MELO3C009436T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009436T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative ribosome biogenesis protein RLP24
Location	chr4 : 30954167 .. 30954539 (-)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGATAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGGTTTTTAATTTCTTCCATTCCCATTTGTTTTAATGCCTATATATTTTGTGAATACTTACTACTTCAGGTGTAACTCGGTTCGTCACATTTGCAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTATGGAAGAATGA

mRNA sequence

ATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGATAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTATGGAAGAATGA

Coding sequence (CDS)

ATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGATAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTATGGAAGAATGA

Protein sequence

MKGCDTGKHEFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE*

Homology

[Close]

BLAST of MELO3C009436T1 vs. Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DR 69
           EFE+KRNRPERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+
Sbjct: 70  EFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQ 129

Query: 70  SLTL------PKIKVKVVPSQGEHNQPMEE 93
           ++ +       KIKV V   +   N+ MEE
Sbjct: 130 NIHMVQAPGAQKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of MELO3C009436T1 vs. TrEMBL
Match: D7TJ26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03850 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-19
Identity = 60/99 (60.61%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 70  EFERKRNRPERYDRNLAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N PMEE
Sbjct: 130 GIHMVKAPAVLEKEPSLTLPKIKVKVSRPQAEENHPMEE 168

[Close]

BLAST of MELO3C009436T1 vs. TrEMBL
Match: F6GW49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01330 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 29  EFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 88

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N  MEE
Sbjct: 89  SIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 127

[Close]

BLAST of MELO3C009436T1 vs. TrEMBL
Match: A5C6X2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033681 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 126 EFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 185

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N  MEE
Sbjct: 186 SIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 224

[Close]

BLAST of MELO3C009436T1 vs. TrEMBL
Match: V4TMP0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100228472mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 58/99 (58.59%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED------ 69
           EFERKRNRPERYDRN AE  LKAIKKIDK+   RE RH   RM+GKKAK  +E       
Sbjct: 5   EFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMKGKKAKEQKEAAIELEQ 64

Query: 70  ----------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE 93
                     L +D+SLTLPKIKVK V +Q E NQ MEE
Sbjct: 65  GIHLVKAPSVLAQDQSLTLPKIKVK-VQAQAEENQAMEE 102

[Close]

BLAST of MELO3C009436T1 vs. TrEMBL
Match: I1MS60_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G318800 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-18
Identity = 57/99 (57.58%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAI KIDK+   RE RH   RM+GKK K L+E +KE   
Sbjct: 70  EFERKRNRPERYDRNLAENVLKAIPKIDKIRVTREERHHKNRMKGKKEKLLKEAVKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        D SLTLPKIKVKV   Q E N  MEE
Sbjct: 130 GISLVKAPSVLQQDPSLTLPKIKVKVSQQQSEENHAMEE 168

[Close]

BLAST of MELO3C009436T1 vs. TAIR10
Match: AT2G44860.1 (AT2G44860.1 Ribosomal protein L24e family protein)

HSP 1 Score: 76.6 bits (187), Expect = 8.8e-15
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DR 69
           EFE+KRNRPERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+
Sbjct: 70  EFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQ 129

Query: 70  SLTL------PKIKVKVVPSQGEHNQPMEE 93
           ++ +       KIKV V   +   N+ MEE
Sbjct: 130 NIHMVQAPGAQKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of MELO3C009436T1 vs. NCBI nr
Match: gi|719999575|ref|XP_010255763.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Nelumbo nucifera])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 60/99 (60.61%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 70  EFERKRNRPERYDRNLAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREATKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N PMEE
Sbjct: 130 SIHMVKAPAVLQQEPSLTLPKIKVKVAHQQSEENHPMEE 168

[Close]

BLAST of MELO3C009436T1 vs. NCBI nr
Match: gi|225440980|ref|XP_002283418.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera])

HSP 1 Score: 103.2 bits (256), Expect = 2.5e-19
Identity = 60/99 (60.61%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 70  EFERKRNRPERYDRNLAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N PMEE
Sbjct: 130 GIHMVKAPAVLEKEPSLTLPKIKVKVSRPQAEENHPMEE 168

[Close]

BLAST of MELO3C009436T1 vs. NCBI nr
Match: gi|720071969|ref|XP_010278219.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Nelumbo nucifera])

HSP 1 Score: 101.7 bits (252), Expect = 7.2e-19
Identity = 59/99 (59.60%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKK-------AKGLEE 69
           EFERKRNRPERYDRN  E  LKAIKKIDKV   RE+RH A RM+GKK       AK LE+
Sbjct: 70  EFERKRNRPERYDRNLTENTLKAIKKIDKVRVDREARHHAMRMKGKKAKVQREAAKELEQ 129

Query: 70  D---------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE 93
                     L+ED S TLPKIKVK    Q E N PMEE
Sbjct: 130 SIHMVKAPAVLREDSSFTLPKIKVKASHQQAEENHPMEE 168

[Close]

BLAST of MELO3C009436T1 vs. NCBI nr
Match: gi|147803507|emb|CAN68722.1| (hypothetical protein VITISV_033681 [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 126 EFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 185

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N  MEE
Sbjct: 186 SIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 224

[Close]

BLAST of MELO3C009436T1 vs. NCBI nr
Match: gi|225436335|ref|XP_002268489.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 70  EFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N  MEE
Sbjct: 130 SIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 168

The following BLAST results are available for this feature:

BLAST of MELO3C009436T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLP24_ARATH	1.6e-13	47.78	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 ...	[more]

BLAST of MELO3C009436T1 vs. TrEMBL


Match Name	E-value	Identity	Description
D7TJ26_VITVI	1.7e-19	60.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03850 PE=4 SV=...	[more]
F6GW49_VITVI	1.1e-18	59.60	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01330 PE=4 SV=...	[more]
A5C6X2_VITVI	1.1e-18	59.60	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033681 PE=4 SV=1	[more]
V4TMP0_9ROSI	3.3e-18	58.59	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100228472mg PE...	[more]
I1MS60_SOYBN	7.3e-18	57.58	Uncharacterized protein OS=Glycine max GN=GLYMA_13G318800 PE=4 SV=1	[more]

BLAST of MELO3C009436T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44860.1	8.8e-15	47.78	Ribosomal protein L24e family protein	[more]

BLAST of MELO3C009436T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|719999575\|ref\|XP_010255763.1\|	1.1e-19	60.61	PREDICTED: probable ribosome biogenesis protein RLP24 [Nelumbo nucifera]	[more]
gi\|225440980\|ref\|XP_002283418.1\|	2.5e-19	60.61	PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]	[more]
gi\|720071969\|ref\|XP_010278219.1\|	7.2e-19	59.60	PREDICTED: probable ribosome biogenesis protein RLP24 [Nelumbo nucifera]	[more]
gi\|147803507\|emb\|CAN68722.1\|	1.6e-18	59.60	hypothetical protein VITISV_033681 [Vitis vinifera]	[more]
gi\|225436335\|ref\|XP_002268489.1\|	1.6e-18	59.60	PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000988	Ribosomal_L24e-rel
IPR024546	Ribosome biogenesis protein RLP24

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C009436	MELO3C009436	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009436T1.cds2	MELO3C009436T1.cds2	CDS
MELO3C009436T1.cds1	MELO3C009436T1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C009436T1	MELO3C009436T1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 10..66 score: 4.7
IPR024546	Ribosome biogenesis protein RLP24	PANTHER	PTHR10792:SF8	RIBOSOME BIOGENESIS PROTEIN RLP24-RELATED	coord: 10..66 score: 4.7