|
|
| Name | MELO3C010429.2.1 |
|---|
| Type | mRNA |
|---|
| Organism | Cucumis melo (Melon (DHL92) v3.6.1) |
|---|
| Description | Pentatricopeptide repeat-containing protein At4g35130, chloroplastic |
|---|
| Location | chr04 : 24085848 .. 24086424 (-) |
|---|
| Sequence length | 479 |
|---|
The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. AGATCGAACAACGCAAGACTTCGTGATGTAGTAGATGATCCACAACAAGTCCTTGATATGTGTAATAATAATGAGAGGTAGATGGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCTACCAATTCATAGGGGACGTGTTTGAGTGGAAGAAGTTGAACTCGATAAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCACGGTATGCTCACGGTATGCTCAAACTGGTTATGGTAGTCCGATGACAATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGATCGGTACAGGATATTATGATGCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGATCCATCAACTTCTTATATGCATGGACACGGACGTGGCTATGGAAAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGGATCGATGTCGACAACCAGCTCGAAATTGACGATGTTCGGGTTGTGGAACACATTGA mRNA sequence AGATCGAACAACGCAAGACTTCGTGATGTAGTAGATGATCCACAACAAGTCCTTGATATGTGTAATAATAATGAGAGGTAGATGGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCTACCAATTCATAGGGGACGTGTTTGAGTGGAAGAAGTTGAACTCGATAAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCACGGTATGCTCACGGGGTCGGTCCATCGTCTTCATACATGGATGTCGATCCATCAACTTCTTATATGCATGGACACGGACGTGGCTATGGAAAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGGATCGATGTCGACAACCAGCTCGAAATTGACGATGTTCGGGTTGTGGAACACATTGA Coding sequence (CDS) ATGATCCACAACAAGTCCTTGATATGTGTAATAATAATGAGAGGTAGATGGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCTACCAATTCATAGGGGACGTGTTTGAGTGGAAGAAGTTGAACTCGATAAAGTTTACCATAATGTGGAAGAAGTGCCTCCTACGACACAAACACAGAGCCACGGTATGCTCACGGGGTCGGTCCATCGTCTTCATACATGGATGTCGATCCATCAACTTCTTATATGCATGGACACGGACGTGGCTATGGAAAACATAA Protein sequence MIHNKSLICVIIMRGRWRRYIICTIYLLYLYQFIGDVFEWKKLNSIKFTIMWKKCLLRHKHRATVCSRGRSIVFIHGCRSINFLYAWTRTWLWKT
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
GO Assignments
This mRNA is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
| biological_process |
GO:0009451 |
RNA modification |
| cellular_component |
GO:0009507 |
chloroplast |
| cellular_component |
GO:0043231 |
intracellular membrane-bounded organelle |
| cellular_component |
GO:0009536 |
plastid |
| molecular_function |
GO:0004519 |
endonuclease activity |
| molecular_function |
GO:0003723 |
RNA binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C010429.2.1 | MELO3C010429.2.1-protein | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C010429.2.1.five_prime_UTR.1 | MELO3C010429.2.1.five_prime_UTR.1 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C010429.2.1.exon.2 | MELO3C010429.2.1.exon.2 | exon |
| MELO3C010429.2.1.exon.1 | MELO3C010429.2.1.exon.1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C010429.2.1.CDS.2 | MELO3C010429.2.1.CDS.2 | CDS |
| MELO3C010429.2.1.CDS.1 | MELO3C010429.2.1.CDS.1 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MELO3C010429.2.1.three_prime_UTR.1 | MELO3C010429.2.1.three_prime_UTR.1 | three_prime_UTR |
|
