MELO3C010039T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C010039T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionReceptor-type tyrosine-protein phosphatase gamma
Locationchr2 : 11593488 .. 11593751 (+)
Sequence length264
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCATTAACTCCACCTAGGCCTTCGGCCATTCTTATCCATCCTTCTGGCAGAGTCGTTCAAATGAGGCCTTCTGGCTCTCCTTCTTCCAATAAGGAGTCATCTACTCCTCCTCCTACAACTTATTCTCAGGCTGTCACTCCCAAAAAATGGTTCGTGTCCAGACTCGAGATCAAAACTTATTTTCAAAAATCGATCGCGGTCTACGATCCTATTATAGAATCTGAATATCAAAGTCTTAGTTTAGATGAGATAGTTTAA

mRNA sequence

ATGGAGTCATTAACTCCACCTAGGCCTTCGGCCATTCTTATCCATCCTTCTGGCAGAGTCGTTCAAATGAGGCCTTCTGGCTCTCCTTCTTCCAATAAGGAGTCATCTACTCCTCCTCCTACAACTTATTCTCAGGCTGTCACTCCCAAAAAATGGTTCGTGTCCAGACTCGAGATCAAAACTTATTTTCAAAAATCGATCGCGGTCTACGATCCTATTATAGAATCTGAATATCAAAGTCTTAGTTTAGATGAGATAGTTTAA

Coding sequence (CDS)

ATGGAGTCATTAACTCCACCTAGGCCTTCGGCCATTCTTATCCATCCTTCTGGCAGAGTCGTTCAAATGAGGCCTTCTGGCTCTCCTTCTTCCAATAAGGAGTCATCTACTCCTCCTCCTACAACTTATTCTCAGGCTGTCACTCCCAAAAAATGGTTCGTGTCCAGACTCGAGATCAAAACTTATTTTCAAAAATCGATCGCGGTCTACGATCCTATTATAGAATCTGAATATCAAAGTCTTAGTTTAGATGAGATAGTTTAA

Protein sequence

MESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYSQAVTPKKWFVSRLEIKTYFQKSIAVYDPIIESEYQSLSLDEIV*
Homology
[Close]
BLAST of MELO3C010039T1 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYSQAVTPKKWFVSRLEIKT 61
           ES TPPRPS  LI PSG V+QMRP  SPSSN+ESSTPP TTYSQAVT  K FV R EIK+
Sbjct: 64  ESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPP-TTYSQAVTLDKRFVPRPEIKS 123

Query: 62  YFQKSIAVYDPIIESEYQSLSLDEIV 88
           YFQKSI VYDPIIE EYQSL+L+E+V
Sbjct: 124 YFQKSIVVYDPIIEPEYQSLTLEEMV 148

[Close]
BLAST of MELO3C010039T1 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYS 45
           ES TPPRPS  LI PSG V+Q RPS S  SN++SS PPPTTYS
Sbjct: 67  ESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSS-PPPTTYS 108

[Close]
BLAST of MELO3C010039T1 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYSQAVTPKKWFVSRLEIKT 61
           ES TPPRPS  LI PSG V+QMRP  SPSSN+ESSTPP TTYSQAVT  K FV R EIK+
Sbjct: 64  ESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPP-TTYSQAVTLDKRFVPRPEIKS 123

Query: 62  YFQKSIAVYDPIIESEYQSLSLDEIV 88
           YFQKSI VYDPIIE EYQSL+L+E+V
Sbjct: 124 YFQKSIVVYDPIIEPEYQSLTLEEMV 148

[Close]
BLAST of MELO3C010039T1 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-21
Identity = 58/81 (71.60%), Postives = 64/81 (79.01%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYSQAVTPKKWFVSRLEIKT 61
           ES TPPRPSA LI  S  VVQMRP  SPSSN+ESSTPP TTYS  VTP K FV R +IK+
Sbjct: 64  ESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPP-TTYSHTVTPDKRFVPRPKIKS 123

Query: 62  YFQKSIAVYDPIIESEYQSLS 83
           YFQKSI VYDPIIE +YQ+L+
Sbjct: 124 YFQKSIVVYDPIIEPKYQTLA 143

[Close]
BLAST of MELO3C010039T1 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYS 45
           ES TPPRPS  LI PSG V+Q RPS S  SN++SS PPPTTYS
Sbjct: 67  ESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSS-PPPTTYS 108

The following BLAST results are available for this feature:
BLAST of MELO3C010039T1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCE6_CUCME1.2e-2575.58Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA1.6e-0669.77Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of MELO3C010039T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136323|gb|ADN34145.1|1.7e-2575.58hypothetical protein [Cucumis melo subsp. melo][more]
gi|659098578|ref|XP_008450208.1|4.3e-2171.60PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|700189415|gb|KGN44648.1|2.3e-0669.77hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C010039MELO3C010039gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C010039T1MELO3C010039T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C010039T1.cds1MELO3C010039T1.cds1CDS