MELO3C010218.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010218.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Cytochrome b
Location	chr02 : 15474264 .. 15474425 (+)
Sequence length	162

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTTTGGGGAACAACTGTAATTAAAATCTTAGTTAGCGTCATACCCGTAATAGGAGATACCATAGTGACTTGGCTTTGGGGTAGTTTCTCTGTGGACAATGCCACCTTAATTACTTTGAACCTGACCAATTTCCAAACTGATGTGCATGGCTTTGGG

mRNA sequence

ATGAGCCTTTGGGGAACAACTGTAATTAAAATCTTAGTTAGCGTCATACCCGTAATAGGAGATACCATAGTGACTTGGCTTTGGGGTAGTTTCTCTGTGGACAATGCCACCTTAATTACTTTGAACCTGACCAATTTCCAAACTGATGTGCATGGCTTTGGG

Coding sequence (CDS)

ATGAGCCTTTGGGGAACAACTGTAATTAAAATCTTAGTTAGCGTCATACCCGTAATAGGAGATACCATAGTGACTTGGCTTTGGGGTAGTTTCTCTGTGGACAATGCCACCTTAATTACTTTGAACCTGACCAATTTCCAAACTGATGTGCATGGCTTTGGG

Protein sequence

MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATLITLNLTNFQTDVHGFG

Homology

[Close]

BLAST of MELO3C010218.2.1 vs. NCBI nr
Match: AFA35881.1 (apocytochrome b, partial (mitochondrion) [Eriospermum parvifolium])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 134 MSLWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 171

[Close]

BLAST of MELO3C010218.2.1 vs. NCBI nr
Match: YP_009511948.1 (apocytochrome b (mitochondrion) [Melanthalia intermedia] >AXI97875.1 apocytochrome b (mitochondrion) [Melanthalia intermedia])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  LVS IPVIGD+IVTWLWG FSVDNATL
Sbjct: 138 MSLWGATVITNLVSAIPVIGDSIVTWLWGGFSVDNATL 175

[Close]

BLAST of MELO3C010218.2.1 vs. NCBI nr
Match: CAA84545.1 (apocytochrome b [Helianthus petiolaris])

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-08
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI+ L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVIRSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]

BLAST of MELO3C010218.2.1 vs. NCBI nr
Match: AMX21827.1 (cytochrome b, partial (mitochondrion) [Coelothrix irregularis])

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-08
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  LVS +PVIGD+IVTWLWG FSVDNATL
Sbjct: 116 MSLWGATVITNLVSAVPVIGDSIVTWLWGGFSVDNATL 153

[Close]

BLAST of MELO3C010218.2.1 vs. NCBI nr
Match: RDY13475.1 (cytochrome b, partial [Mucuna pruriens])

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-08
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATLITLNLTNFQTDVHGFG 55
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL   +L +    +H +G
Sbjct: 101 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRASLLHLAA-LHQYG 153

[Close]

BLAST of MELO3C010218.2.1 vs. TAIR10
Match: AT2G07727.1 (Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-11
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]

BLAST of MELO3C010218.2.1 vs. TAIR10
Match: ATMG00220.1 (apocytochrome b)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-11
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]

BLAST of MELO3C010218.2.1 vs. Swiss-Prot
Match: sp|P42792|CYB_ARATH (Cytochrome b OS=Arabidopsis thaliana OX=3702 GN=MT-CYB PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]

BLAST of MELO3C010218.2.1 vs. Swiss-Prot
Match: sp|P04165|CYB_MAIZE (Cytochrome b OS=Zea mays OX=4577 GN=MT-CYB PE=3 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]

BLAST of MELO3C010218.2.1 vs. Swiss-Prot
Match: sp|P26852|CYB_MARPO (Cytochrome b OS=Marchantia polymorpha OX=3197 GN=MT-CYB PE=3 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 142 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 179

[Close]

BLAST of MELO3C010218.2.1 vs. Swiss-Prot
Match: sp|P09843|CYB_OENBE (Cytochrome b OS=Oenothera berteroana OX=3950 GN=MT-CYB PE=2 SV=4)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 146 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 183

[Close]

BLAST of MELO3C010218.2.1 vs. Swiss-Prot
Match: sp|P0C523|CYB_ORYSI (Cytochrome b OS=Oryza sativa subsp. indica OX=39946 GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]

BLAST of MELO3C010218.2.1 vs. TrEMBL
Match: tr|I1TJ62|I1TJ62_9ASPA (Cytochrome b (Fragment) OS=Eriospermum parvifolium OX=928056 GN=cob PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-08
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 134 MSLWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 171

[Close]

BLAST of MELO3C010218.2.1 vs. TrEMBL
Match: tr|A0A165B865|A0A165B865_9FLOR (Cytochrome b (Fragment) OS=Coelothrix irregularis OX=479265 GN=CYTB PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-08
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  LVS +PVIGD+IVTWLWG FSVDNATL
Sbjct: 116 MSLWGATVITNLVSAVPVIGDSIVTWLWGGFSVDNATL 153

[Close]

BLAST of MELO3C010218.2.1 vs. TrEMBL
Match: tr|Q39983|Q39983_HELPE (Apocytochrome b OS=Helianthus petiolaris OX=4234 GN=cob PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-08
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI+ L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVIRSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]

BLAST of MELO3C010218.2.1 vs. TrEMBL
Match: tr|A0A0E0JZI4|A0A0E0JZI4_ORYPU (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-08
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATLITLNLTNFQTDVHGFG 55
          MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL   +L +    +H +G
Sbjct: 44 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRASLLHLAA-LHQYG 96

[Close]

BLAST of MELO3C010218.2.1 vs. TrEMBL
Match: tr|A0A1D8X7M3|A0A1D8X7M3_9FLOR (Cytochrome b OS=Pterocladiella media OX=1911541 GN=cob PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-08
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  LVS IP++GD+IVTWLWG FSVDNATL
Sbjct: 138 MSLWGATVITNLVSAIPIVGDSIVTWLWGGFSVDNATL 175

The following BLAST results are available for this feature:

BLAST of MELO3C010218.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
AFA35881.1	5.0e-08	81.58	apocytochrome b, partial (mitochondrion) [Eriospermum parvifolium]	[more]
YP_009511948.1	5.0e-08	84.21	apocytochrome b (mitochondrion) [Melanthalia intermedia] >AXI97875.1 apocytochro...	[more]
CAA84545.1	6.5e-08	78.95	apocytochrome b [Helianthus petiolaris]	[more]
AMX21827.1	6.5e-08	81.58	cytochrome b, partial (mitochondrion) [Coelothrix irregularis]	[more]
RDY13475.1	6.5e-08	61.11	cytochrome b, partial [Mucuna pruriens]	[more]

BLAST of MELO3C010218.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07727.1	2.6e-11	78.95	Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal	[more]
ATMG00220.1	2.6e-11	78.95	apocytochrome b	[more]

BLAST of MELO3C010218.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P42792\|CYB_ARATH	4.7e-10	78.95	Cytochrome b OS=Arabidopsis thaliana OX=3702 GN=MT-CYB PE=2 SV=2	[more]
sp\|P04165\|CYB_MAIZE	4.7e-10	78.95	Cytochrome b OS=Zea mays OX=4577 GN=MT-CYB PE=3 SV=2	[more]
sp\|P26852\|CYB_MARPO	4.7e-10	78.95	Cytochrome b OS=Marchantia polymorpha OX=3197 GN=MT-CYB PE=3 SV=2	[more]
sp\|P09843\|CYB_OENBE	4.7e-10	78.95	Cytochrome b OS=Oenothera berteroana OX=3950 GN=MT-CYB PE=2 SV=4	[more]
sp\|P0C523\|CYB_ORYSI	4.7e-10	78.95	Cytochrome b OS=Oryza sativa subsp. indica OX=39946 GN=MT-CYB PE=3 SV=1	[more]

BLAST of MELO3C010218.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|I1TJ62\|I1TJ62_9ASPA	3.3e-08	81.58	Cytochrome b (Fragment) OS=Eriospermum parvifolium OX=928056 GN=cob PE=3 SV=1	[more]
tr\|A0A165B865\|A0A165B865_9FLOR	4.3e-08	81.58	Cytochrome b (Fragment) OS=Coelothrix irregularis OX=479265 GN=CYTB PE=3 SV=1	[more]
tr\|Q39983\|Q39983_HELPE	4.3e-08	78.95	Apocytochrome b OS=Helianthus petiolaris OX=4234 GN=cob PE=4 SV=1	[more]
tr\|A0A0E0JZI4\|A0A0E0JZI4_ORYPU	4.3e-08	61.11	Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1	[more]
tr\|A0A1D8X7M3\|A0A1D8X7M3_9FLOR	5.6e-08	78.95	Cytochrome b OS=Pterocladiella media OX=1911541 GN=cob PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0022904	respiratory electron transport chain

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR016174	Di-haem_cyt_TM
IPR005797	Cyt_b/b6_N
IPR027387	Cytb/b6-like_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
biological_process	GO:1902600	hydrogen ion transmembrane transport
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0045275	respiratory chain complex III
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008121	ubiquinol-cytochrome-c reductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C010218.2	MELO3C010218.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C010218.2.1.CDS.1	MELO3C010218.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C010218.2.1.exon.1	MELO3C010218.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C010218.2.1	MELO3C010218.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027387	Cytochrome b/b6-like domain superfamily	GENE3D	G3DSA:1.20.810.10		coord: 1..44 e-value: 1.6E-9 score: 38.8
IPR005797	Cytochrome b/b6, N-terminal	PFAM	PF00033	Cytochrome_B	coord: 1..41 e-value: 8.5E-13 score: 48.4
IPR016174	Di-haem cytochrome, transmembrane	SUPERFAMILY	SSF81342	Transmembrane di-heme cytochromes	coord: 1..44