MELO3C009498 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C009498
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionBEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein .
Locationchr4 : 30484925 .. 30485460 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAAAGGAAAAAAGAGCAAAAGAAAAACTTGCGAAAAGAGTTAAAAAGAGAAAACACAAAGAGAGCCAAGATGGAGGGGAAGAAGCTGGCTTTGGTAGTGGTGATGACGACAATGATATTTACGTGTTGTTTAGCTCATGTTGCCTTGAACGAAGAACGTCAGTTTGAGGAAAATGAAAACAAGGAGTACATTCAGCTCTTCTCCGACGATAGTAACAATGTCGGAGAAGGAGTAAAGTACAAAAACGATTACTCGAGGAAGATGATAAAAGAGGCACCGACACCGACACCGACACCGCCGCCACCATCTATTTGTTATGGAAATTTCTGTGGTGGTGGACTACTCCCTTGTGATGAACCATGCTTTTGCAGTATTCCACTGGGTGCAACGAGGGGAAATTGTGTTTTGTATTAATCCCCTTTTCCATGTTATATTATTATGCACGTAAGCTAAGCTTAACTATTTGCTTTCATATCGATAAATGTGATATGCAAATAATTATATAAATAAAATAAAAGTGGAAAAGGTCAGTTA

mRNA sequence

TCTAAAGGAAAAAAGAGCAAAAGAAAAACTTGCGAAAAGAGTTAAAAAGAGAAAACACAAAGAGAGCCAAGATGGAGGGGAAGAAGCTGGCTTTGGTAGTGGTGATGACGACAATGATATTTACGTGTTGTTTAGCTCATGTTGCCTTGAACGAAGAACGTCAGTTTGAGGAAAATGAAAACAAGGAGTACATTCAGCTCTTCTCCGACGATAGTAACAATGTCGGAGAAGGAGTAAAGTACAAAAACGATTACTCGAGGAAGATGATAAAAGAGGCACCGACACCGACACCGACACCGCCGCCACCATCTATTTGTTATGGAAATTTCTGTGGTGGTGGACTACTCCCTTGTGATGAACCATGCTTTTGCAGTATTCCACTGGGTGCAACGAGGGGAAATTGTGTTTTGTATTAATCCCCTTTTCCATGTTATATTATTATGCACGTAAGCTAAGCTTAACTATTTGCTTTCATATCGATAAATGTGATATGCAAATAATTATATAAATAAAATAAAAGTGGAAAAGGTCAGTTA

Coding sequence (CDS)

ATGGAGGGGAAGAAGCTGGCTTTGGTAGTGGTGATGACGACAATGATATTTACGTGTTGTTTAGCTCATGTTGCCTTGAACGAAGAACGTCAGTTTGAGGAAAATGAAAACAAGGAGTACATTCAGCTCTTCTCCGACGATAGTAACAATGTCGGAGAAGGAGTAAAGTACAAAAACGATTACTCGAGGAAGATGATAAAAGAGGCACCGACACCGACACCGACACCGCCGCCACCATCTATTTGTTATGGAAATTTCTGTGGTGGTGGACTACTCCCTTGTGATGAACCATGCTTTTGCAGTATTCCACTGGGTGCAACGAGGGGAAATTGTGTTTTGTATTAA

Protein sequence

MEGKKLALVVVMTTMIFTCCLAHVALNEERQFEENENKEYIQLFSDDSNNVGEGVKYKNDYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCVLY*
Homology
[Close]
BLAST of MELO3C009498 vs. TrEMBL
Match: A0A0A0LGQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778180 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-46
Identity = 91/115 (79.13%), Postives = 103/115 (89.57%), Query Frame = 1 

Query: 1   MEGKKLALVVVMTTMIFTCCLAHVALNEE-RQFEENENKEYIQLFSDDSNNVGEGVKYKN 60
           MEGKKLALVV+M   IFTC LA  ALN++ RQFE+NENKEYIQLFSD SN+  +GV+YK+
Sbjct: 1   MEGKKLALVVLMVMTIFTCSLAQDALNDDKRQFEKNENKEYIQLFSDGSND--KGVRYKD 60

Query: 61  DYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCVLY 115
           DYSRKM+KEAPTPTPTPPPP IC+GNFCGGGLL CDEPCFC+IP+GATRGNCVLY
Sbjct: 61  DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCVLY 113

[Close]
BLAST of MELO3C009498 vs. NCBI nr
Match: gi|700204028|gb|KGN59161.1| (hypothetical protein Csa_3G778180 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.7e-46
Identity = 91/115 (79.13%), Postives = 103/115 (89.57%), Query Frame = 1 

Query: 1   MEGKKLALVVVMTTMIFTCCLAHVALNEE-RQFEENENKEYIQLFSDDSNNVGEGVKYKN 60
           MEGKKLALVV+M   IFTC LA  ALN++ RQFE+NENKEYIQLFSD SN+  +GV+YK+
Sbjct: 1   MEGKKLALVVLMVMTIFTCSLAQDALNDDKRQFEKNENKEYIQLFSDGSND--KGVRYKD 60

Query: 61  DYSRKMIKEAPTPTPTPPPPSICYGNFCGGGLLPCDEPCFCSIPLGATRGNCVLY 115
           DYSRKM+KEAPTPTPTPPPP IC+GNFCGGGLL CDEPCFC+IP+GATRGNCVLY
Sbjct: 61  DYSRKMMKEAPTPTPTPPPPPICFGNFCGGGLLDCDEPCFCNIPMGATRGNCVLY 113

The following BLAST results are available for this feature:
BLAST of MELO3C009498 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGQ3_CUCSA1.2e-4679.13Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778180 PE=4 SV=1[more]
BLAST of MELO3C009498 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204028|gb|KGN59161.1|1.7e-4679.13hypothetical protein Csa_3G778180 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009498T1MELO3C009498T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 23..43
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C009498Csa3G778180Cucumber (Chinese Long) v2cumeB223
MELO3C009498Cla017666Watermelon (97103) v1mewmB346
MELO3C009498ClCG10G018680Watermelon (Charleston Gray)mewcgB315
MELO3C009498Cla97C10G201720Watermelon (97103) v2mewmbB316
MELO3C009498CSPI03G35190Wild cucumber (PI 183967)cpimeB214
MELO3C009498Cucsa.241420Cucumber (Gy14) v1cgymeB412
MELO3C009498CmoCh14G003240Cucurbita moschata (Rifu)cmomeB215
MELO3C009498Lsi03G018650Bottle gourd (USVL1VR-Ls)lsimeB260
MELO3C009498Cp4.1LG03g00750Cucurbita pepo (Zucchini)cpemeB571
MELO3C009498CsaV3_3G037550Cucumber (Chinese Long) v3cucmeB218
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009498Cucurbita pepo (Zucchini)cpemeB054
MELO3C009498Cucurbita pepo (Zucchini)cpemeB277
MELO3C009498Cucurbita pepo (Zucchini)cpemeB796
MELO3C009498Bottle gourd (USVL1VR-Ls)lsimeB070
MELO3C009498Bottle gourd (USVL1VR-Ls)lsimeB140
MELO3C009498Cucumber (Gy14) v2cgybmeB061
MELO3C009498Cucumber (Gy14) v2cgybmeB184
MELO3C009498Cucumber (Gy14) v2cgybmeB424
MELO3C009498Cucumber (Gy14) v2cgybmeB428
MELO3C009498Silver-seed gourdcarmeB0241
MELO3C009498Silver-seed gourdcarmeB0251
MELO3C009498Silver-seed gourdcarmeB0422
MELO3C009498Silver-seed gourdcarmeB0613
MELO3C009498Silver-seed gourdcarmeB0803
MELO3C009498Cucumber (Chinese Long) v3cucmeB072
MELO3C009498Cucumber (Chinese Long) v3cucmeB495
MELO3C009498Cucumber (Chinese Long) v3cucmeB499
MELO3C009498Watermelon (97103) v2mewmbB326
MELO3C009498Watermelon (97103) v2mewmbB331
MELO3C009498Wax gourdmewgoB383
MELO3C009498Wax gourdmewgoB419
MELO3C009498Wax gourdmewgoB422
MELO3C009498Wax gourdmewgoB426
MELO3C009498Melon (DHL92) v3.5.1memeB135
MELO3C009498Melon (DHL92) v3.5.1memeB142
MELO3C009498Cucumber (Gy14) v1cgymeB091
MELO3C009498Cucumber (Gy14) v1cgymeB331
MELO3C009498Cucurbita maxima (Rimu)cmameB229
MELO3C009498Cucurbita maxima (Rimu)cmameB519
MELO3C009498Cucurbita maxima (Rimu)cmameB600
MELO3C009498Cucurbita maxima (Rimu)cmameB755
MELO3C009498Cucurbita maxima (Rimu)cmameB790
MELO3C009498Cucurbita moschata (Rifu)cmomeB590
MELO3C009498Cucurbita moschata (Rifu)cmomeB747
MELO3C009498Cucurbita moschata (Rifu)cmomeB777
MELO3C009498Wild cucumber (PI 183967)cpimeB067
MELO3C009498Wild cucumber (PI 183967)cpimeB485
MELO3C009498Wild cucumber (PI 183967)cpimeB489
MELO3C009498Cucumber (Chinese Long) v2cumeB068
MELO3C009498Cucumber (Chinese Long) v2cumeB484
MELO3C009498Cucumber (Chinese Long) v2cumeB487
MELO3C009498Watermelon (Charleston Gray)mewcgB327
MELO3C009498Watermelon (Charleston Gray)mewcgB330
MELO3C009498Watermelon (97103) v1mewmB380
MELO3C009498Watermelon (97103) v1mewmB381