MELO3C009498T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009498T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein .
Location	chr4 : 30484925 .. 30485460 (-)
Sequence length	536

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTAAAGGAAAAAAGAGCAAAAGAAAAACTTGCGAAAAGAGTTAAAAAGAGAAAACACAAAGAGAGCCAAGATGGAGGGGAAGAAGCTGGCTTTGGTAGTGGTGATGACGACAATGATATTTACGTGTTGTTTAGCTCATGTTGCCTTGAACGAAGAACGTCAGTTTGAGGAAAATGAAAACAAGGAGTACATTCAGCTCTTCTCCGACGATAGTAACAATGTCGGAGAAGGAGTAAAGTACAAAAACGATTACTCGAGGAAGATGATAAAAGAGGCACCGACACCGACACCGACACCGCCGCCACCATCTATTTGTTATGGAAATTTCTGTGGTGGTGGACTACTCCCTTGTGATGAACCATGCTTTTGCAGTATTCCACTGGGTGCAACGAGGGGAAATTGTGTTTTGTATTAATCCCCTTTTCCATGTTATATTATTATGCACGTAAGCTAAGCTTAACTATTTGCTTTCATATCGATAAATGTGATATGCAAATAATTATATAAATAAAATAAAAGTGGAAAAGGTCAGTTA

mRNA sequence

TCTAAAGGAAAAAAGAGCAAAAGAAAAACTTGCGAAAAGAGTTAAAAAGAGAAAACACAAAGAGAGCCAAGATGGAGGGGAAGAAGCTGGCTTTGGTAGTGGTGATGACGACAATGATATTTACGTGTTGTTTAGCTCATGTTGCCTTGAACGAAGAACGTCAGTTTGAGGAAAATGAAAACAAGGAGTACATTCAGCTCTTCTCCGACGATAGTAACAATGTCGGAGAAGGAGTAAAGTACAAAAACGATTACTCGAGGAAGATGATAAAAGAGGCACCGACACCGACACCGACACCGCCGCCACCATCTATTTGTTATGGAAATTTCTGTGGTGGTGGACTACTCCCTTGTGATGAACCATGCTTTTGCAGTATTCCACTGGGTGCAACGAGGGGAAATTGTGTTTTGTATTAATCCCCTTTTCCATGTTATATTATTATGCACGTAAGCTAAGCTTAACTATTTGCTTTCATATCGATAAATGTGATATGCAAATAATTATATAAATAAAATAAAAGTGGAAAAGGTCAGTTA

Coding sequence (CDS)

ATGGAGGGGAAGAAGCTGGCTTTGGTAGTGGTGATGACGACAATGATATTTACGTGTTGTTTAGCTCATGTTGCCTTGAACGAAGAACGTCAGTTTGAGGAAAATGAAAACAAGGAGTACATTCAGCTCTTCTCCGACGATAGTAACAATGTCGGAGAAGGAGTAAAGTACAAAAACGATTACTCGAGGAAGATGATAAAAGAGGCACCGACACCGACACCGACACCGCCGCCACCATCTATTTGTTATGGAAATTTCTGTGGTGGTGGACTACTCCCTTGTGATGAACCATGCTTTTGCAGTATTCCACTGGGTGCAACGAGGGGAAATTGTGTTTTGTATTAA

Protein sequence

MEGKKLALVVVMTTMIFTCCLAHVALNEERQFEENENKEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCVLY*

Homology

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BLAST of MELO3C009498T1 vs. TrEMBL
Match: A0A0A0LGQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778180 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-46
Identity = 91/115 (79.13%), Postives = 103/115 (89.57%), Query Frame = 1


Query: 1   MEGKKLALVVVMTTMIFTCCLAHVALNEE-RQFEENENKEYIQLFSDDSNNVGEGVKYKN 60
           MEGKKLALVV+M   IFTC LA  ALN++ RQFE+NENKEYIQLFSD SN+  +GV+YK+
Sbjct: 1   MEGKKLALVVLMVMTIFTCSLAQDALNDDKRQFEKNENKEYIQLFSDGSND--KGVRYKD 60

Query: 61  DYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCVLY 115
           DYSRKM+KEAPTPTPTPPPP IC+GNFCGGGLL CDEPCFC+IP+GATRGNCVLY
Sbjct: 61  DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCVLY 113

[Close]

BLAST of MELO3C009498T1 vs. NCBI nr
Match: gi|700204028|gb|KGN59161.1| (hypothetical protein Csa_3G778180 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.7e-46
Identity = 91/115 (79.13%), Postives = 103/115 (89.57%), Query Frame = 1


Query: 1   MEGKKLALVVVMTTMIFTCCLAHVALNEE-RQFEENENKEYIQLFSDDSNNVGEGVKYKN 60
           MEGKKLALVV+M   IFTC LA  ALN++ RQFE+NENKEYIQLFSD SN+  +GV+YK+
Sbjct: 1   MEGKKLALVVLMVMTIFTCSLAQDALNDDKRQFEKNENKEYIQLFSDGSND--KGVRYKD 60

Query: 61  DYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCVLY 115
           DYSRKM+KEAPTPTPTPPPP IC+GNFCGGGLL CDEPCFC+IP+GATRGNCVLY
Sbjct: 61  DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCVLY 113

The following BLAST results are available for this feature:

BLAST of MELO3C009498T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGQ3_CUCSA	1.2e-46	79.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778180 PE=4 SV=1	[more]

BLAST of MELO3C009498T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204028\|gb\|KGN59161.1\|	1.7e-46	79.13	hypothetical protein Csa_3G778180 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C009498	MELO3C009498	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C009498T1	MELO3C009498T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009498T1.cds1	MELO3C009498T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 23..43 scor