTED: transcription factor MYB26 [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 1.8e-62
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 60
           MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS
Sbjct: 215 MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 274

Query: 61  SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 120
           SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS
Sbjct: 275 SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 334

Query: 121 SSSSLGLSGLSSDLVSSSWGA 142
           SSSSLGLSGLSSDLVSSSWGA
Sbjct: 335 SSSSLGLSGLSSDLVSSSWGA 355

[Close]

BLAST of MELO3C013071.2.1 vs. NCBI nr
Match: XP_004141218.1 (PREDICTED: transcription factor MYB86 [Cucumis sativus] >KGN59797.1 hypothetical protein Csa_3G847340 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 8.8e-57
Identity = 118/141 (83.69%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 60
           MWPSSGGYR QPL+SDQPVVA GEFVTP ATLPQYVDIS             VGEEN+CS
Sbjct: 215 MWPSSGGYRLQPLDSDQPVVASGEFVTPAATLPQYVDISFLHPTTTMPKLCEVGEENICS 274

Query: 61  SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 120
           SIPQ+PAPLQDLDPI KLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS
Sbjct: 275 SIPQIPAPLQDLDPIIKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 334

Query: 121 SSSSLGLSGLSSDLVSSSWGA 142
           SSSSLGL+GLS+DLVSSSW A
Sbjct: 335 SSSSLGLTGLSNDLVSSSWDA 355

[Close]

BLAST of MELO3C013071.2.1 vs. NCBI nr
Match: XP_022955350.1 (transcription factor MYB26-like [Cucurbita moschata])

HSP 1 Score: 174.1 bits (440), Expect = 3.4e-40
Identity = 98/139 (70.50%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 2   WPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCSS 61
           W S GGYR Q L+SDQ +VA GEFVTP  TLPQYVD S             VGEENLCSS
Sbjct: 214 WQSLGGYRPQSLDSDQLMVASGEFVTPATTLPQYVDGS----IFHPVKLCEVGEENLCSS 273

Query: 62  IPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSSS 121
            PQ+ APLQDLDP TKLSSF NGYYPQDQC+  NQM MEQIDMIMSSILQ P C   SSS
Sbjct: 274 TPQISAPLQDLDPFTKLSSFPNGYYPQDQCLAANQMVMEQIDMIMSSILQIPSC---SSS 333

Query: 122 SSSLGLSGLSSDLVSSSWG 141
           SS LGLS LSS+LVSSSWG
Sbjct: 334 SSLLGLSELSSNLVSSSWG 345

[Close]

BLAST of MELO3C013071.2.1 vs. NCBI nr
Match: XP_023526888.1 (transcription factor MYB26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 3.4e-40
Identity = 97/139 (69.78%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 2   WPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCSS 61
           W S GGYR Q L+SDQ +VA GEFVTP  TLPQYVD S             VGEEN+CSS
Sbjct: 197 WQSLGGYRSQSLDSDQLMVASGEFVTPMTTLPQYVDGS----ILHPAKLCEVGEENICSS 256

Query: 62  IPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSSS 121
           +PQ+ AP QDLDP TKLSSF NGYYPQDQC+  NQMAMEQIDMIMSSILQ P C   SSS
Sbjct: 257 VPQISAPSQDLDPFTKLSSFPNGYYPQDQCLAANQMAMEQIDMIMSSILQIPSC---SSS 316

Query: 122 SSSLGLSGLSSDLVSSSWG 141
           SS LGLS LSS+LVSSSWG
Sbjct: 317 SSLLGLSELSSNLVSSSWG 328

[Close]

BLAST of MELO3C013071.2.1 vs. NCBI nr
Match: XP_023526354.1 (transcription factor MYB26-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526356.1 transcription factor MYB26-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 7.5e-40
Identity = 96/139 (69.06%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 2   WPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCSS 61
           W S GGYR Q L+SDQ +VA GEFVTP  TLPQYVD S             VGEEN+CSS
Sbjct: 214 WQSLGGYRSQSLDSDQLMVASGEFVTPMTTLPQYVDGS----ILHPAKLCEVGEENICSS 273

Query: 62  IPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSSS 121
           +PQ+ AP QDLDP TKLSSF NGYYPQDQC+  NQMAMEQIDMIMSSILQ P C   SSS
Sbjct: 274 VPQISAPSQDLDPFTKLSSFPNGYYPQDQCLAANQMAMEQIDMIMSSILQIPSC---SSS 333

Query: 122 SSSLGLSGLSSDLVSSSWG 141
           S+ LGLS LSS+LVSSSWG
Sbjct: 334 SALLGLSELSSNLVSSSWG 345

[Close]

BLAST of MELO3C013071.2.1 vs. TrEMBL
Match: tr|A0A1S3BHU9|A0A1S3BHU9_CUCME (transcription factor MYB26 OS=Cucumis melo OX=3656 GN=LOC103490029 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-62
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 60
           MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS
Sbjct: 215 MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 274

Query: 61  SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 120
           SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS
Sbjct: 275 SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 334

Query: 121 SSSSLGLSGLSSDLVSSSWGA 142
           SSSSLGLSGLSSDLVSSSWGA
Sbjct: 335 SSSSLGLSGLSSDLVSSSWGA 355

[Close]

BLAST of MELO3C013071.2.1 vs. TrEMBL
Match: tr|A0A0A0LGA8|A0A0A0LGA8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847340 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.8e-57
Identity = 118/141 (83.69%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 60
           MWPSSGGYR QPL+SDQPVVA GEFVTP ATLPQYVDIS             VGEEN+CS
Sbjct: 215 MWPSSGGYRLQPLDSDQPVVASGEFVTPAATLPQYVDISFLHPTTTMPKLCEVGEENICS 274

Query: 61  SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 120
           SIPQ+PAPLQDLDPI KLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS
Sbjct: 275 SIPQIPAPLQDLDPIIKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 334

Query: 121 SSSSLGLSGLSSDLVSSSWGA 142
           SSSSLGL+GLS+DLVSSSW A
Sbjct: 335 SSSSLGLTGLSNDLVSSSWDA 355

The following BLAST results are available for this feature:

BLAST of MELO3C013071.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447615.1	1.8e-62	100.00	PREDICTED: transcription factor MYB26 [Cucumis melo]	[more]
XP_004141218.1	8.8e-57	83.69	PREDICTED: transcription factor MYB86 [Cucumis sativus] >KGN59797.1 hypothetical...	[more]
XP_022955350.1	3.4e-40	70.50	transcription factor MYB26-like [Cucurbita moschata]	[more]
XP_023526888.1	3.4e-40	69.78	transcription factor MYB26-like [Cucurbita pepo subsp. pepo]	[more]
XP_023526354.1	7.5e-40	69.06	transcription factor MYB26-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235...	[more]

BLAST of MELO3C013071.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C013071.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C013071.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHU9\|A0A1S3BHU9_CUCME	1.2e-62	100.00	transcription factor MYB26 OS=Cucumis melo OX=3656 GN=LOC103490029 PE=4 SV=1	[more]
tr\|A0A0A0LGA8\|A0A0A0LGA8_CUCSA	5.8e-57	83.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847340 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013071.2	MELO3C013071.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013071.2.1.exon.1	MELO3C013071.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013071.2.1.CDS.1	MELO3C013071.2.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C013071.2.1	MELO3C013071.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..141