MELO3C013012T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013012T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA repair RadA
Location	chr4 : 15987166 .. 15987837 (-)
Sequence length	672

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCCCTCAGAACTATTTTCTATTCTCGAAAGCACTTTCTCATTTCCTCATCTTTCTCTTCTTATAAAACATCCCCCATCTCCTGCCGGTCTTCCCTCAGCCCTAACTCTTCCCTCTTTCACTACGCCCCCCGTTTCAACACCGCTCACCTTTCGACCGATGCCCGGAACGGCGATCCCCTCGCCGGTTCCGGTCCAGAAAATGAAAAACGTCGCAACGTTTGGTCTCTTTACGGCTCCGTTTCGAGTAAGCTTACCACTCAAAGGGTCGGAAGCAGTAGCGATGGAAAAGAGCCCGAACAGAGCCTTGGAGTTCTAAATGGCGATGGGGCAGAGGATTCATTGAACGAGAAGACTTCGGAGAGTGTGAGGAAAGTGGGTTTAGATGATAAGTTGACTTGCAAGACGAATTCGGGGAAGCTTGCGGGATTGAAGAAGAAGAGTAAAGTTTCTTGGGTTTGTTCGGACTGTGGGCATAGTGAGGGGCAGTGGTGGGGAACTTGTCAGTCCTGTCGAAAGGTTGGGACAATGAAGCAGTTTTCAGTGGGGAATGATAGTGAAGGGGGGAGTCGAACATGGCTTCCAAAGCAGGTCACTAACGTGAATCCTATGCGGTTAACAGATGTGAACCGAGGGATCAATGCTCAGGATTGGAGACTTCCCTTGTAA

mRNA sequence

ATGAAGTCCCTCAGAACTATTTTCTATTCTCGAAAGCACTTTCTCATTTCCTCATCTTTCTCTTCTTATAAAACATCCCCCATCTCCTGCCGGTCTTCCCTCAGCCCTAACTCTTCCCTCTTTCACTACGCCCCCCGTTTCAACACCGCTCACCTTTCGACCGATGCCCGGAACGGCGATCCCCTCGCCGGTTCCGGTCCAGAAAATGAAAAACGTCGCAACGTTTGGTCTCTTTACGGCTCCGTTTCGAGTAAGCTTACCACTCAAAGGGTCGGAAGCAGTAGCGATGGAAAAGAGCCCGAACAGAGCCTTGGAGTTCTAAATGGCGATGGGGCAGAGGATTCATTGAACGAGAAGACTTCGGAGAGTGTGAGGAAAGTGGGTTTAGATGATAAGTTGACTTGCAAGACGAATTCGGGGAAGCTTGCGGGATTGAAGAAGAAGAGTAAAGTTTCTTGGGTTTGTTCGGACTGTGGGCATAGTGAGGGGCAGTGGTGGGGAACTTGTCAGTCCTGTCGAAAGGTTGGGACAATGAAGCAGTTTTCAGTGGGGAATGATAGTGAAGGGGGGAGTCGAACATGGCTTCCAAAGCAGGTCACTAACGTGAATCCTATGCGGTTAACAGATGTGAACCGAGGGATCAATGCTCAGGATTGGAGACTTCCCTTGTAA

Coding sequence (CDS)

ATGAAGTCCCTCAGAACTATTTTCTATTCTCGAAAGCACTTTCTCATTTCCTCATCTTTCTCTTCTTATAAAACATCCCCCATCTCCTGCCGGTCTTCCCTCAGCCCTAACTCTTCCCTCTTTCACTACGCCCCCCGTTTCAACACCGCTCACCTTTCGACCGATGCCCGGAACGGCGATCCCCTCGCCGGTTCCGGTCCAGAAAATGAAAAACGTCGCAACGTTTGGTCTCTTTACGGCTCCGTTTCGAGTAAGCTTACCACTCAAAGGGTCGGAAGCAGTAGCGATGGAAAAGAGCCCGAACAGAGCCTTGGAGTTCTAAATGGCGATGGGGCAGAGGATTCATTGAACGAGAAGACTTCGGAGAGTGTGAGGAAAGTGGGTTTAGATGATAAGTTGACTTGCAAGACGAATTCGGGGAAGCTTGCGGGATTGAAGAAGAAGAGTAAAGTTTCTTGGGTTTGTTCGGACTGTGGGCATAGTGAGGGGCAGTGGTGGGGAACTTGTCAGTCCTGTCGAAAGGTTGGGACAATGAAGCAGTTTTCAGTGGGGAATGATAGTGAAGGGGGGAGTCGAACATGGCTTCCAAAGCAGGTCACTAACGTGAATCCTATGCGGTTAACAGATGTGAACCGAGGGATCAATGCTCAGGATTGGAGACTTCCCTTGTAA

Protein sequence

MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGDPLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKTSESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQFSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL*

Homology

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BLAST of MELO3C013012T1 vs. TrEMBL
Match: A0A0A0LBL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G434980 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 3.7e-100
Identity = 180/223 (80.72%), Postives = 195/223 (87.44%), Query Frame = 1


Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD 60
           M SLRTI YSRKHFLISS+FSSY TSPISCR  L+PNSSLFHYA      HLST A N D
Sbjct: 6   MNSLRTILYSRKHFLISSTFSSYTTSPISCRFYLAPNSSLFHYA------HLSTHAPNAD 65

Query: 61  PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT 120
           PLAGSGPE+EK RNVWS+YGSVSSKL TQRVGSS DGK+PE S+GV NGDG+ED LN+KT
Sbjct: 66  PLAGSGPEHEKGRNVWSIYGSVSSKLATQRVGSSIDGKDPEPSIGVQNGDGSEDLLNKKT 125

Query: 121 SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ 180
           SESVRKVGL+D+LTCK NSGK+ GLKKK+KVSWVCS+CGHSEGQWWGTCQSC  VGTMKQ
Sbjct: 126 SESVRKVGLEDRLTCKPNSGKVVGLKKKNKVSWVCSNCGHSEGQWWGTCQSCHMVGTMKQ 185

Query: 181 FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           FSVGNDS G  RTWLPK+VTNVNP+RLTDVNRGIN QDWRLPL
Sbjct: 186 FSVGNDSGGERRTWLPKEVTNVNPLRLTDVNRGINTQDWRLPL 222

[Close]

BLAST of MELO3C013012T1 vs. TrEMBL
Match: F6HY77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03190 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.3e-32
Identity = 92/244 (37.70%), Postives = 121/244 (49.59%), Query Frame = 1


Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNG 60
           M++LRT FY++KH            SP IS +S  +P  S          +  ST     
Sbjct: 6   MRALRT-FYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDAD 65

Query: 61  DPLAGSGPE------NEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAE 120
            P  G G        N  RR  W+++ +  S+ + ++   S  G E  + + V  G G  
Sbjct: 66  SPSIGIGSSSPDTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSE-VSVNKGFG-- 125

Query: 121 DSLNEKTSESVRKVGLDDKL-TCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQS 180
                    SV K     +     ++ G + G KK KSKV WVCSDCG+S+GQWWG C+ 
Sbjct: 126 ---------SVEKARFGGRYGLASSDGGVVRGRKKGKSKVCWVCSDCGYSDGQWWGACRE 185

Query: 181 CRKVGTMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDW 224
           C KVGTMKQFS G    GGS            R+WLP+Q T V P+RLTDVNRGIN  +W
Sbjct: 186 CNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNW 236

[Close]

BLAST of MELO3C013012T1 vs. TrEMBL
Match: A5AQZ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033043 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.3e-32
Identity = 92/244 (37.70%), Postives = 121/244 (49.59%), Query Frame = 1


Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNG 60
           M++LRT FY++KH            SP IS +S  +P  S          +  ST     
Sbjct: 1   MRALRT-FYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDAD 60

Query: 61  DPLAGSGPE------NEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAE 120
            P  G G        N  RR  W+++ +  S+ + ++   S  G E  + + V  G G  
Sbjct: 61  SPSIGIGSSSPDTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSE-VSVNKGFG-- 120

Query: 121 DSLNEKTSESVRKVGLDDKL-TCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQS 180
                    SV K     +     ++ G + G KK KSKV WVCSDCG+S+GQWWG C+ 
Sbjct: 121 ---------SVEKARFGGRYGLASSDGGVVRGRKKGKSKVCWVCSDCGYSDGQWWGACRE 180

Query: 181 CRKVGTMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDW 224
           C KVGTMKQFS G    GGS            R+WLP+Q T V P+RLTDVNRGIN  +W
Sbjct: 181 CNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNW 231

[Close]

BLAST of MELO3C013012T1 vs. TrEMBL
Match: A5AQZ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033044 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-30
Identity = 90/239 (37.66%), Postives = 116/239 (48.54%), Query Frame = 1


Query: 6   TIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGDPLAG 65
           T FY+R+H L          SP IS +S  +PN S          +  ST      P  G
Sbjct: 5   TTFYTRRHLLSPKKHIPISPSPLISFQSHQNPNFSRHFRCTNHRRSEESTSLDADSPGIG 64

Query: 66  S------GPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNE 125
           S      G  N  R   W+++ +  S+         SD +E E        + +E    +
Sbjct: 65  SCSSSPDGETNSSRPRTWTVFNTEGSQY--------SDIQESESKSAAERSEVSE----K 124

Query: 126 KTSESVRKVGLDDK-LTCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQSCRKVG 185
           +   SV K  L  + +   ++ G + G KK KSKV WVCSDCGHS+G WWG C+ C KVG
Sbjct: 125 RGYGSVGKARLGGRYVPASSDGGVVRGRKKGKSKVFWVCSDCGHSDGHWWGACRECNKVG 184

Query: 186 TMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           TMKQFS G    GGS            R+WLP+Q T   P RLTDVNRGIN  +WR+PL
Sbjct: 185 TMKQFSEGESGIGGSRASGFEVSENMVRSWLPQQPTETQPQRLTDVNRGINQLNWRIPL 231

[Close]

BLAST of MELO3C013012T1 vs. TrEMBL
Match: A0A166EM88_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007591 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.4e-28
Identity = 81/232 (34.91%), Postives = 127/232 (54.74%), Query Frame = 1


Query: 7   IFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGDPLAGSG 66
           + +++KH +  S+        +SC+ SL+PN     +     + H  T+  N      S 
Sbjct: 10  LIHAQKHLINLST-------RLSCKYSLNPNFHPQSHTTPQRSIHF-TNHLNSWTSFNSE 69

Query: 67  PENEKRRNVWSLYGSVSSKLTTQRVGSSSDGK-EPEQSLGVLNGDGAEDSLNEKTSESVR 126
           P+++ +  V ++Y  ++  L TQRV +  D   E +Q + +++GDG     N++T    +
Sbjct: 70  PKSDTK--VTAIYDPITGSLITQRVSNVYDNDDENKQEVPIVSGDGDG---NDRTFGVGK 129

Query: 127 KVGLDDKLTCKTNSGKLAGLKKKS---KVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQFS 186
           K  L    T   N G ++G  KK    K SWVC  CG+S+GQWWG+C+SC  VGTMK+FS
Sbjct: 130 KGNLRSGPTSWKNFGAVSGGGKKKGKVKTSWVCESCGYSDGQWWGSCRSCDGVGTMKRFS 189

Query: 187 VGNDSEGG-----------SRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
            G+  EG              TWLP+Q  ++ P+RLTDVNRG++ ++WR+PL
Sbjct: 190 EGDGGEGRISSGFGVSEKVMGTWLPQQAGDIGPVRLTDVNRGVDQKEWRIPL 228

[Close]

BLAST of MELO3C013012T1 vs. TAIR10
Match: AT5G50340.1 (AT5G50340.1 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-22
Identity = 64/167 (38.32%), Postives = 86/167 (51.50%), Query Frame = 1


Query: 82  VSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKTSESVRKVGLDDKLTCKT---- 141
           V  +L  +R+ SS     P  S+  L+    + + N +  ++  K+G  D  + K+    
Sbjct: 35  VRFRLRLRRLSSS-----PVASVFDLHSSNQDANSNREDKDT--KIGFSDDKSRKSGSNP 94

Query: 142 ---NSGKLA---GLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQFSVGNDS---- 201
              N G++      K KSK  WVC  CGHSEGQWWG+C++C KVGTMK+FS G++S    
Sbjct: 95  PRWNPGEVVMNKSKKGKSKTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASG 154

Query: 202 -----------EGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
                      EG   +WLP+Q T V P RLTDV  GI  Q WR+ L
Sbjct: 155 GGGNGTGLGFTEGKGLSWLPEQAT-VQPHRLTDVIHGITQQQWRISL 193

[Close]

BLAST of MELO3C013012T1 vs. NCBI nr
Match: gi|659093501|ref|XP_008447567.1| (PREDICTED: uncharacterized protein LOC103489983 isoform X1 [Cucumis melo])

HSP 1 Score: 460.7 bits (1184), Expect = 1.5e-126
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1


Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD 60
           MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD
Sbjct: 6   MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD 65

Query: 61  PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT 120
           PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT
Sbjct: 66  PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT 125

Query: 121 SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ 180
           SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ
Sbjct: 126 SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ 185

Query: 181 FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL
Sbjct: 186 FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 228

[Close]

BLAST of MELO3C013012T1 vs. NCBI nr
Match: gi|778681263|ref|XP_011651479.1| (PREDICTED: uncharacterized protein LOC101217616 [Cucumis sativus])

HSP 1 Score: 372.5 bits (955), Expect = 5.3e-100
Identity = 180/223 (80.72%), Postives = 195/223 (87.44%), Query Frame = 1


Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD 60
           M SLRTI YSRKHFLISS+FSSY TSPISCR  L+PNSSLFHYA      HLST A N D
Sbjct: 6   MNSLRTILYSRKHFLISSTFSSYTTSPISCRFYLAPNSSLFHYA------HLSTHAPNAD 65

Query: 61  PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT 120
           PLAGSGPE+EK RNVWS+YGSVSSKL TQRVGSS DGK+PE S+GV NGDG+ED LN+KT
Sbjct: 66  PLAGSGPEHEKGRNVWSIYGSVSSKLATQRVGSSIDGKDPEPSIGVQNGDGSEDLLNKKT 125

Query: 121 SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ 180
           SESVRKVGL+D+LTCK NSGK+ GLKKK+KVSWVCS+CGHSEGQWWGTCQSC  VGTMKQ
Sbjct: 126 SESVRKVGLEDRLTCKPNSGKVVGLKKKNKVSWVCSNCGHSEGQWWGTCQSCHMVGTMKQ 185

Query: 181 FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           FSVGNDS G  RTWLPK+VTNVNP+RLTDVNRGIN QDWRLPL
Sbjct: 186 FSVGNDSGGERRTWLPKEVTNVNPLRLTDVNRGINTQDWRLPL 222

[Close]

BLAST of MELO3C013012T1 vs. NCBI nr
Match: gi|147856590|emb|CAN82494.1| (hypothetical protein VITISV_033043 [Vitis vinifera])

HSP 1 Score: 146.4 bits (368), Expect = 6.2e-32
Identity = 92/244 (37.70%), Postives = 121/244 (49.59%), Query Frame = 1


Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNG 60
           M++LRT FY++KH            SP IS +S  +P  S          +  ST     
Sbjct: 1   MRALRT-FYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDAD 60

Query: 61  DPLAGSGPE------NEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAE 120
            P  G G        N  RR  W+++ +  S+ + ++   S  G E  + + V  G G  
Sbjct: 61  SPSIGIGSSSPDTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSE-VSVNKGFG-- 120

Query: 121 DSLNEKTSESVRKVGLDDKL-TCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQS 180
                    SV K     +     ++ G + G KK KSKV WVCSDCG+S+GQWWG C+ 
Sbjct: 121 ---------SVEKARFGGRYGLASSDGGVVRGRKKGKSKVCWVCSDCGYSDGQWWGACRE 180

Query: 181 CRKVGTMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDW 224
           C KVGTMKQFS G    GGS            R+WLP+Q T V P+RLTDVNRGIN  +W
Sbjct: 181 CNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNW 231

[Close]

BLAST of MELO3C013012T1 vs. NCBI nr
Match: gi|731402242|ref|XP_002277638.2| (PREDICTED: uncharacterized protein LOC100258398 [Vitis vinifera])

HSP 1 Score: 146.4 bits (368), Expect = 6.2e-32
Identity = 92/244 (37.70%), Postives = 121/244 (49.59%), Query Frame = 1


Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNG 60
           M++LRT FY++KH            SP IS +S  +P  S          +  ST     
Sbjct: 6   MRALRT-FYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDAD 65

Query: 61  DPLAGSGPE------NEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAE 120
            P  G G        N  RR  W+++ +  S+ + ++   S  G E  + + V  G G  
Sbjct: 66  SPSIGIGSSSPDTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSE-VSVNKGFG-- 125

Query: 121 DSLNEKTSESVRKVGLDDKL-TCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQS 180
                    SV K     +     ++ G + G KK KSKV WVCSDCG+S+GQWWG C+ 
Sbjct: 126 ---------SVEKARFGGRYGLASSDGGVVRGRKKGKSKVCWVCSDCGYSDGQWWGACRE 185

Query: 181 CRKVGTMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDW 224
           C KVGTMKQFS G    GGS            R+WLP+Q T V P+RLTDVNRGIN  +W
Sbjct: 186 CNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNW 236

[Close]

BLAST of MELO3C013012T1 vs. NCBI nr
Match: gi|147856591|emb|CAN82495.1| (hypothetical protein VITISV_033044 [Vitis vinifera])

HSP 1 Score: 139.8 bits (351), Expect = 5.8e-30
Identity = 90/239 (37.66%), Postives = 116/239 (48.54%), Query Frame = 1


Query: 6   TIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGDPLAG 65
           T FY+R+H L          SP IS +S  +PN S          +  ST      P  G
Sbjct: 5   TTFYTRRHLLSPKKHIPISPSPLISFQSHQNPNFSRHFRCTNHRRSEESTSLDADSPGIG 64

Query: 66  S------GPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNE 125
           S      G  N  R   W+++ +  S+         SD +E E        + +E    +
Sbjct: 65  SCSSSPDGETNSSRPRTWTVFNTEGSQY--------SDIQESESKSAAERSEVSE----K 124

Query: 126 KTSESVRKVGLDDK-LTCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQSCRKVG 185
           +   SV K  L  + +   ++ G + G KK KSKV WVCSDCGHS+G WWG C+ C KVG
Sbjct: 125 RGYGSVGKARLGGRYVPASSDGGVVRGRKKGKSKVFWVCSDCGHSDGHWWGACRECNKVG 184

Query: 186 TMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           TMKQFS G    GGS            R+WLP+Q T   P RLTDVNRGIN  +WR+PL
Sbjct: 185 TMKQFSEGESGIGGSRASGFEVSENMVRSWLPQQPTETQPQRLTDVNRGINQLNWRIPL 231

The following BLAST results are available for this feature:

BLAST of MELO3C013012T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBL7_CUCSA	3.7e-100	80.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G434980 PE=4 SV=1	[more]
F6HY77_VITVI	4.3e-32	37.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03190 PE=4 SV=...	[more]
A5AQZ1_VITVI	4.3e-32	37.70	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033043 PE=4 SV=1	[more]
A5AQZ2_VITVI	4.0e-30	37.66	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033044 PE=4 SV=1	[more]
A0A166EM88_DAUCA	8.4e-28	34.91	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007591 PE=4 SV=1	[more]

BLAST of MELO3C013012T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50340.1	1.6e-22	38.32	ATP-dependent peptidases;nucleotide binding;serine-type endopeptidas...	[more]

BLAST of MELO3C013012T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093501\|ref\|XP_008447567.1\|	1.5e-126	100.00	PREDICTED: uncharacterized protein LOC103489983 isoform X1 [Cucumis melo]	[more]
gi\|778681263\|ref\|XP_011651479.1\|	5.3e-100	80.72	PREDICTED: uncharacterized protein LOC101217616 [Cucumis sativus]	[more]
gi\|147856590\|emb\|CAN82494.1\|	6.2e-32	37.70	hypothetical protein VITISV_033043 [Vitis vinifera]	[more]
gi\|731402242\|ref\|XP_002277638.2\|	6.2e-32	37.70	PREDICTED: uncharacterized protein LOC100258398 [Vitis vinifera]	[more]
gi\|147856591\|emb\|CAN82495.1\|	5.8e-30	37.66	hypothetical protein VITISV_033044 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013012	MELO3C013012	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C013012T1	MELO3C013012T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013012T1.cds1	MELO3C013012T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32472	FAMILY NOT NAMED	coord: 148..223 score: 2.5
None	No IPR available	PANTHER	PTHR32472:SF10	DNA REPAIR PROTEIN RADA-LIKE PROTEIN	coord: 148..223 score: 2.5