MELO3C012617.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012617.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 21422459 .. 21422629 (+)
Sequence length	171

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGGAGAAGGCGCGGAGGCTGAAAATGCAAAAAAGTGGCGGTTGTTCAGATTGAATTCTGCTTTTGACAACCGCCGGCAAAGAGCTCAAGTGGATAAAAGCAGGGGCCACCCTCTTCCGCCGCCAACCTTGAATTGTCAACGCAATCAACAACAGGTGAATCTTTAA

mRNA sequence

ATGTACGGAGAAGGCGCGGAGGCTGAAAATGCAAAAAAGTGGCGGTTGTTCAGATTGAATTCTGCTTTTGACAACCGCCGGCAAAGAGCTCAAGTGGATAAAAGCAGGGGCCACCCTCTTCCGCCGCCAACCTTGAATTGTCAACGCAATCAACAACAGGTGAATCTTTAA

Coding sequence (CDS)

ATGTACGGAGAAGGCGCGGAGGCTGAAAATGCAAAAAAGTGGCGGTTGTTCAGATTGAATTCTGCTTTTGACAACCGCCGGCAAAGAGCTCAAGTGGATAAAAGCAGGGGCCACCCTCTTCCGCCGCCAACCTTGAATTGTCAACGCAATCAACAACAGGTGAATCTTTAA

Protein sequence

MYGEGAEAENAKKWRLFRLNSAFDNRRQRAQVDKSRGHPLPPPTLNCQRNQQQVNL

Homology

[Close]

BLAST of MELO3C012617.2.1 vs. NCBI nr
Match: KGN44275.1 (hypothetical protein Csa_7G237900 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 44/54 (81.48%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MYGEGAEAENAKKWRLFRLNSAFDNRRQRAQVD-KSRGHPLPPPTLNCQRNQQQ 54
          MYGE AEAENAKKWR FRLNS   NRRQ AQVD  SRGHPLP PTLNCQR+QQQ
Sbjct: 1  MYGEVAEAENAKKWRFFRLNSDSYNRRQSAQVDTNSRGHPLPSPTLNCQRHQQQ 54

[Close]

BLAST of MELO3C012617.2.1 vs. TrEMBL
Match: tr|A0A0A0K3J2|A0A0A0K3J2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237900 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-14
Identity = 44/54 (81.48%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MYGEGAEAENAKKWRLFRLNSAFDNRRQRAQVD-KSRGHPLPPPTLNCQRNQQQ 54
          MYGE AEAENAKKWR FRLNS   NRRQ AQVD  SRGHPLP PTLNCQR+QQQ
Sbjct: 1  MYGEVAEAENAKKWRFFRLNSDSYNRRQSAQVDTNSRGHPLPSPTLNCQRHQQQ 54

The following BLAST results are available for this feature:

BLAST of MELO3C012617.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44275.1	4.8e-14	81.48	hypothetical protein Csa_7G237900 [Cucumis sativus]	[more]

BLAST of MELO3C012617.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C012617.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C012617.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K3J2\|A0A0A0K3J2_CUCSA	3.2e-14	81.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012617.2	MELO3C012617.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012617.2.1.CDS.1	MELO3C012617.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012617.2.1.exon.1	MELO3C012617.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012617.2.1	MELO3C012617.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..56