MELO3C012624.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012624.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOB domain-containing 4-like protein
Location	chr01 : 21531991 .. 21534727 (-)
Sequence length	684

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTAGCTGACTCATTTTTTCTTAATTTTGCCTTTTAATTTTCCCCCCAATACTTAAACAAAATTCACTTCTTTCTTTGAGTTTCAGTTTAATTCTTCATGTGGGTTTTACTCGCACAATATATTAGTACAGTTAATTAGCAAGCTAAGATCAATTTCAGAAGATAGTAATATTATTATAGTACTGATCATCAAATTAAATGGCATCGTCGGAGATGATGATGAGTGGGAGCTGCAAAAAGGGGAATGGTGCAGCCGCGCCGTGCGCTGCCTGCAAGCTTTTGCGGCGGCGGTGTGCTCACGACTGTGTGTTTGCTCCTTATTTTCCGGCGGATCATCCCCACAAATTCTCCAGTGTTCACAAAGTCTTTGGTGCTAGTAATGTCAGCAAATTGTTGCAGGTTCATTCCAATGATCTCCTTTCTCTCTTTTATTCTGAGTAGGACAAAAATGATTTTTAACTATTGGAAAATCACTTAATTTAACCCATCAAGAATACGAGGATATCCTCATTAATTACCCTAAAAATGGTATTGCGATCTCTACTCATTTTCTCCTATATATTGAAAATAACTATGTTAGAAAATTAGGGAAAGTTTTTTTAGTACTGCTGCAATATCTATTTTTCCACCTCTCTTCTCATCGGATTCTATATCATTTCTAGTGGGGTGAGAATTTAATGATAGGAGTAATATGTGAATTGTTTTATTGTATTGAAATTTTTTTTTTAAAAACGAGTGAGATAATTATCTAATGTGTAGTTAATATTGAATTATGATCCAATCCAATATTTGCGTTAGAGAGTTTAAATCATTAGTCATGAATTTTGAGAATTTTTTTTTCTTTTGTCTATTTTTGTGGCTACCTAAAACTATGTAATTAATTTCATTTTGGTATCTAATCTAATAGCTGCTAAATTTAAAATTTGTAAAAACTACTTCATCATGTAGATATTATACATCTAAATTTTATGCCTAATAGAATTCAACAGTTCTAACTTTTTTTTTTTTTTGTCTAGTCCCTAATTTAGGGGCTAAAATTTGAATTTTGGAAATTGAAGGATTAAGAAAACTTATAATTTAATATAAAATATAAATTGTTTTGGCCAACCCAGTATAACGTGTCTTTTAGTAATGGAGTTCTTTCTCTACTTTTAAAAAGCAAGAGAAGGCTATCTTTTGCAAATTCTTCTACATCTCACATGTAAGAAAGAAAAGGGTTTGTTTTAGGTGTCCGGATTAGAGACGAATAATTTAAAAGGATTGCATGTTAAATTTTAATAAATGTTAAAAAAGAAAAAAAAAAAATTGATGCTCTATTATGCTTGCTTATTCAGAGTGGAATTAATAAATCTATGTTTTTAGCTAGGTACTTTATCATTTTATTTGGTTTTTTTTTTTTTAATTTTGAAATGTTTTCTTTAAAAAAGAAAAAACAAACAAAATTGGTCTCAAACTTTTGGTCGTGTGGGAATTGTTACAAGTGAGCACTCCAATAAAATGTAATTTATTTGAATTTACACTTTTTTGTTGTTGTGTGTTGTGTTGTTGGTTTTGGCGTGGGGTTAATAGAATGATAGAGATGTTTCGTCTAATAGGTGTGGCGGGAAACTTTTAACAAATCTAATATATACTTTTTAATCACTAACTATTGGCGTAATGCTGACGTTTTAATCATTTCTACAGTGAATGGAGGCTTAAACGTCATGTCGTCCATCTTTTCCATCTCCCCAGCTACACCGACAACGCCCTTTTAACCTTCTTCGTTTTTTAAGTCCAAAGTTATATATAAATATACATATATAGAAACATTTTTATACCAATCATCCATGTTCTATTTATTTGTAGTTGCTTAAATAATTAATGACACCCTTCAAAAATAAATGAAAGTTAACTCGTCAACAAGCACTTTGGGTTTTAACCTCTCTTCTAACCCTAATCAGATGGCCATCTTCATTTTCCTTTACTCCATTGCAGTATTTCGTGGGAGAAGTACAACAACGTTGTTGAAGAGGGAAGAAAACTTAAATTATGATAGATGTGGCCATCCTATTAGGGATATATAACTATTTCTGTGGCCAGAGAGAGATTAACGGATATAATGTAATATATAAATGTGGTGAGTGCGCTTTGACGTAAATATAAGGTTAGTTATCATTTATCTTTTTAGGATGGGTCATTGATCATTGATCATTTGAGGGACATTTGTACAAAAATTTCTCAAAACAACCTTGTTCTCTTTTATGTATTATATATTTAGGTGTAATGGATAAGTAAGAGTATACGAGAATTTGAACCTCTCGTGTTTAGAAAATGAGGACATGTGAAGTTCTTCGTCTCAATAATTATTTGTTTATTTTATTTTTTTACTTTTCTAGAAGCCTTGAATTATAGTTTAGAGAGTTTCCAGAATTGATATATGACAATTTTGTGATGGGCATGTTGAATAATCCAGGAGTTGCCAGAGCAGCAACGGAGCGATGCAGTAAGTTCGATGGTATATGAGGCAAATGCAAGGATTCGAGATCCGGTGTACGGATGCGTGGGAACAATATCATGTCTACAACAGCAAGTGGATGCATTGCAGCAACAACTAGCAATAACACAGGCCCAACTGGTTCAATTGAAAATGGGGCAATTTACAACAACATCACAATCATCATCTAGTACAGATGACTTCCTTTCTCCTCCGCCCAATATCAATGTGGCCGCATCCTCATCATTATGGTCCTGCTAG

mRNA sequence

CTCTCTAGCTGACTCATTTTTTCTTAATTTTGCCTTTTAATTTTCCCCCCAATACTTAAACAAAATTCACTTCTTTCTTTGAGTTTCAGTTTAATTCTTCATGTGGGTTTTACTCGCACAATATATTAGTACAGTTAATTAGCAAGCTAAGATCAATTTCAGAAGATAGTAATATTATTATAGTACTGATCATCAAATTAAATGGCATCGTCGGAGATGATGATGAGTGGGAGCTGCAAAAAGGGGAATGGTGCAGCCGCGCCGTGCGCTGCCTGCAAGCTTTTGCGGCGGCGGTGTGCTCACGACTGTGTGTTTGCTCCTTATTTTCCGGCGGATCATCCCCACAAATTCTCCAGTGTTCACAAAGTCTTTGGTGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCAGCAACGGAGCGATGCAGTAAGTTCGATGGTATATGAGGCAAATGCAAGGATTCGAGATCCGGTGTACGGATGCGTGGGAACAATATCATGTCTACAACAGCAAGTGGATGCATTGCAGCAACAACTAGCAATAACACAGGCCCAACTGGTTCAATTGAAAATGGGGCAATTTACAACAACATCACAATCATCATCTAGTACAGATGACTTCCTTTCTCCTCCGCCCAATATCAATGTGGCCGCATCCTCATCATTATGGTCCTGCTAG

Coding sequence (CDS)

ATGGCATCGTCGGAGATGATGATGAGTGGGAGCTGCAAAAAGGGGAATGGTGCAGCCGCGCCGTGCGCTGCCTGCAAGCTTTTGCGGCGGCGGTGTGCTCACGACTGTGTGTTTGCTCCTTATTTTCCGGCGGATCATCCCCACAAATTCTCCAGTGTTCACAAAGTCTTTGGTGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCAGCAACGGAGCGATGCAGTAAGTTCGATGGTATATGAGGCAAATGCAAGGATTCGAGATCCGGTGTACGGATGCGTGGGAACAATATCATGTCTACAACAGCAAGTGGATGCATTGCAGCAACAACTAGCAATAACACAGGCCCAACTGGTTCAATTGAAAATGGGGCAATTTACAACAACATCACAATCATCATCTAGTACAGATGACTTCCTTTCTCCTCCGCCCAATATCAATGTGGCCGCATCCTCATCATTATGGTCCTGCTAG

Protein sequence

MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC

Homology

[Close]

BLAST of MELO3C012624.2.1 vs. NCBI nr
Match: XP_008447124.1 (PREDICTED: LOB domain-containing protein 4-like [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 1.2e-70
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60
           MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS
Sbjct: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60

Query: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120
           NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ
Sbjct: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120

Query: 121 LVQLKMGQFTXXXXXXXXXXXXXXXXXXINVAASSSLWSC 161
           LVQLKMGQFTXXXXXXXXXXXXXXXXXXINVAASSSLWSC
Sbjct: 121 LVQLKMGQFTXXXXXXXXXXXXXXXXXXINVAASSSLWSC 160

[Close]

BLAST of MELO3C012624.2.1 vs. NCBI nr
Match: XP_004139827.1 (PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus] >KGN44269.1 hypothetical protein Csa_7G237840 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 140/162 (86.42%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MASSEM--MMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG 60
           MASSEM             AAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG
Sbjct: 1   MASSEMXXXXXXXXXXXXXAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG 60

Query: 61  ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQ 120
           ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVG ISCLQQQVDALQQQLAITQ
Sbjct: 61  ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLAITQ 120

Query: 121 AQLVQLKMGQFTXXXXXXXXXXXXXXXXXXINVAASSSLWSC 161
           AQLVQ+KMGQFTXXXXXXXXXXXXXXXXXX       SLWSC
Sbjct: 121 AQLVQMKMGQFTXXXXXXXXXXXXXXXXXXXXXXXXXSLWSC 162

[Close]

BLAST of MELO3C012624.2.1 vs. NCBI nr
Match: XP_022930643.1 (LOB domain-containing protein 4-like [Cucurbita moschata])

HSP 1 Score: 212.6 bits (540), Expect = 9.7e-52
Identity = 106/124 (85.48%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 7   MMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLL 66
           MM GSCKK  GA +PCAACKLLRRRC  DCVFAPYFPAD PHKFSSVHKVFGASNV+KLL
Sbjct: 5   MMKGSCKK--GAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLL 64

Query: 67  QELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 126
           QELPEQ RSDAVSSMVYEANARIRDP+YGCVGTISCLQ+QVDALQQQLA+TQAQL+  KM
Sbjct: 65  QELPEQHRSDAVSSMVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKM 124

Query: 127 GQFT 131
            QF+
Sbjct: 125 AQFS 126

[Close]

BLAST of MELO3C012624.2.1 vs. NCBI nr
Match: XP_023531527.1 (LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 2.2e-51
Identity = 105/124 (84.68%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 7   MMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLL 66
           MM GSCKK  GA +PCAACKLLRRRC  DCVFAPYFPAD PHKFSSVHKVFGASNV+KLL
Sbjct: 5   MMKGSCKK--GAPSPCAACKLLRRRCTQDCVFAPYFPADQPHKFSSVHKVFGASNVTKLL 64

Query: 67  QELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 126
           QELPEQ RSDAVSS+VYEANARIRDP+YGCVGTISCLQ+QVDALQQQLA+TQAQL+  KM
Sbjct: 65  QELPEQHRSDAVSSLVYEANARIRDPIYGCVGTISCLQRQVDALQQQLAMTQAQLLHFKM 124

Query: 127 GQFT 131
            QF+
Sbjct: 125 AQFS 126

[Close]

BLAST of MELO3C012624.2.1 vs. NCBI nr
Match: XP_022969400.1 (LOB domain-containing protein 4-like [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47
Identity = 107/145 (73.79%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 17  GAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSD 76
           GAA PCAACKLLRRRCA  CVFAPYFPA HPHK SSVH+VFGASNVSKLLQEL E QRSD
Sbjct: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61

Query: 77  AVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQF-TXXXXX 136
           AVS MVYEANARIRD V GCVGTI+CLQ+QVDALQQ+LAITQAQL+QLKM QF +     
Sbjct: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSS 121

Query: 137 XXXXXXXXXXXXXINVAASSSLWSC 161
                        INV AS SLWSC
Sbjct: 122 VGNLLLPPLPNININVGASPSLWSC 146

[Close]

BLAST of MELO3C012624.2.1 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 178.7 bits (452), Expect = 2.8e-45
Identity = 89/123 (72.36%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 8   MSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQ 67
           M  S +K  GAA+PCAACKLLRRRCA DCVF+PYFPAD P KF++VH+VFGASNV+K+LQ
Sbjct: 1   MKESSRK-QGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 60

Query: 68  ELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMG 127
           ELP  QR DAVSSMVYEANAR+RDPVYGCVG IS LQQQ+D LQ QLA+ QA++V L++ 
Sbjct: 61  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 120

Query: 128 QFT 131
           Q T
Sbjct: 121 QST 122

[Close]

BLAST of MELO3C012624.2.1 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-41
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 15  GNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQR 74
           G   ++PCA+CKLLRRRCA DC+FAPYFP D PHKF+ VHKVFGASNVSK+LQELP  QR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 75  SDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 127
           +DAV+S+V+EANAR+RDPVYGCVG IS LQ QV  LQ QLA+ QA+++ ++M
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM 113

[Close]

BLAST of MELO3C012624.2.1 vs. TAIR10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 154.1 bits (388), Expect = 7.4e-38
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 20  APCAACKLLRRRCAHD-CVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAV 79
           +PCA CKLLRR+C  D CVFAPYFPA  P+KF+ VHK+FGASNV+K+LQEL E  RSDAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 80  SSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLK 126
            SMVYEANARI+DPVYGCVGTIS L +Q++ LQ QLA  QA+L+ ++
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of MELO3C012624.2.1 vs. TAIR10
Match: AT2G40470.1 (LOB domain-containing protein 15)

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-35
Identity = 74/125 (59.20%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60
           MA     MSG     N    PCAACKLLRRRCA +C F+PYF    PHKF+SVHKVFGAS
Sbjct: 26  MAGIRRPMSGPPGTLN-TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGAS 85

Query: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120
           NVSK+L E+PE QR+DA +S+VYEAN R+RDPVYGC+G IS LQQQV A   +L   +++
Sbjct: 86  NVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQAXXXELTAVRSE 145

Query: 121 LVQLK 126
           +++ K
Sbjct: 146 ILKYK 149

[Close]

BLAST of MELO3C012624.2.1 vs. TAIR10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 141.4 bits (355), Expect = 5.0e-34
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 16  NGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRS 75
           N   +PCAACK LRR+C   C+FAPYFP + PHKF++VHK+FGASNV+KLL EL   QR 
Sbjct: 6   NSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQRE 65

Query: 76  DAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQL 122
           DAV+S+ YEA AR+RDPVYGCVG IS LQ+QV  LQ++L    A L
Sbjct: 66  DAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

[Close]

BLAST of MELO3C012624.2.1 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.1e-44
Identity = 89/123 (72.36%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 8   MSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQ 67
           M  S +K  GAA+PCAACKLLRRRCA DCVF+PYFPAD P KF++VH+VFGASNV+K+LQ
Sbjct: 1   MKESSRK-QGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 60

Query: 68  ELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMG 127
           ELP  QR DAVSSMVYEANAR+RDPVYGCVG IS LQQQ+D LQ QLA+ QA++V L++ 
Sbjct: 61  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 120

Query: 128 QFT 131
           Q T
Sbjct: 121 QST 122

[Close]

BLAST of MELO3C012624.2.1 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 2.6e-40
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 15  GNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQR 74
           G   ++PCA+CKLLRRRCA DC+FAPYFP D PHKF+ VHKVFGASNVSK+LQELP  QR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 75  SDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKM 127
           +DAV+S+V+EANAR+RDPVYGCVG IS LQ QV  LQ QLA+ QA+++ ++M
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM 113

[Close]

BLAST of MELO3C012624.2.1 vs. Swiss-Prot
Match: sp|Q9SA51|LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-36
Identity = 74/107 (69.16%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 20  APCAACKLLRRRCAHD-CVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAV 79
           +PCA CKLLRR+C  D CVFAPYFPA  P+KF+ VHK+FGASNV+K+LQEL E  RSDAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 80  SSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLK 126
            SMVYEANARI+DPVYGCVGTIS L +Q++ LQ QLA  QA+L+ ++
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of MELO3C012624.2.1 vs. Swiss-Prot
Match: sp|Q8L5T5|LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-34
Identity = 74/125 (59.20%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60
           MA     MSG     N    PCAACKLLRRRCA +C F+PYF    PHKF+SVHKVFGAS
Sbjct: 26  MAGIRRPMSGPPGTLN-TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGAS 85

Query: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120
           NVSK+L E+PE QR+DA +S+VYEAN R+RDPVYGC+G IS LQQQV A   +L   +++
Sbjct: 86  NVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQAXXXELTAVRSE 145

Query: 121 LVQLK 126
           +++ K
Sbjct: 146 ILKYK 149

[Close]

BLAST of MELO3C012624.2.1 vs. Swiss-Prot
Match: sp|Q9FML4|LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 9.0e-33
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 16  NGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRS 75
           N   +PCAACK LRR+C   C+FAPYFP + PHKF++VHK+FGASNV+KLL EL   QR 
Sbjct: 6   NSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQRE 65

Query: 76  DAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQL 122
           DAV+S+ YEA AR+RDPVYGCVG IS LQ+QV  LQ++L    A L
Sbjct: 66  DAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

[Close]

BLAST of MELO3C012624.2.1 vs. TrEMBL
Match: tr|A0A1S3BGP4|A0A1S3BGP4_CUCME (LOB domain-containing protein 4-like OS=Cucumis melo OX=3656 GN=LOC103489649 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 8.1e-71
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60
           MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS
Sbjct: 1   MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGAS 60

Query: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120
           NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ
Sbjct: 61  NVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQ 120

Query: 121 LVQLKMGQFTXXXXXXXXXXXXXXXXXXINVAASSSLWSC 161
           LVQLKMGQFTXXXXXXXXXXXXXXXXXXINVAASSSLWSC
Sbjct: 121 LVQLKMGQFTXXXXXXXXXXXXXXXXXXINVAASSSLWSC 160

[Close]

BLAST of MELO3C012624.2.1 vs. TrEMBL
Match: tr|A0A0A0K5P4|A0A0A0K5P4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237840 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 7.3e-56
Identity = 140/162 (86.42%), Postives = 141/162 (87.04%), Query Frame = 0


Query: 1   MASSEM--MMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG 60
           MASSEM             AAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG
Sbjct: 1   MASSEMXXXXXXXXXXXXXAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFG 60

Query: 61  ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQ 120
           ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVG ISCLQQQVDALQQQLAITQ
Sbjct: 61  ASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLAITQ 120

Query: 121 AQLVQLKMGQFTXXXXXXXXXXXXXXXXXXINVAASSSLWSC 161
           AQLVQ+KMGQFTXXXXXXXXXXXXXXXXXX       SLWSC
Sbjct: 121 AQLVQMKMGQFTXXXXXXXXXXXXXXXXXXXXXXXXXSLWSC 162

[Close]

BLAST of MELO3C012624.2.1 vs. TrEMBL
Match: tr|A5BKW9|A5BKW9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0027g01120 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-47
Identity = 94/114 (82.46%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 17  GAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSD 76
           GA +PCAACKLLRRRCA DCVFAPYFPAD PHKF+SVHKVFGASNV+K+LQELPE QRSD
Sbjct: 9   GAVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSD 68

Query: 77  AVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQFT 131
           AVSSMVYEANAR+RDPVYGCVG IS LQQQ+DALQ QLA+ QA++VQ++M QFT
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRMNQFT 122

[Close]

BLAST of MELO3C012624.2.1 vs. TrEMBL
Match: tr|M5WHZ5|M5WHZ5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138200 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 4.0e-46
Identity = 93/114 (81.58%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 17  GAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSD 76
           GA +PCAACKLLRRRCA DCVFAPYFPAD P KF+SVHKVFGASNV+K+LQELPE QRSD
Sbjct: 9   GAMSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSD 68

Query: 77  AVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQFT 131
           AVSSMVYEANAR+RDPVYGCVG IS LQQQ+DALQ QLAI QA++V ++MGQF+
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAIAQAEVVHMRMGQFS 122

[Close]

BLAST of MELO3C012624.2.1 vs. TrEMBL
Match: tr|M1AGH3|M1AGH3_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102583601 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.2e-45
Identity = 92/114 (80.70%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 17  GAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSD 76
           GAA+PCAACKLLRRRCA DCVFAPYFPAD PHKF+SVHKVFGASNV+K+LQELPE QR D
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRGD 68

Query: 77  AVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQFT 131
           AVSSMVYEANAR+RDPVYGCVG IS LQQQ+D LQ QLAI QA++V ++M QF+
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDNLQSQLAIAQAEVVHMRMRQFS 122

The following BLAST results are available for this feature:

BLAST of MELO3C012624.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447124.1	1.2e-70	100.00	PREDICTED: LOB domain-containing protein 4-like [Cucumis melo]	[more]
XP_004139827.1	1.1e-55	86.42	PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus] >KGN44269.1 hy...	[more]
XP_022930643.1	9.7e-52	85.48	LOB domain-containing protein 4-like [Cucurbita moschata]	[more]
XP_023531527.1	2.2e-51	84.68	LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022969400.1	1.1e-47	73.79	LOB domain-containing protein 4-like [Cucurbita maxima]	[more]

BLAST of MELO3C012624.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31320.1	2.8e-45	72.36	LOB domain-containing protein 4	[more]
AT2G30130.1	1.4e-41	69.64	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	7.4e-38	69.16	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G40470.1	2.0e-35	59.20	LOB domain-containing protein 15	[more]
AT5G63090.2	5.0e-34	63.21	Lateral organ boundaries (LOB) domain family protein	[more]

BLAST of MELO3C012624.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SHE9\|LBD4_ARATH	5.1e-44	72.36	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|Q8LBW3\|LBD12_ARATH	2.6e-40	69.64	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q9SA51\|LBD3_ARATH	1.3e-36	69.16	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
sp\|Q8L5T5\|LBD15_ARATH	3.7e-34	59.20	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
sp\|Q9FML4\|LOB_ARATH	9.0e-33	63.21	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]

BLAST of MELO3C012624.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BGP4\|A0A1S3BGP4_CUCME	8.1e-71	100.00	LOB domain-containing protein 4-like OS=Cucumis melo OX=3656 GN=LOC103489649 PE=...	[more]
tr\|A0A0A0K5P4\|A0A0A0K5P4_CUCSA	7.3e-56	86.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237840 PE=4 SV=1	[more]
tr\|A5BKW9\|A5BKW9_VITVI	2.8e-47	82.46	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0027g01120 PE=4 SV=...	[more]
tr\|M5WHZ5\|M5WHZ5_PRUPE	4.0e-46	81.58	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138200 PE=4 SV=1	[more]
tr\|M1AGH3\|M1AGH3_SOLTU	1.2e-45	80.70	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102583601 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012624.2	MELO3C012624.2	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012624.2.1.five_prime_UTR.1	MELO3C012624.2.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012624.2.1.CDS.2	MELO3C012624.2.1.CDS.2	CDS
MELO3C012624.2.1.CDS.1	MELO3C012624.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012624.2.1.exon.2	MELO3C012624.2.1.exon.2	exon
MELO3C012624.2.1.exon.1	MELO3C012624.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012624.2.1	MELO3C012624.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 14..141
None	No IPR available	PANTHER	PTHR31301:SF7	LOB DOMAIN-CONTAINING PROTEIN 3-RELATED	coord: 14..141
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 21..118 e-value: 2.6E-43 score: 146.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 20..121 score: 26.917