MELO3C013012 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C013012
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA repair RadA
Locationchr4 : 15987166 .. 15987837 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCCCTCAGAACTATTTTCTATTCTCGAAAGCACTTTCTCATTTCCTCATCTTTCTCTTCTTATAAAACATCCCCCATCTCCTGCCGGTCTTCCCTCAGCCCTAACTCTTCCCTCTTTCACTACGCCCCCCGTTTCAACACCGCTCACCTTTCGACCGATGCCCGGAACGGCGATCCCCTCGCCGGTTCCGGTCCAGAAAATGAAAAACGTCGCAACGTTTGGTCTCTTTACGGCTCCGTTTCGAGTAAGCTTACCACTCAAAGGGTCGGAAGCAGTAGCGATGGAAAAGAGCCCGAACAGAGCCTTGGAGTTCTAAATGGCGATGGGGCAGAGGATTCATTGAACGAGAAGACTTCGGAGAGTGTGAGGAAAGTGGGTTTAGATGATAAGTTGACTTGCAAGACGAATTCGGGGAAGCTTGCGGGATTGAAGAAGAAGAGTAAAGTTTCTTGGGTTTGTTCGGACTGTGGGCATAGTGAGGGGCAGTGGTGGGGAACTTGTCAGTCCTGTCGAAAGGTTGGGACAATGAAGCAGTTTTCAGTGGGGAATGATAGTGAAGGGGGGAGTCGAACATGGCTTCCAAAGCAGGTCACTAACGTGAATCCTATGCGGTTAACAGATGTGAACCGAGGGATCAATGCTCAGGATTGGAGACTTCCCTTGTAA

mRNA sequence

ATGAAGTCCCTCAGAACTATTTTCTATTCTCGAAAGCACTTTCTCATTTCCTCATCTTTCTCTTCTTATAAAACATCCCCCATCTCCTGCCGGTCTTCCCTCAGCCCTAACTCTTCCCTCTTTCACTACGCCCCCCGTTTCAACACCGCTCACCTTTCGACCGATGCCCGGAACGGCGATCCCCTCGCCGGTTCCGGTCCAGAAAATGAAAAACGTCGCAACGTTTGGTCTCTTTACGGCTCCGTTTCGAGTAAGCTTACCACTCAAAGGGTCGGAAGCAGTAGCGATGGAAAAGAGCCCGAACAGAGCCTTGGAGTTCTAAATGGCGATGGGGCAGAGGATTCATTGAACGAGAAGACTTCGGAGAGTGTGAGGAAAGTGGGTTTAGATGATAAGTTGACTTGCAAGACGAATTCGGGGAAGCTTGCGGGATTGAAGAAGAAGAGTAAAGTTTCTTGGGTTTGTTCGGACTGTGGGCATAGTGAGGGGCAGTGGTGGGGAACTTGTCAGTCCTGTCGAAAGGTTGGGACAATGAAGCAGTTTTCAGTGGGGAATGATAGTGAAGGGGGGAGTCGAACATGGCTTCCAAAGCAGGTCACTAACGTGAATCCTATGCGGTTAACAGATGTGAACCGAGGGATCAATGCTCAGGATTGGAGACTTCCCTTGTAA

Coding sequence (CDS)

ATGAAGTCCCTCAGAACTATTTTCTATTCTCGAAAGCACTTTCTCATTTCCTCATCTTTCTCTTCTTATAAAACATCCCCCATCTCCTGCCGGTCTTCCCTCAGCCCTAACTCTTCCCTCTTTCACTACGCCCCCCGTTTCAACACCGCTCACCTTTCGACCGATGCCCGGAACGGCGATCCCCTCGCCGGTTCCGGTCCAGAAAATGAAAAACGTCGCAACGTTTGGTCTCTTTACGGCTCCGTTTCGAGTAAGCTTACCACTCAAAGGGTCGGAAGCAGTAGCGATGGAAAAGAGCCCGAACAGAGCCTTGGAGTTCTAAATGGCGATGGGGCAGAGGATTCATTGAACGAGAAGACTTCGGAGAGTGTGAGGAAAGTGGGTTTAGATGATAAGTTGACTTGCAAGACGAATTCGGGGAAGCTTGCGGGATTGAAGAAGAAGAGTAAAGTTTCTTGGGTTTGTTCGGACTGTGGGCATAGTGAGGGGCAGTGGTGGGGAACTTGTCAGTCCTGTCGAAAGGTTGGGACAATGAAGCAGTTTTCAGTGGGGAATGATAGTGAAGGGGGGAGTCGAACATGGCTTCCAAAGCAGGTCACTAACGTGAATCCTATGCGGTTAACAGATGTGAACCGAGGGATCAATGCTCAGGATTGGAGACTTCCCTTGTAA

Protein sequence

MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGDPLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKTSESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQFSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL*
Homology
[Close]
BLAST of MELO3C013012 vs. TrEMBL
Match: A0A0A0LBL7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G434980 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 3.7e-100
Identity = 180/223 (80.72%), Postives = 195/223 (87.44%), Query Frame = 1 

Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD 60
           M SLRTI YSRKHFLISS+FSSY TSPISCR  L+PNSSLFHYA      HLST A N D
Sbjct: 6   MNSLRTILYSRKHFLISSTFSSYTTSPISCRFYLAPNSSLFHYA------HLSTHAPNAD 65

Query: 61  PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT 120
           PLAGSGPE+EK RNVWS+YGSVSSKL TQRVGSS DGK+PE S+GV NGDG+ED LN+KT
Sbjct: 66  PLAGSGPEHEKGRNVWSIYGSVSSKLATQRVGSSIDGKDPEPSIGVQNGDGSEDLLNKKT 125

Query: 121 SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ 180
           SESVRKVGL+D+LTCK NSGK+ GLKKK+KVSWVCS+CGHSEGQWWGTCQSC  VGTMKQ
Sbjct: 126 SESVRKVGLEDRLTCKPNSGKVVGLKKKNKVSWVCSNCGHSEGQWWGTCQSCHMVGTMKQ 185

Query: 181 FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           FSVGNDS G  RTWLPK+VTNVNP+RLTDVNRGIN QDWRLPL
Sbjct: 186 FSVGNDSGGERRTWLPKEVTNVNPLRLTDVNRGINTQDWRLPL 222

[Close]
BLAST of MELO3C013012 vs. TrEMBL
Match: F6HY77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03190 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.3e-32
Identity = 92/244 (37.70%), Postives = 121/244 (49.59%), Query Frame = 1 

Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNG 60
           M++LRT FY++KH            SP IS +S  +P  S          +  ST     
Sbjct: 6   MRALRT-FYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDAD 65

Query: 61  DPLAGSGPE------NEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAE 120
            P  G G        N  RR  W+++ +  S+ + ++   S  G E  + + V  G G  
Sbjct: 66  SPSIGIGSSSPDTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSE-VSVNKGFG-- 125

Query: 121 DSLNEKTSESVRKVGLDDKL-TCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQS 180
                    SV K     +     ++ G + G KK KSKV WVCSDCG+S+GQWWG C+ 
Sbjct: 126 ---------SVEKARFGGRYGLASSDGGVVRGRKKGKSKVCWVCSDCGYSDGQWWGACRE 185

Query: 181 CRKVGTMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDW 224
           C KVGTMKQFS G    GGS            R+WLP+Q T V P+RLTDVNRGIN  +W
Sbjct: 186 CNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNW 236

[Close]
BLAST of MELO3C013012 vs. TrEMBL
Match: A5AQZ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033043 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.3e-32
Identity = 92/244 (37.70%), Postives = 121/244 (49.59%), Query Frame = 1 

Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNG 60
           M++LRT FY++KH            SP IS +S  +P  S          +  ST     
Sbjct: 1   MRALRT-FYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDAD 60

Query: 61  DPLAGSGPE------NEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAE 120
            P  G G        N  RR  W+++ +  S+ + ++   S  G E  + + V  G G  
Sbjct: 61  SPSIGIGSSSPDTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSE-VSVNKGFG-- 120

Query: 121 DSLNEKTSESVRKVGLDDKL-TCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQS 180
                    SV K     +     ++ G + G KK KSKV WVCSDCG+S+GQWWG C+ 
Sbjct: 121 ---------SVEKARFGGRYGLASSDGGVVRGRKKGKSKVCWVCSDCGYSDGQWWGACRE 180

Query: 181 CRKVGTMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDW 224
           C KVGTMKQFS G    GGS            R+WLP+Q T V P+RLTDVNRGIN  +W
Sbjct: 181 CNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNW 231

[Close]
BLAST of MELO3C013012 vs. TrEMBL
Match: A5AQZ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033044 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-30
Identity = 90/239 (37.66%), Postives = 116/239 (48.54%), Query Frame = 1 

Query: 6   TIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGDPLAG 65
           T FY+R+H L          SP IS +S  +PN S          +  ST      P  G
Sbjct: 5   TTFYTRRHLLSPKKHIPISPSPLISFQSHQNPNFSRHFRCTNHRRSEESTSLDADSPGIG 64

Query: 66  S------GPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNE 125
           S      G  N  R   W+++ +  S+         SD +E E        + +E    +
Sbjct: 65  SCSSSPDGETNSSRPRTWTVFNTEGSQY--------SDIQESESKSAAERSEVSE----K 124

Query: 126 KTSESVRKVGLDDK-LTCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQSCRKVG 185
           +   SV K  L  + +   ++ G + G KK KSKV WVCSDCGHS+G WWG C+ C KVG
Sbjct: 125 RGYGSVGKARLGGRYVPASSDGGVVRGRKKGKSKVFWVCSDCGHSDGHWWGACRECNKVG 184

Query: 186 TMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           TMKQFS G    GGS            R+WLP+Q T   P RLTDVNRGIN  +WR+PL
Sbjct: 185 TMKQFSEGESGIGGSRASGFEVSENMVRSWLPQQPTETQPQRLTDVNRGINQLNWRIPL 231

[Close]
BLAST of MELO3C013012 vs. TrEMBL
Match: A0A166EM88_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007591 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.4e-28
Identity = 81/232 (34.91%), Postives = 127/232 (54.74%), Query Frame = 1 

Query: 7   IFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGDPLAGSG 66
           + +++KH +  S+        +SC+ SL+PN     +     + H  T+  N      S 
Sbjct: 10  LIHAQKHLINLST-------RLSCKYSLNPNFHPQSHTTPQRSIHF-TNHLNSWTSFNSE 69

Query: 67  PENEKRRNVWSLYGSVSSKLTTQRVGSSSDGK-EPEQSLGVLNGDGAEDSLNEKTSESVR 126
           P+++ +  V ++Y  ++  L TQRV +  D   E +Q + +++GDG     N++T    +
Sbjct: 70  PKSDTK--VTAIYDPITGSLITQRVSNVYDNDDENKQEVPIVSGDGDG---NDRTFGVGK 129

Query: 127 KVGLDDKLTCKTNSGKLAGLKKKS---KVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQFS 186
           K  L    T   N G ++G  KK    K SWVC  CG+S+GQWWG+C+SC  VGTMK+FS
Sbjct: 130 KGNLRSGPTSWKNFGAVSGGGKKKGKVKTSWVCESCGYSDGQWWGSCRSCDGVGTMKRFS 189

Query: 187 VGNDSEGG-----------SRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
            G+  EG              TWLP+Q  ++ P+RLTDVNRG++ ++WR+PL
Sbjct: 190 EGDGGEGRISSGFGVSEKVMGTWLPQQAGDIGPVRLTDVNRGVDQKEWRIPL 228

[Close]
BLAST of MELO3C013012 vs. TAIR10
Match: AT5G50340.1 (AT5G50340.1 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-22
Identity = 64/167 (38.32%), Postives = 86/167 (51.50%), Query Frame = 1 

Query: 82  VSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKTSESVRKVGLDDKLTCKT---- 141
           V  +L  +R+ SS     P  S+  L+    + + N +  ++  K+G  D  + K+    
Sbjct: 35  VRFRLRLRRLSSS-----PVASVFDLHSSNQDANSNREDKDT--KIGFSDDKSRKSGSNP 94

Query: 142 ---NSGKLA---GLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQFSVGNDS---- 201
              N G++      K KSK  WVC  CGHSEGQWWG+C++C KVGTMK+FS G++S    
Sbjct: 95  PRWNPGEVVMNKSKKGKSKTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASG 154

Query: 202 -----------EGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
                      EG   +WLP+Q T V P RLTDV  GI  Q WR+ L
Sbjct: 155 GGGNGTGLGFTEGKGLSWLPEQAT-VQPHRLTDVIHGITQQQWRISL 193

[Close]
BLAST of MELO3C013012 vs. NCBI nr
Match: gi|659093501|ref|XP_008447567.1| (PREDICTED: uncharacterized protein LOC103489983 isoform X1 [Cucumis melo])

HSP 1 Score: 460.7 bits (1184), Expect = 1.5e-126
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1 

Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD 60
           MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD
Sbjct: 6   MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD 65

Query: 61  PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT 120
           PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT
Sbjct: 66  PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT 125

Query: 121 SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ 180
           SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ
Sbjct: 126 SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ 185

Query: 181 FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL
Sbjct: 186 FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 228

[Close]
BLAST of MELO3C013012 vs. NCBI nr
Match: gi|778681263|ref|XP_011651479.1| (PREDICTED: uncharacterized protein LOC101217616 [Cucumis sativus])

HSP 1 Score: 372.5 bits (955), Expect = 5.3e-100
Identity = 180/223 (80.72%), Postives = 195/223 (87.44%), Query Frame = 1 

Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSPISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGD 60
           M SLRTI YSRKHFLISS+FSSY TSPISCR  L+PNSSLFHYA      HLST A N D
Sbjct: 6   MNSLRTILYSRKHFLISSTFSSYTTSPISCRFYLAPNSSLFHYA------HLSTHAPNAD 65

Query: 61  PLAGSGPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNEKT 120
           PLAGSGPE+EK RNVWS+YGSVSSKL TQRVGSS DGK+PE S+GV NGDG+ED LN+KT
Sbjct: 66  PLAGSGPEHEKGRNVWSIYGSVSSKLATQRVGSSIDGKDPEPSIGVQNGDGSEDLLNKKT 125

Query: 121 SESVRKVGLDDKLTCKTNSGKLAGLKKKSKVSWVCSDCGHSEGQWWGTCQSCRKVGTMKQ 180
           SESVRKVGL+D+LTCK NSGK+ GLKKK+KVSWVCS+CGHSEGQWWGTCQSC  VGTMKQ
Sbjct: 126 SESVRKVGLEDRLTCKPNSGKVVGLKKKNKVSWVCSNCGHSEGQWWGTCQSCHMVGTMKQ 185

Query: 181 FSVGNDSEGGSRTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           FSVGNDS G  RTWLPK+VTNVNP+RLTDVNRGIN QDWRLPL
Sbjct: 186 FSVGNDSGGERRTWLPKEVTNVNPLRLTDVNRGINTQDWRLPL 222

[Close]
BLAST of MELO3C013012 vs. NCBI nr
Match: gi|147856590|emb|CAN82494.1| (hypothetical protein VITISV_033043 [Vitis vinifera])

HSP 1 Score: 146.4 bits (368), Expect = 6.2e-32
Identity = 92/244 (37.70%), Postives = 121/244 (49.59%), Query Frame = 1 

Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNG 60
           M++LRT FY++KH            SP IS +S  +P  S          +  ST     
Sbjct: 1   MRALRT-FYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDAD 60

Query: 61  DPLAGSGPE------NEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAE 120
            P  G G        N  RR  W+++ +  S+ + ++   S  G E  + + V  G G  
Sbjct: 61  SPSIGIGSSSPDTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSE-VSVNKGFG-- 120

Query: 121 DSLNEKTSESVRKVGLDDKL-TCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQS 180
                    SV K     +     ++ G + G KK KSKV WVCSDCG+S+GQWWG C+ 
Sbjct: 121 ---------SVEKARFGGRYGLASSDGGVVRGRKKGKSKVCWVCSDCGYSDGQWWGACRE 180

Query: 181 CRKVGTMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDW 224
           C KVGTMKQFS G    GGS            R+WLP+Q T V P+RLTDVNRGIN  +W
Sbjct: 181 CNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNW 231

[Close]
BLAST of MELO3C013012 vs. NCBI nr
Match: gi|731402242|ref|XP_002277638.2| (PREDICTED: uncharacterized protein LOC100258398 [Vitis vinifera])

HSP 1 Score: 146.4 bits (368), Expect = 6.2e-32
Identity = 92/244 (37.70%), Postives = 121/244 (49.59%), Query Frame = 1 

Query: 1   MKSLRTIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNG 60
           M++LRT FY++KH            SP IS +S  +P  S          +  ST     
Sbjct: 6   MRALRT-FYTQKHLFNPKKHIPISLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDAD 65

Query: 61  DPLAGSGPE------NEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAE 120
            P  G G        N  RR  W+++ +  S+ + ++   S  G E  + + V  G G  
Sbjct: 66  SPSIGIGSSSPDTETNSSRRRTWTVFNTEGSQYSDRQESGSRSGAERSE-VSVNKGFG-- 125

Query: 121 DSLNEKTSESVRKVGLDDKL-TCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQS 180
                    SV K     +     ++ G + G KK KSKV WVCSDCG+S+GQWWG C+ 
Sbjct: 126 ---------SVEKARFGGRYGLASSDGGVVRGRKKGKSKVCWVCSDCGYSDGQWWGACRE 185

Query: 181 CRKVGTMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDW 224
           C KVGTMKQFS G    GGS            R+WLP+Q T V P+RLTDVNRGIN  +W
Sbjct: 186 CNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNW 236

[Close]
BLAST of MELO3C013012 vs. NCBI nr
Match: gi|147856591|emb|CAN82495.1| (hypothetical protein VITISV_033044 [Vitis vinifera])

HSP 1 Score: 139.8 bits (351), Expect = 5.8e-30
Identity = 90/239 (37.66%), Postives = 116/239 (48.54%), Query Frame = 1 

Query: 6   TIFYSRKHFLISSSFSSYKTSP-ISCRSSLSPNSSLFHYAPRFNTAHLSTDARNGDPLAG 65
           T FY+R+H L          SP IS +S  +PN S          +  ST      P  G
Sbjct: 5   TTFYTRRHLLSPKKHIPISPSPLISFQSHQNPNFSRHFRCTNHRRSEESTSLDADSPGIG 64

Query: 66  S------GPENEKRRNVWSLYGSVSSKLTTQRVGSSSDGKEPEQSLGVLNGDGAEDSLNE 125
           S      G  N  R   W+++ +  S+         SD +E E        + +E    +
Sbjct: 65  SCSSSPDGETNSSRPRTWTVFNTEGSQY--------SDIQESESKSAAERSEVSE----K 124

Query: 126 KTSESVRKVGLDDK-LTCKTNSGKLAGLKK-KSKVSWVCSDCGHSEGQWWGTCQSCRKVG 185
           +   SV K  L  + +   ++ G + G KK KSKV WVCSDCGHS+G WWG C+ C KVG
Sbjct: 125 RGYGSVGKARLGGRYVPASSDGGVVRGRKKGKSKVFWVCSDCGHSDGHWWGACRECNKVG 184

Query: 186 TMKQFSVGNDSEGGS------------RTWLPKQVTNVNPMRLTDVNRGINAQDWRLPL 224
           TMKQFS G    GGS            R+WLP+Q T   P RLTDVNRGIN  +WR+PL
Sbjct: 185 TMKQFSEGESGIGGSRASGFEVSENMVRSWLPQQPTETQPQRLTDVNRGINQLNWRIPL 231

The following BLAST results are available for this feature:
BLAST of MELO3C013012 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBL7_CUCSA3.7e-10080.72Uncharacterized protein OS=Cucumis sativus GN=Csa_3G434980 PE=4 SV=1[more]
F6HY77_VITVI4.3e-3237.70Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03190 PE=4 SV=... [more]
A5AQZ1_VITVI4.3e-3237.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033043 PE=4 SV=1[more]
A5AQZ2_VITVI4.0e-3037.66Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033044 PE=4 SV=1[more]
A0A166EM88_DAUCA8.4e-2834.91Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007591 PE=4 SV=1[more]
BLAST of MELO3C013012 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G50340.11.6e-2238.32 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidas... [more]
BLAST of MELO3C013012 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093501|ref|XP_008447567.1|1.5e-126100.00PREDICTED: uncharacterized protein LOC103489983 isoform X1 [Cucumis melo][more]
gi|778681263|ref|XP_011651479.1|5.3e-10080.72PREDICTED: uncharacterized protein LOC101217616 [Cucumis sativus][more]
gi|147856590|emb|CAN82494.1|6.2e-3237.70hypothetical protein VITISV_033043 [Vitis vinifera][more]
gi|731402242|ref|XP_002277638.2|6.2e-3237.70PREDICTED: uncharacterized protein LOC100258398 [Vitis vinifera][more]
gi|147856591|emb|CAN82495.1|5.8e-3037.66hypothetical protein VITISV_033044 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0008094 DNA-dependent ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013012T1MELO3C013012T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32472FAMILY NOT NAMEDcoord: 148..223
score: 2.5
NoneNo IPR availablePANTHERPTHR32472:SF10DNA REPAIR PROTEIN RADA-LIKE PROTEINcoord: 148..223
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013012Cucumber (Chinese Long) v3cucmeB068
MELO3C013012Cucumber (Chinese Long) v3cucmeB133
MELO3C013012Cucumber (Chinese Long) v3cucmeB220
MELO3C013012Cucumber (Chinese Long) v3cucmeB572
MELO3C013012Watermelon (97103) v2mewmbB325
MELO3C013012Watermelon (97103) v2mewmbB329
MELO3C013012Watermelon (97103) v2mewmbB344
MELO3C013012Watermelon (97103) v2mewmbB359
MELO3C013012Wax gourdmewgoB397
MELO3C013012Wax gourdmewgoB442
MELO3C013012Melon (DHL92) v3.5.1memeB086
MELO3C013012Melon (DHL92) v3.5.1memeB102
MELO3C013012Melon (DHL92) v3.5.1memeB136
MELO3C013012Cucumber (Gy14) v1cgymeB171
MELO3C013012Cucumber (Gy14) v1cgymeB482
MELO3C013012Cucumber (Gy14) v1cgymeB520
MELO3C013012Cucumber (Gy14) v1cgymeB582
MELO3C013012Cucurbita maxima (Rimu)cmameB073
MELO3C013012Cucurbita maxima (Rimu)cmameB125
MELO3C013012Cucurbita maxima (Rimu)cmameB230
MELO3C013012Cucurbita maxima (Rimu)cmameB332
MELO3C013012Cucurbita maxima (Rimu)cmameB427
MELO3C013012Cucurbita maxima (Rimu)cmameB840
MELO3C013012Cucurbita moschata (Rifu)cmomeB118
MELO3C013012Cucurbita moschata (Rifu)cmomeB216
MELO3C013012Cucurbita moschata (Rifu)cmomeB325
MELO3C013012Cucurbita moschata (Rifu)cmomeB417
MELO3C013012Cucurbita moschata (Rifu)cmomeB823
MELO3C013012Wild cucumber (PI 183967)cpimeB066
MELO3C013012Wild cucumber (PI 183967)cpimeB131
MELO3C013012Wild cucumber (PI 183967)cpimeB219
MELO3C013012Wild cucumber (PI 183967)cpimeB561
MELO3C013012Cucumber (Chinese Long) v2cumeB065
MELO3C013012Cucumber (Chinese Long) v2cumeB129
MELO3C013012Cucumber (Chinese Long) v2cumeB226
MELO3C013012Cucumber (Chinese Long) v2cumeB554
MELO3C013012Watermelon (Charleston Gray)mewcgB307
MELO3C013012Watermelon (Charleston Gray)mewcgB324
MELO3C013012Watermelon (Charleston Gray)mewcgB329
MELO3C013012Watermelon (Charleston Gray)mewcgB342
MELO3C013012Watermelon (97103) v1mewmB356
MELO3C013012Watermelon (97103) v1mewmB363
MELO3C013012Watermelon (97103) v1mewmB386
MELO3C013012Cucurbita pepo (Zucchini)cpemeB132
MELO3C013012Cucurbita pepo (Zucchini)cpemeB306
MELO3C013012Cucurbita pepo (Zucchini)cpemeB340
MELO3C013012Cucurbita pepo (Zucchini)cpemeB518
MELO3C013012Cucurbita pepo (Zucchini)cpemeB573
MELO3C013012Bottle gourd (USVL1VR-Ls)lsimeB110
MELO3C013012Bottle gourd (USVL1VR-Ls)lsimeB214
MELO3C013012Bottle gourd (USVL1VR-Ls)lsimeB411
MELO3C013012Bottle gourd (USVL1VR-Ls)lsimeB436
MELO3C013012Cucumber (Gy14) v2cgybmeB060
MELO3C013012Cucumber (Gy14) v2cgybmeB113
MELO3C013012Cucumber (Gy14) v2cgybmeB186
MELO3C013012Cucumber (Gy14) v2cgybmeB490
MELO3C013012Silver-seed gourdcarmeB0125
MELO3C013012Silver-seed gourdcarmeB0204
MELO3C013012Silver-seed gourdcarmeB0574
MELO3C013012Silver-seed gourdcarmeB0742
MELO3C013012Silver-seed gourdcarmeB0997