MELO3C012617.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C012617.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr01 : 21422459 .. 21422629 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGGAGAAGGCGCGGAGGCTGAAAATGCAAAAAAGTGGCGGTTGTTCAGATTGAATTCTGCTTTTGACAACCGCCGGCAAAGAGCTCAAGTGGATAAAAGCAGGGGCCACCCTCTTCCGCCGCCAACCTTGAATTGTCAACGCAATCAACAACAGGTGAATCTTTAA

mRNA sequence

ATGTACGGAGAAGGCGCGGAGGCTGAAAATGCAAAAAAGTGGCGGTTGTTCAGATTGAATTCTGCTTTTGACAACCGCCGGCAAAGAGCTCAAGTGGATAAAAGCAGGGGCCACCCTCTTCCGCCGCCAACCTTGAATTGTCAACGCAATCAACAACAGGTGAATCTTTAA

Coding sequence (CDS)

ATGTACGGAGAAGGCGCGGAGGCTGAAAATGCAAAAAAGTGGCGGTTGTTCAGATTGAATTCTGCTTTTGACAACCGCCGGCAAAGAGCTCAAGTGGATAAAAGCAGGGGCCACCCTCTTCCGCCGCCAACCTTGAATTGTCAACGCAATCAACAACAGGTGAATCTTTAA

Protein sequence

MYGEGAEAENAKKWRLFRLNSAFDNRRQRAQVDKSRGHPLPPPTLNCQRNQQQVNL
Homology
[Close]
BLAST of MELO3C012617.2 vs. NCBI nr
Match: KGN44275.1 (hypothetical protein Csa_7G237900 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 4.8e-14
Identity = 44/54 (81.48%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MYGEGAEAENAKKWRLFRLNSAFDNRRQRAQVD-KSRGHPLPPPTLNCQRNQQQ 54
          MYGE AEAENAKKWR FRLNS   NRRQ AQVD  SRGHPLP PTLNCQR+QQQ
Sbjct: 1  MYGEVAEAENAKKWRFFRLNSDSYNRRQSAQVDTNSRGHPLPSPTLNCQRHQQQ 54

[Close]
BLAST of MELO3C012617.2 vs. TrEMBL
Match: tr|A0A0A0K3J2|A0A0A0K3J2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237900 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-14
Identity = 44/54 (81.48%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MYGEGAEAENAKKWRLFRLNSAFDNRRQRAQVD-KSRGHPLPPPTLNCQRNQQQ 54
          MYGE AEAENAKKWR FRLNS   NRRQ AQVD  SRGHPLP PTLNCQR+QQQ
Sbjct: 1  MYGEVAEAENAKKWRFFRLNSDSYNRRQSAQVDTNSRGHPLPSPTLNCQRHQQQ 54

The following BLAST results are available for this feature:
BLAST of MELO3C012617.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44275.14.8e-1481.48hypothetical protein Csa_7G237900 [Cucumis sativus][more]
BLAST of MELO3C012617.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C012617.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C012617.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K3J2|A0A0A0K3J2_CUCSA3.2e-1481.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G237900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012617.2.1MELO3C012617.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..56

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C012617.2Csa7G237900Cucumber (Chinese Long) v2cumedB512
MELO3C012617.2CsaV3_7G022800Cucumber (Chinese Long) v3cucmedB539
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C012617.2Silver-seed gourdcarmedB0350
MELO3C012617.2Silver-seed gourdcarmedB0398
MELO3C012617.2Silver-seed gourdcarmedB0542
MELO3C012617.2Cucumber (Chinese Long) v3cucmedB457
MELO3C012617.2Watermelon (97103) v2medwmbB172
MELO3C012617.2Watermelon (97103) v2medwmbB213
MELO3C012617.2Wax gourdmedwgoB214
MELO3C012617.2Wax gourdmedwgoB234
MELO3C012617.2Cucumber (Gy14) v2cgybmedB399
MELO3C012617.2Cucumber (Gy14) v2cgybmedB468
MELO3C012617.2Cucumber (Gy14) v1cgymedB179
MELO3C012617.2Cucumber (Gy14) v1cgymedB403
MELO3C012617.2Cucurbita maxima (Rimu)cmamedB109
MELO3C012617.2Cucurbita maxima (Rimu)cmamedB537
MELO3C012617.2Cucurbita maxima (Rimu)cmamedB592
MELO3C012617.2Cucurbita moschata (Rifu)cmomedB098
MELO3C012617.2Cucurbita moschata (Rifu)cmomedB524
MELO3C012617.2Cucurbita moschata (Rifu)cmomedB581
MELO3C012617.2Cucurbita pepo (Zucchini)cpemedB264
MELO3C012617.2Cucurbita pepo (Zucchini)cpemedB316
MELO3C012617.2Cucurbita pepo (Zucchini)cpemedB723
MELO3C012617.2Wild cucumber (PI 183967)cpimedB449
MELO3C012617.2Wild cucumber (PI 183967)cpimedB526
MELO3C012617.2Cucumber (Chinese Long) v2cumedB441
MELO3C012617.2Melon (DHL92) v3.6.1medmedB042
MELO3C012617.2Bottle gourd (USVL1VR-Ls)lsimedB066
MELO3C012617.2Bottle gourd (USVL1VR-Ls)lsimedB097
MELO3C012617.2Watermelon (Charleston Gray)medwcgB174
MELO3C012617.2Watermelon (Charleston Gray)medwcgB198
MELO3C012617.2Watermelon (97103) v1medwmB199
MELO3C012617.2Watermelon (97103) v1medwmB241