MELO3C010039 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010039
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionReceptor-type tyrosine-protein phosphatase gamma
Locationchr2 : 11593488 .. 11593751 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCATTAACTCCACCTAGGCCTTCGGCCATTCTTATCCATCCTTCTGGCAGAGTCGTTCAAATGAGGCCTTCTGGCTCTCCTTCTTCCAATAAGGAGTCATCTACTCCTCCTCCTACAACTTATTCTCAGGCTGTCACTCCCAAAAAATGGTTCGTGTCCAGACTCGAGATCAAAACTTATTTTCAAAAATCGATCGCGGTCTACGATCCTATTATAGAATCTGAATATCAAAGTCTTAGTTTAGATGAGATAGTTTAA

mRNA sequence

ATGGAGTCATTAACTCCACCTAGGCCTTCGGCCATTCTTATCCATCCTTCTGGCAGAGTCGTTCAAATGAGGCCTTCTGGCTCTCCTTCTTCCAATAAGGAGTCATCTACTCCTCCTCCTACAACTTATTCTCAGGCTGTCACTCCCAAAAAATGGTTCGTGTCCAGACTCGAGATCAAAACTTATTTTCAAAAATCGATCGCGGTCTACGATCCTATTATAGAATCTGAATATCAAAGTCTTAGTTTAGATGAGATAGTTTAA

Coding sequence (CDS)

ATGGAGTCATTAACTCCACCTAGGCCTTCGGCCATTCTTATCCATCCTTCTGGCAGAGTCGTTCAAATGAGGCCTTCTGGCTCTCCTTCTTCCAATAAGGAGTCATCTACTCCTCCTCCTACAACTTATTCTCAGGCTGTCACTCCCAAAAAATGGTTCGTGTCCAGACTCGAGATCAAAACTTATTTTCAAAAATCGATCGCGGTCTACGATCCTATTATAGAATCTGAATATCAAAGTCTTAGTTTAGATGAGATAGTTTAA

Protein sequence

MESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYSQAVTPKKWFVSRLEIKTYFQKSIAVYDPIIESEYQSLSLDEIV*
Homology
[Close]
BLAST of MELO3C010039 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYSQAVTPKKWFVSRLEIKT 61
           ES TPPRPS  LI PSG V+QMRP  SPSSN+ESSTPP TTYSQAVT  K FV R EIK+
Sbjct: 64  ESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPP-TTYSQAVTLDKRFVPRPEIKS 123

Query: 62  YFQKSIAVYDPIIESEYQSLSLDEIV 88
           YFQKSI VYDPIIE EYQSL+L+E+V
Sbjct: 124 YFQKSIVVYDPIIEPEYQSLTLEEMV 148

[Close]
BLAST of MELO3C010039 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYS 45
           ES TPPRPS  LI PSG V+Q RPS S  SN++SS PPPTTYS
Sbjct: 67  ESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSS-PPPTTYS 108

[Close]
BLAST of MELO3C010039 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 65/86 (75.58%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYSQAVTPKKWFVSRLEIKT 61
           ES TPPRPS  LI PSG V+QMRP  SPSSN+ESSTPP TTYSQAVT  K FV R EIK+
Sbjct: 64  ESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPP-TTYSQAVTLDKRFVPRPEIKS 123

Query: 62  YFQKSIAVYDPIIESEYQSLSLDEIV 88
           YFQKSI VYDPIIE EYQSL+L+E+V
Sbjct: 124 YFQKSIVVYDPIIEPEYQSLTLEEMV 148

[Close]
BLAST of MELO3C010039 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-21
Identity = 58/81 (71.60%), Postives = 64/81 (79.01%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYSQAVTPKKWFVSRLEIKT 61
           ES TPPRPSA LI  S  VVQMRP  SPSSN+ESSTPP TTYS  VTP K FV R +IK+
Sbjct: 64  ESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPP-TTYSHTVTPDKRFVPRPKIKS 123

Query: 62  YFQKSIAVYDPIIESEYQSLS 83
           YFQKSI VYDPIIE +YQ+L+
Sbjct: 124 YFQKSIVVYDPIIEPKYQTLA 143

[Close]
BLAST of MELO3C010039 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-06
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1 

Query: 2   ESLTPPRPSAILIHPSGRVVQMRPSGSPSSNKESSTPPPTTYS 45
           ES TPPRPS  LI PSG V+Q RPS S  SN++SS PPPTTYS
Sbjct: 67  ESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSS-PPPTTYS 108

The following BLAST results are available for this feature:
BLAST of MELO3C010039 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCE6_CUCME1.2e-2575.58Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA1.6e-0669.77Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of MELO3C010039 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136323|gb|ADN34145.1|1.7e-2575.58hypothetical protein [Cucumis melo subsp. melo][more]
gi|659098578|ref|XP_008450208.1|4.3e-2171.60PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|700189415|gb|KGN44648.1|2.3e-0669.77hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010039T1MELO3C010039T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010039Cucurbita pepo (Zucchini)cpemeB007
MELO3C010039Cucurbita pepo (Zucchini)cpemeB332
MELO3C010039Bottle gourd (USVL1VR-Ls)lsimeB398
MELO3C010039Cucumber (Gy14) v2cgybmeB040
MELO3C010039Silver-seed gourdcarmeB0540
MELO3C010039Silver-seed gourdcarmeB0946
MELO3C010039Cucumber (Chinese Long) v3cucmeB044
MELO3C010039Watermelon (97103) v2mewmbB244
MELO3C010039Wax gourdmewgoB315
MELO3C010039Cucumber (Gy14) v1cgymeB574
MELO3C010039Cucurbita maxima (Rimu)cmameB069
MELO3C010039Cucurbita maxima (Rimu)cmameB107
MELO3C010039Cucurbita moschata (Rifu)cmomeB061
MELO3C010039Cucurbita moschata (Rifu)cmomeB099
MELO3C010039Wild cucumber (PI 183967)cpimeB044
MELO3C010039Cucumber (Chinese Long) v2cumeB043
MELO3C010039Watermelon (Charleston Gray)mewcgB239
MELO3C010039Watermelon (97103) v1mewmB263