MELO3C013071.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013071.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	transcription factor MYB26
Location	chr04 : 17105865 .. 17106290 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCCATCATCAGGAGGTTACCGTCACCAACCGCTCAACTCCGATCAACCAGTGGTGGCAATTGGAGAGTTCGTCACTCCAACAGCTACATTACCACAATACGTCGACATTTCATTTTTGCATCCCACGACAACGATGCCGAAATTATGCGAGGTTGGCGAGGAAAATCTTTGTTCATCAATTCCACAAGTTCCAGCACCTTTGCAAGATCTTGATCCAATTACCAAATTATCAAGCTTTTCAAACGGTTACTATCCACAAGATCAATGCATGGTAACTAATCAAATGGCTATGGAGCAAATTGATATGATCATGTCATCGATCTTACAAAACCCGCCGTGTTCATCGTTGTCATCGTCGTCGTCGTCATTGGGATTATCAGGATTATCCAGCGACCTTGTTTCATCGAGCTGGGGTGCATAG

mRNA sequence

ATGTGGCCATCATCAGGAGGTTACCGTCACCAACCGCTCAACTCCGATCAACCAGTGGTGGCAATTGGAGAGTTCGTCACTCCAACAGCTACATTACCACAATACGTCGACATTTCATTTTTGCATCCCACGACAACGATGCCGAAATTATGCGAGGTTGGCGAGGAAAATCTTTGTTCATCAATTCCACAAGTTCCAGCACCTTTGCAAGATCTTGATCCAATTACCAAATTATCAAGCTTTTCAAACGGTTACTATCCACAAGATCAATGCATGGTAACTAATCAAATGGCTATGGAGCAAATTGATATGATCATGTCATCGATCTTACAAAACCCGCCGTGTTCATCGTTGTCATCGTCGTCGTCGTCATTGGGATTATCAGGATTATCCAGCGACCTTGTTTCATCGAGCTGGGGTGCATAG

Coding sequence (CDS)

ATGTGGCCATCATCAGGAGGTTACCGTCACCAACCGCTCAACTCCGATCAACCAGTGGTGGCAATTGGAGAGTTCGTCACTCCAACAGCTACATTACCACAATACGTCGACATTTCATTTTTGCATCCCACGACAACGATGCCGAAATTATGCGAGGTTGGCGAGGAAAATCTTTGTTCATCAATTCCACAAGTTCCAGCACCTTTGCAAGATCTTGATCCAATTACCAAATTATCAAGCTTTTCAAACGGTTACTATCCACAAGATCAATGCATGGTAACTAATCAAATGGCTATGGAGCAAATTGATATGATCATGTCATCGATCTTACAAAACCCGCCGTGTTCATCGTTGTCATCGTCGTCGTCGTCATTGGGATTATCAGGATTATCCAGCGACCTTGTTTCATCGAGCTGGGGTGCATAG

Protein sequence

MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISFLHPTTTMPKLCEVGEENLCSSIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSSSSSSLGLSGLSSDLVSSSWGA

Homology

[Close]

BLAST of MELO3C013071.2 vs. NCBI nr
Match: XP_008447615.1 (PREDICTED: transcription factor MYB26 [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 1.8e-62
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 60
           MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS
Sbjct: 215 MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 274

Query: 61  SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 120
           SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS
Sbjct: 275 SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 334

Query: 121 SSSSLGLSGLSSDLVSSSWGA 142
           SSSSLGLSGLSSDLVSSSWGA
Sbjct: 335 SSSSLGLSGLSSDLVSSSWGA 355

[Close]

BLAST of MELO3C013071.2 vs. NCBI nr
Match: XP_004141218.1 (PREDICTED: transcription factor MYB86 [Cucumis sativus] >KGN59797.1 hypothetical protein Csa_3G847340 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 8.8e-57
Identity = 118/141 (83.69%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 60
           MWPSSGGYR QPL+SDQPVVA GEFVTP ATLPQYVDIS             VGEEN+CS
Sbjct: 215 MWPSSGGYRLQPLDSDQPVVASGEFVTPAATLPQYVDISFLHPTTTMPKLCEVGEENICS 274

Query: 61  SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 120
           SIPQ+PAPLQDLDPI KLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS
Sbjct: 275 SIPQIPAPLQDLDPIIKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 334

Query: 121 SSSSLGLSGLSSDLVSSSWGA 142
           SSSSLGL+GLS+DLVSSSW A
Sbjct: 335 SSSSLGLTGLSNDLVSSSWDA 355

[Close]

BLAST of MELO3C013071.2 vs. NCBI nr
Match: XP_022955350.1 (transcription factor MYB26-like [Cucurbita moschata])

HSP 1 Score: 174.1 bits (440), Expect = 3.4e-40
Identity = 98/139 (70.50%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 2   WPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCSS 61
           W S GGYR Q L+SDQ +VA GEFVTP  TLPQYVD S             VGEENLCSS
Sbjct: 214 WQSLGGYRPQSLDSDQLMVASGEFVTPATTLPQYVDGS----IFHPVKLCEVGEENLCSS 273

Query: 62  IPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSSS 121
            PQ+ APLQDLDP TKLSSF NGYYPQDQC+  NQM MEQIDMIMSSILQ P C   SSS
Sbjct: 274 TPQISAPLQDLDPFTKLSSFPNGYYPQDQCLAANQMVMEQIDMIMSSILQIPSC---SSS 333

Query: 122 SSSLGLSGLSSDLVSSSWG 141
           SS LGLS LSS+LVSSSWG
Sbjct: 334 SSLLGLSELSSNLVSSSWG 345

[Close]

BLAST of MELO3C013071.2 vs. NCBI nr
Match: XP_023526888.1 (transcription factor MYB26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 3.4e-40
Identity = 97/139 (69.78%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 2   WPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCSS 61
           W S GGYR Q L+SDQ +VA GEFVTP  TLPQYVD S             VGEEN+CSS
Sbjct: 197 WQSLGGYRSQSLDSDQLMVASGEFVTPMTTLPQYVDGS----ILHPAKLCEVGEENICSS 256

Query: 62  IPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSSS 121
           +PQ+ AP QDLDP TKLSSF NGYYPQDQC+  NQMAMEQIDMIMSSILQ P C   SSS
Sbjct: 257 VPQISAPSQDLDPFTKLSSFPNGYYPQDQCLAANQMAMEQIDMIMSSILQIPSC---SSS 316

Query: 122 SSSLGLSGLSSDLVSSSWG 141
           SS LGLS LSS+LVSSSWG
Sbjct: 317 SSLLGLSELSSNLVSSSWG 328

[Close]

BLAST of MELO3C013071.2 vs. NCBI nr
Match: XP_023526354.1 (transcription factor MYB26-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526356.1 transcription factor MYB26-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 7.5e-40
Identity = 96/139 (69.06%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 2   WPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCSS 61
           W S GGYR Q L+SDQ +VA GEFVTP  TLPQYVD S             VGEEN+CSS
Sbjct: 214 WQSLGGYRSQSLDSDQLMVASGEFVTPMTTLPQYVDGS----ILHPAKLCEVGEENICSS 273

Query: 62  IPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSSS 121
           +PQ+ AP QDLDP TKLSSF NGYYPQDQC+  NQMAMEQIDMIMSSILQ P C   SSS
Sbjct: 274 VPQISAPSQDLDPFTKLSSFPNGYYPQDQCLAANQMAMEQIDMIMSSILQIPSC---SSS 333

Query: 122 SSSLGLSGLSSDLVSSSWG 141
           S+ LGLS LSS+LVSSSWG
Sbjct: 334 SALLGLSELSSNLVSSSWG 345

[Close]

BLAST of MELO3C013071.2 vs. TrEMBL
Match: tr|A0A1S3BHU9|A0A1S3BHU9_CUCME (transcription factor MYB26 OS=Cucumis melo OX=3656 GN=LOC103490029 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-62
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 60
           MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS
Sbjct: 215 MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 274

Query: 61  SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 120
           SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS
Sbjct: 275 SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 334

Query: 121 SSSSLGLSGLSSDLVSSSWGA 142
           SSSSLGLSGLSSDLVSSSWGA
Sbjct: 335 SSSSLGLSGLSSDLVSSSWGA 355

[Close]

BLAST of MELO3C013071.2 vs. TrEMBL
Match: tr|A0A0A0LGA8|A0A0A0LGA8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847340 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.8e-57
Identity = 118/141 (83.69%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 1   MWPSSGGYRHQPLNSDQPVVAIGEFVTPTATLPQYVDISXXXXXXXXXXXXXVGEENLCS 60
           MWPSSGGYR QPL+SDQPVVA GEFVTP ATLPQYVDIS             VGEEN+CS
Sbjct: 215 MWPSSGGYRLQPLDSDQPVVASGEFVTPAATLPQYVDISFLHPTTTMPKLCEVGEENICS 274

Query: 61  SIPQVPAPLQDLDPITKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 120
           SIPQ+PAPLQDLDPI KLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS
Sbjct: 275 SIPQIPAPLQDLDPIIKLSSFSNGYYPQDQCMVTNQMAMEQIDMIMSSILQNPPCSSLSS 334

Query: 121 SSSSLGLSGLSSDLVSSSWGA 142
           SSSSLGL+GLS+DLVSSSW A
Sbjct: 335 SSSSLGLTGLSNDLVSSSWDA 355

The following BLAST results are available for this feature:

BLAST of MELO3C013071.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447615.1	1.8e-62	100.00	PREDICTED: transcription factor MYB26 [Cucumis melo]	[more]
XP_004141218.1	8.8e-57	83.69	PREDICTED: transcription factor MYB86 [Cucumis sativus] >KGN59797.1 hypothetical...	[more]
XP_022955350.1	3.4e-40	70.50	transcription factor MYB26-like [Cucurbita moschata]	[more]
XP_023526888.1	3.4e-40	69.78	transcription factor MYB26-like [Cucurbita pepo subsp. pepo]	[more]
XP_023526354.1	7.5e-40	69.06	transcription factor MYB26-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235...	[more]

BLAST of MELO3C013071.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C013071.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C013071.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHU9\|A0A1S3BHU9_CUCME	1.2e-62	100.00	transcription factor MYB26 OS=Cucumis melo OX=3656 GN=LOC103490029 PE=4 SV=1	[more]
tr\|A0A0A0LGA8\|A0A0A0LGA8_CUCSA	5.8e-57	83.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G847340 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009834	plant-type secondary cell wall biogenesis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013071.2.1	MELO3C013071.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013071.2	CSPI03G41200	Wild cucumber (PI 183967)	cpimedB198
MELO3C013071.2	Cucsa.340960	Cucumber (Gy14) v1	cgymedB557
MELO3C013071.2	Lsi07G005960	Bottle gourd (USVL1VR-Ls)	lsimedB459
MELO3C013071.2	Cp4.1LG03g14570	Cucurbita pepo (Zucchini)	cpemedB676
MELO3C013071.2	CsGy3G038680	Cucumber (Gy14) v2	cgybmedB179
MELO3C013071.2	Cla012590	Watermelon (97103) v1	medwmB357
MELO3C013071.2	ClCG07G013940	Watermelon (Charleston Gray)	medwcgB345
MELO3C013071.2	Cla97C07G140720	Watermelon (97103) v2	medwmbB340
MELO3C013071.2	Bhi01G002141	Wax gourd	medwgoB400
MELO3C013071.2	CsaV3_3G043660	Cucumber (Chinese Long) v3	cucmedB204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013071.2	Cucumber (Gy14) v2	cgybmedB487
MELO3C013071.2	Cucumber (Gy14) v1	cgymedB561
MELO3C013071.2	Cucumber (Gy14) v1	cgymedB583
MELO3C013071.2	Cucurbita maxima (Rimu)	cmamedB259
MELO3C013071.2	Cucurbita maxima (Rimu)	cmamedB386
MELO3C013071.2	Cucurbita maxima (Rimu)	cmamedB486
MELO3C013071.2	Cucurbita maxima (Rimu)	cmamedB941
MELO3C013071.2	Cucurbita moschata (Rifu)	cmomedB241
MELO3C013071.2	Cucurbita moschata (Rifu)	cmomedB373
MELO3C013071.2	Cucurbita moschata (Rifu)	cmomedB472
MELO3C013071.2	Cucurbita moschata (Rifu)	cmomedB930
MELO3C013071.2	Cucurbita pepo (Zucchini)	cpemedB159
MELO3C013071.2	Cucurbita pepo (Zucchini)	cpemedB358
MELO3C013071.2	Cucurbita pepo (Zucchini)	cpemedB616
MELO3C013071.2	Cucurbita pepo (Zucchini)	cpemedB625
MELO3C013071.2	Cucurbita pepo (Zucchini)	cpemedB680
MELO3C013071.2	Wild cucumber (PI 183967)	cpimedB547
MELO3C013071.2	Cucumber (Chinese Long) v2	cumedB200
MELO3C013071.2	Cucumber (Chinese Long) v2	cumedB531
MELO3C013071.2	Melon (DHL92) v3.6.1	medmedB087
MELO3C013071.2	Bottle gourd (USVL1VR-Ls)	lsimedB456
MELO3C013071.2	Bottle gourd (USVL1VR-Ls)	lsimedB224
MELO3C013071.2	Watermelon (Charleston Gray)	medwcgB301
MELO3C013071.2	Watermelon (Charleston Gray)	medwcgB338
MELO3C013071.2	Watermelon (97103) v1	medwmB336
MELO3C013071.2	Watermelon (97103) v1	medwmB361
MELO3C013071.2	Silver-seed gourd	carmedB0127
MELO3C013071.2	Silver-seed gourd	carmedB0209
MELO3C013071.2	Silver-seed gourd	carmedB0213
MELO3C013071.2	Cucumber (Chinese Long) v3	cucmedB065
MELO3C013071.2	Cucumber (Chinese Long) v3	cucmedB559
MELO3C013071.2	Watermelon (97103) v2	medwmbB317
MELO3C013071.2	Watermelon (97103) v2	medwmbB332
MELO3C013071.2	Watermelon (97103) v2	medwmbB348
MELO3C013071.2	Wax gourd	medwgoB395
MELO3C013071.2	Wax gourd	medwgoB444
MELO3C013071.2	Wax gourd	medwgoB441