MELO3C009436 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009436
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative ribosome biogenesis protein RLP24
Location	chr4 : 30954167 .. 30954539 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGATAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGGTTTTTAATTTCTTCCATTCCCATTTGTTTTAATGCCTATATATTTTGTGAATACTTACTACTTCAGGTGTAACTCGGTTCGTCACATTTGCAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTATGGAAGAATGA

mRNA sequence

ATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGATAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTATGGAAGAATGA

Coding sequence (CDS)

ATGAAAGGATGTGACACAGGTAAACATGAGTTTGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCATTGAAGGCTATAAAGAAGATTGATAAAGTCATAGCGATTAGGGAATCAAGACACATTGCATGGAGAATGCGTGGAAAGAAAGCAAAGGGGCTTGAAGAGGATCTGAAGGAGGATCGTTCCCTCACCCTTCCAAAGATCAAAGTCAAGGTGGTACCATCACAAGGAGAGCACAATCAGCCTATGGAAGAATGA

Protein sequence

MKGCDTGKHEFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKEDRSLTLPKIKVKVVPSQGEHNQPMEE*

Homology

[Close]

BLAST of MELO3C009436 vs. Swiss-Prot
Match: RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-13
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DR 69
           EFE+KRNRPERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+
Sbjct: 70  EFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQ 129

Query: 70  SLTL------PKIKVKVVPSQGEHNQPMEE 93
           ++ +       KIKV V   +   N+ MEE
Sbjct: 130 NIHMVQAPGAQKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of MELO3C009436 vs. TrEMBL
Match: D7TJ26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03850 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-19
Identity = 60/99 (60.61%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 70  EFERKRNRPERYDRNLAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N PMEE
Sbjct: 130 GIHMVKAPAVLEKEPSLTLPKIKVKVSRPQAEENHPMEE 168

[Close]

BLAST of MELO3C009436 vs. TrEMBL
Match: F6GW49_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01330 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 29  EFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 88

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N  MEE
Sbjct: 89  SIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 127

[Close]

BLAST of MELO3C009436 vs. TrEMBL
Match: A5C6X2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033681 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 126 EFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 185

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N  MEE
Sbjct: 186 SIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 224

[Close]

BLAST of MELO3C009436 vs. TrEMBL
Match: V4TMP0_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100228472mg PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 58/99 (58.59%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEED------ 69
           EFERKRNRPERYDRN AE  LKAIKKIDK+   RE RH   RM+GKKAK  +E       
Sbjct: 5   EFERKRNRPERYDRNLAENTLKAIKKIDKIRVAREERHHKLRMKGKKAKEQKEAAIELEQ 64

Query: 70  ----------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE 93
                     L +D+SLTLPKIKVK V +Q E NQ MEE
Sbjct: 65  GIHLVKAPSVLAQDQSLTLPKIKVK-VQAQAEENQAMEE 102

[Close]

BLAST of MELO3C009436 vs. TrEMBL
Match: I1MS60_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G318800 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-18
Identity = 57/99 (57.58%), Postives = 61/99 (61.62%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAI KIDK+   RE RH   RM+GKK K L+E +KE   
Sbjct: 70  EFERKRNRPERYDRNLAENVLKAIPKIDKIRVTREERHHKNRMKGKKEKLLKEAVKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        D SLTLPKIKVKV   Q E N  MEE
Sbjct: 130 GISLVKAPSVLQQDPSLTLPKIKVKVSQQQSEENHAMEE 168

[Close]

BLAST of MELO3C009436 vs. TAIR10
Match: AT2G44860.1 (AT2G44860.1 Ribosomal protein L24e family protein)

HSP 1 Score: 76.6 bits (187), Expect = 8.8e-15
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE-DR 69
           EFE+KRNRPERYDRN  E  L AIKKI K+   RE++HI  R++  K K L +D+KE D+
Sbjct: 70  EFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQ 129

Query: 70  SLTL------PKIKVKVVPSQGEHNQPMEE 93
           ++ +       KIKV V   +   N+ MEE
Sbjct: 130 NIHMVQAPGAQKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of MELO3C009436 vs. NCBI nr
Match: gi|719999575|ref|XP_010255763.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Nelumbo nucifera])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 60/99 (60.61%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 70  EFERKRNRPERYDRNLAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREATKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N PMEE
Sbjct: 130 SIHMVKAPAVLQQEPSLTLPKIKVKVAHQQSEENHPMEE 168

[Close]

BLAST of MELO3C009436 vs. NCBI nr
Match: gi|225440980|ref|XP_002283418.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera])

HSP 1 Score: 103.2 bits (256), Expect = 2.5e-19
Identity = 60/99 (60.61%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 70  EFERKRNRPERYDRNLAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N PMEE
Sbjct: 130 GIHMVKAPAVLEKEPSLTLPKIKVKVSRPQAEENHPMEE 168

[Close]

BLAST of MELO3C009436 vs. NCBI nr
Match: gi|720071969|ref|XP_010278219.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Nelumbo nucifera])

HSP 1 Score: 101.7 bits (252), Expect = 7.2e-19
Identity = 59/99 (59.60%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKK-------AKGLEE 69
           EFERKRNRPERYDRN  E  LKAIKKIDKV   RE+RH A RM+GKK       AK LE+
Sbjct: 70  EFERKRNRPERYDRNLTENTLKAIKKIDKVRVDREARHHAMRMKGKKAKVQREAAKELEQ 129

Query: 70  D---------LKEDRSLTLPKIKVKVVPSQGEHNQPMEE 93
                     L+ED S TLPKIKVK    Q E N PMEE
Sbjct: 130 SIHMVKAPAVLREDSSFTLPKIKVKASHQQAEENHPMEE 168

[Close]

BLAST of MELO3C009436 vs. NCBI nr
Match: gi|147803507|emb|CAN68722.1| (hypothetical protein VITISV_033681 [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 126 EFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 185

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N  MEE
Sbjct: 186 SIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 224

[Close]

BLAST of MELO3C009436 vs. NCBI nr
Match: gi|225436335|ref|XP_002268489.1| (PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 59/99 (59.60%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 10  EFERKRNRPERYDRNFAEEPLKAIKKIDKVIAIRESRHIAWRMRGKKAKGLEEDLKE--- 69
           EFERKRNRPERYDRN AE  LKAIKKIDKV   RE+RH A RM+GKKAK   E  KE   
Sbjct: 70  EFERKRNRPERYDRNVAENTLKAIKKIDKVRVDREARHHALRMKGKKAKEQREAAKELEQ 129

Query: 70  -------------DRSLTLPKIKVKVVPSQGEHNQPMEE 93
                        + SLTLPKIKVKV   Q E N  MEE
Sbjct: 130 SIHMVKAPAVLQQEPSLTLPKIKVKVSQQQSEENHAMEE 168

The following BLAST results are available for this feature:

BLAST of MELO3C009436 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLP24_ARATH	1.6e-13	47.78	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 ...	[more]

BLAST of MELO3C009436 vs. TrEMBL


Match Name	E-value	Identity	Description
D7TJ26_VITVI	1.7e-19	60.61	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03850 PE=4 SV=...	[more]
F6GW49_VITVI	1.1e-18	59.60	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01330 PE=4 SV=...	[more]
A5C6X2_VITVI	1.1e-18	59.60	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033681 PE=4 SV=1	[more]
V4TMP0_9ROSI	3.3e-18	58.59	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100228472mg PE...	[more]
I1MS60_SOYBN	7.3e-18	57.58	Uncharacterized protein OS=Glycine max GN=GLYMA_13G318800 PE=4 SV=1	[more]

BLAST of MELO3C009436 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44860.1	8.8e-15	47.78	Ribosomal protein L24e family protein	[more]

BLAST of MELO3C009436 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|719999575\|ref\|XP_010255763.1\|	1.1e-19	60.61	PREDICTED: probable ribosome biogenesis protein RLP24 [Nelumbo nucifera]	[more]
gi\|225440980\|ref\|XP_002283418.1\|	2.5e-19	60.61	PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]	[more]
gi\|720071969\|ref\|XP_010278219.1\|	7.2e-19	59.60	PREDICTED: probable ribosome biogenesis protein RLP24 [Nelumbo nucifera]	[more]
gi\|147803507\|emb\|CAN68722.1\|	1.6e-18	59.60	hypothetical protein VITISV_033681 [Vitis vinifera]	[more]
gi\|225436335\|ref\|XP_002268489.1\|	1.6e-18	59.60	PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000988	Ribosomal_L24e-rel
IPR024546	Ribosome biogenesis protein RLP24

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009436T1	MELO3C009436T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 10..66 score: 4.7
IPR024546	Ribosome biogenesis protein RLP24	PANTHER	PTHR10792:SF8	RIBOSOME BIOGENESIS PROTEIN RLP24-RELATED	coord: 10..66 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C009436	Cla017724	Watermelon (97103) v1	mewmB346
MELO3C009436	ClCG10G019300	Watermelon (Charleston Gray)	mewcgB315
MELO3C009436	Cla97C10G202400	Watermelon (97103) v2	mewmbB316
MELO3C009436	CmaCh06G004500	Cucurbita maxima (Rimu)	cmameB755
MELO3C009436	CmoCh06G004490	Cucurbita moschata (Rifu)	cmomeB747
MELO3C009436	Cp4.1LG08g10440	Cucurbita pepo (Zucchini)	cpemeB796
MELO3C009436	Carg00918	Silver-seed gourd	carmeB0161
MELO3C009436	CsaV3_3G036890	Cucumber (Chinese Long) v3	cucmeB218

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C009436	Cucurbita moschata (Rifu)	cmomeB215
MELO3C009436	Cucurbita moschata (Rifu)	cmomeB590
MELO3C009436	Cucurbita moschata (Rifu)	cmomeB777
MELO3C009436	Wild cucumber (PI 183967)	cpimeB216
MELO3C009436	Wild cucumber (PI 183967)	cpimeB485
MELO3C009436	Wild cucumber (PI 183967)	cpimeB486
MELO3C009436	Cucumber (Chinese Long) v2	cumeB224
MELO3C009436	Cucumber (Chinese Long) v2	cumeB484
MELO3C009436	Watermelon (Charleston Gray)	mewcgB327
MELO3C009436	Watermelon (Charleston Gray)	mewcgB330
MELO3C009436	Watermelon (97103) v1	mewmB380
MELO3C009436	Watermelon (97103) v1	mewmB381
MELO3C009436	Cucurbita pepo (Zucchini)	cpemeB054
MELO3C009436	Cucurbita pepo (Zucchini)	cpemeB443
MELO3C009436	Cucurbita pepo (Zucchini)	cpemeB571
MELO3C009436	Bottle gourd (USVL1VR-Ls)	lsimeB070
MELO3C009436	Bottle gourd (USVL1VR-Ls)	lsimeB140
MELO3C009436	Bottle gourd (USVL1VR-Ls)	lsimeB260
MELO3C009436	Cucumber (Gy14) v2	cgybmeB184
MELO3C009436	Cucumber (Gy14) v2	cgybmeB424
MELO3C009436	Cucumber (Gy14) v2	cgybmeB425
MELO3C009436	Silver-seed gourd	carmeB0241
MELO3C009436	Silver-seed gourd	carmeB0251
MELO3C009436	Silver-seed gourd	carmeB0804
MELO3C009436	Cucumber (Chinese Long) v3	cucmeB495
MELO3C009436	Cucumber (Chinese Long) v3	cucmeB496
MELO3C009436	Watermelon (97103) v2	mewmbB326
MELO3C009436	Watermelon (97103) v2	mewmbB331
MELO3C009436	Wax gourd	mewgoB388
MELO3C009436	Wax gourd	mewgoB373
MELO3C009436	Wax gourd	mewgoB418
MELO3C009436	Wax gourd	mewgoB421
MELO3C009436	Melon (DHL92) v3.5.1	memeB049
MELO3C009436	Melon (DHL92) v3.5.1	memeB142
MELO3C009436	Cucumber (Gy14) v1	cgymeB091
MELO3C009436	Cucumber (Gy14) v1	cgymeB613
MELO3C009436	Cucumber (Gy14) v1	cgymeB632
MELO3C009436	Cucurbita maxima (Rimu)	cmameB229
MELO3C009436	Cucurbita maxima (Rimu)	cmameB600
MELO3C009436	Cucurbita maxima (Rimu)	cmameB790