MELO3C010218.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C010218.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCytochrome b
Locationchr02 : 15474264 .. 15474425 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCTTTGGGGAACAACTGTAATTAAAATCTTAGTTAGCGTCATACCCGTAATAGGAGATACCATAGTGACTTGGCTTTGGGGTAGTTTCTCTGTGGACAATGCCACCTTAATTACTTTGAACCTGACCAATTTCCAAACTGATGTGCATGGCTTTGGG

mRNA sequence

ATGAGCCTTTGGGGAACAACTGTAATTAAAATCTTAGTTAGCGTCATACCCGTAATAGGAGATACCATAGTGACTTGGCTTTGGGGTAGTTTCTCTGTGGACAATGCCACCTTAATTACTTTGAACCTGACCAATTTCCAAACTGATGTGCATGGCTTTGGG

Coding sequence (CDS)

ATGAGCCTTTGGGGAACAACTGTAATTAAAATCTTAGTTAGCGTCATACCCGTAATAGGAGATACCATAGTGACTTGGCTTTGGGGTAGTTTCTCTGTGGACAATGCCACCTTAATTACTTTGAACCTGACCAATTTCCAAACTGATGTGCATGGCTTTGGG

Protein sequence

MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATLITLNLTNFQTDVHGFG
Homology
[Close]
BLAST of MELO3C010218.2 vs. NCBI nr
Match: AFA35881.1 (apocytochrome b, partial (mitochondrion) [Eriospermum parvifolium])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 134 MSLWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 171

[Close]
BLAST of MELO3C010218.2 vs. NCBI nr
Match: YP_009511948.1 (apocytochrome b (mitochondrion) [Melanthalia intermedia] >AXI97875.1 apocytochrome b (mitochondrion) [Melanthalia intermedia])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  LVS IPVIGD+IVTWLWG FSVDNATL
Sbjct: 138 MSLWGATVITNLVSAIPVIGDSIVTWLWGGFSVDNATL 175

[Close]
BLAST of MELO3C010218.2 vs. NCBI nr
Match: CAA84545.1 (apocytochrome b [Helianthus petiolaris])

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-08
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI+ L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVIRSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]
BLAST of MELO3C010218.2 vs. NCBI nr
Match: AMX21827.1 (cytochrome b, partial (mitochondrion) [Coelothrix irregularis])

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-08
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  LVS +PVIGD+IVTWLWG FSVDNATL
Sbjct: 116 MSLWGATVITNLVSAVPVIGDSIVTWLWGGFSVDNATL 153

[Close]
BLAST of MELO3C010218.2 vs. NCBI nr
Match: RDY13475.1 (cytochrome b, partial [Mucuna pruriens])

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-08
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATLITLNLTNFQTDVHGFG 55
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL   +L +    +H +G
Sbjct: 101 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRASLLHLAA-LHQYG 153

[Close]
BLAST of MELO3C010218.2 vs. TAIR10
Match: AT2G07727.1 (Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-11
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]
BLAST of MELO3C010218.2 vs. TAIR10
Match: ATMG00220.1 (apocytochrome b)

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-11
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]
BLAST of MELO3C010218.2 vs. Swiss-Prot
Match: sp|P42792|CYB_ARATH (Cytochrome b OS=Arabidopsis thaliana OX=3702 GN=MT-CYB PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]
BLAST of MELO3C010218.2 vs. Swiss-Prot
Match: sp|P04165|CYB_MAIZE (Cytochrome b OS=Zea mays OX=4577 GN=MT-CYB PE=3 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]
BLAST of MELO3C010218.2 vs. Swiss-Prot
Match: sp|P26852|CYB_MARPO (Cytochrome b OS=Marchantia polymorpha OX=3197 GN=MT-CYB PE=3 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 142 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 179

[Close]
BLAST of MELO3C010218.2 vs. Swiss-Prot
Match: sp|P09843|CYB_OENBE (Cytochrome b OS=Oenothera berteroana OX=3950 GN=MT-CYB PE=2 SV=4)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 146 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 183

[Close]
BLAST of MELO3C010218.2 vs. Swiss-Prot
Match: sp|P0C523|CYB_ORYSI (Cytochrome b OS=Oryza sativa subsp. indica OX=39946 GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.7e-10
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]
BLAST of MELO3C010218.2 vs. TrEMBL
Match: tr|I1TJ62|I1TJ62_9ASPA (Cytochrome b (Fragment) OS=Eriospermum parvifolium OX=928056 GN=cob PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-08
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 134 MSLWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 171

[Close]
BLAST of MELO3C010218.2 vs. TrEMBL
Match: tr|A0A165B865|A0A165B865_9FLOR (Cytochrome b (Fragment) OS=Coelothrix irregularis OX=479265 GN=CYTB PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-08
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  LVS +PVIGD+IVTWLWG FSVDNATL
Sbjct: 116 MSLWGATVITNLVSAVPVIGDSIVTWLWGGFSVDNATL 153

[Close]
BLAST of MELO3C010218.2 vs. TrEMBL
Match: tr|Q39983|Q39983_HELPE (Apocytochrome b OS=Helianthus petiolaris OX=4234 GN=cob PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-08
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MS WG TVI+ L S IPV+GDTIVTWLWG FSVDNATL
Sbjct: 145 MSFWGATVIRSLASAIPVVGDTIVTWLWGGFSVDNATL 182

[Close]
BLAST of MELO3C010218.2 vs. TrEMBL
Match: tr|A0A0E0JZI4|A0A0E0JZI4_ORYPU (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-08
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 1  MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATLITLNLTNFQTDVHGFG 55
          MS WG TVI  L S IPV+GDTIVTWLWG FSVDNATL   +L +    +H +G
Sbjct: 44 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRASLLHLAA-LHQYG 96

[Close]
BLAST of MELO3C010218.2 vs. TrEMBL
Match: tr|A0A1D8X7M3|A0A1D8X7M3_9FLOR (Cytochrome b OS=Pterocladiella media OX=1911541 GN=cob PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-08
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 1   MSLWGTTVIKILVSVIPVIGDTIVTWLWGSFSVDNATL 39
           MSLWG TVI  LVS IP++GD+IVTWLWG FSVDNATL
Sbjct: 138 MSLWGATVITNLVSAIPIVGDSIVTWLWGGFSVDNATL 175

The following BLAST results are available for this feature:
BLAST of MELO3C010218.2 vs. NCBI nr
Match NameE-valueIdentityDescription
AFA35881.15.0e-0881.58apocytochrome b, partial (mitochondrion) [Eriospermum parvifolium][more]
YP_009511948.15.0e-0884.21apocytochrome b (mitochondrion) [Melanthalia intermedia] >AXI97875.1 apocytochro... [more]
CAA84545.16.5e-0878.95apocytochrome b [Helianthus petiolaris][more]
AMX21827.16.5e-0881.58cytochrome b, partial (mitochondrion) [Coelothrix irregularis][more]
RDY13475.16.5e-0861.11cytochrome b, partial [Mucuna pruriens][more]
BLAST of MELO3C010218.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07727.12.6e-1178.95Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal[more]
ATMG00220.12.6e-1178.95apocytochrome b[more]
BLAST of MELO3C010218.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P42792|CYB_ARATH4.7e-1078.95Cytochrome b OS=Arabidopsis thaliana OX=3702 GN=MT-CYB PE=2 SV=2[more]
sp|P04165|CYB_MAIZE4.7e-1078.95Cytochrome b OS=Zea mays OX=4577 GN=MT-CYB PE=3 SV=2[more]
sp|P26852|CYB_MARPO4.7e-1078.95Cytochrome b OS=Marchantia polymorpha OX=3197 GN=MT-CYB PE=3 SV=2[more]
sp|P09843|CYB_OENBE4.7e-1078.95Cytochrome b OS=Oenothera berteroana OX=3950 GN=MT-CYB PE=2 SV=4[more]
sp|P0C523|CYB_ORYSI4.7e-1078.95Cytochrome b OS=Oryza sativa subsp. indica OX=39946 GN=MT-CYB PE=3 SV=1[more]
BLAST of MELO3C010218.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|I1TJ62|I1TJ62_9ASPA3.3e-0881.58Cytochrome b (Fragment) OS=Eriospermum parvifolium OX=928056 GN=cob PE=3 SV=1[more]
tr|A0A165B865|A0A165B865_9FLOR4.3e-0881.58Cytochrome b (Fragment) OS=Coelothrix irregularis OX=479265 GN=CYTB PE=3 SV=1[more]
tr|Q39983|Q39983_HELPE4.3e-0878.95Apocytochrome b OS=Helianthus petiolaris OX=4234 GN=cob PE=4 SV=1[more]
tr|A0A0E0JZI4|A0A0E0JZI4_ORYPU4.3e-0861.11Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1[more]
tr|A0A1D8X7M3|A0A1D8X7M3_9FLOR5.6e-0878.95Cytochrome b OS=Pterocladiella media OX=1911541 GN=cob PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0009055electron carrier activity
Vocabulary: INTERPRO
TermDefinition
IPR016174Di-haem_cyt_TM
IPR005797Cyt_b/b6_N
IPR027387Cytb/b6-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0070469 respiratory chain
cellular_component GO:0045275 respiratory chain complex III
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008121 ubiquinol-cytochrome-c reductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010218.2.1MELO3C010218.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027387Cytochrome b/b6-like domain superfamilyGENE3DG3DSA:1.20.810.10coord: 1..44
e-value: 1.6E-9
score: 38.8
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 1..41
e-value: 8.5E-13
score: 48.4
IPR016174Di-haem cytochrome, transmembraneSUPERFAMILYSSF81342Transmembrane di-heme cytochromescoord: 1..44

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010218.2Watermelon (97103) v2medwmbB244
MELO3C010218.2Watermelon (97103) v2medwmbB251
MELO3C010218.2Wax gourdmedwgoB290
MELO3C010218.2Cucumber (Gy14) v2cgybmedB045
MELO3C010218.2Cucumber (Gy14) v1cgymedB448
MELO3C010218.2Cucurbita maxima (Rimu)cmamedB060
MELO3C010218.2Cucurbita maxima (Rimu)cmamedB112
MELO3C010218.2Cucurbita maxima (Rimu)cmamedB470
MELO3C010218.2Cucurbita moschata (Rifu)cmomedB052
MELO3C010218.2Cucurbita moschata (Rifu)cmomedB105
MELO3C010218.2Cucurbita pepo (Zucchini)cpemedB392
MELO3C010218.2Cucurbita pepo (Zucchini)cpemedB603
MELO3C010218.2Cucurbita pepo (Zucchini)cpemedB734
MELO3C010218.2Wild cucumber (PI 183967)cpimedB051
MELO3C010218.2Wild cucumber (PI 183967)cpimedB275
MELO3C010218.2Cucumber (Chinese Long) v2cumedB053
MELO3C010218.2Cucumber (Chinese Long) v2cumedB274
MELO3C010218.2Melon (DHL92) v3.6.1medmedB115
MELO3C010218.2Bottle gourd (USVL1VR-Ls)lsimedB423
MELO3C010218.2Bottle gourd (USVL1VR-Ls)lsimedB426
MELO3C010218.2Watermelon (Charleston Gray)medwcgB245
MELO3C010218.2Watermelon (Charleston Gray)medwcgB249
MELO3C010218.2Watermelon (97103) v1medwmB270
MELO3C010218.2Watermelon (97103) v1medwmB288
MELO3C010218.2Silver-seed gourdcarmedB0135
MELO3C010218.2Silver-seed gourdcarmedB0515
MELO3C010218.2Cucumber (Chinese Long) v3cucmedB052
MELO3C010218.2Cucumber (Chinese Long) v3cucmedB278