MELO3C009072T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C009072T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAnkyrin repeat domain-containing protein 49
Locationchr8 : 17846395 .. 17846905 (+)
Sequence length315
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAACTCCGAAAAGACAACAATGGTGCAACTTCGCTTCTACCTCTCCAAGATGATGACGATGCTGAAACTTTGCCTCCAGCTATTCAAGATAACGATGACGGTACAACCACCTCTAGCTCTGCAAGATGGAGATGATGGGGAAGTTCTGACTCCCTCTATCTAAGATTAGGACAGTGCAACTCCTCCTCCGCTTCTTTAAGAGGACGACGATGGTACAGTTTCGCCTCCACCTCTTTATGAAGATGACGATGGTGTAGCTCTGCCTCCACTACTCTAAAATGATGATGATGGTGCAGCTCCGCCTCTGCCTCTCCAAAAATATAACAATTATGCAGCTTCACCTCTGCTTATCCAAGAAGACGACGATGTTGCAGCTCCACCTCTGCCTCTTCAAGCGCCTCTACCTCTTCAAAAAGATAACAATGATATAGCTCTACCTTCGTCTCTCCAAGATAAAGATGGTGCAGTTCTTCCTCTTCAAAATGATGGCAAAGTAGAGCTATGA

mRNA sequence

ATGGTGCAACTCCGAAAAGACAACAATGGTGCAACTTCGCTTCTACCTCTCCAAGATGATGACGATGCTGAAACTTTGCCTCCAGCTATTCAAGATAACGATGACGCTCCGCCTCTGCCTCTCCAAAAATATAACAATTATGCAGCTTCACCTCTGCTTATCCAAGAAGACGACGATGTTGCAGCTCCACCTCTGCCTCTTCAAGCGCCTCTACCTCTTCAAAAAGATAACAATGATATAGCTCTACCTTCGTCTCTCCAAGATAAAGATGGTGCAGTTCTTCCTCTTCAAAATGATGGCAAAGTAGAGCTATGA

Coding sequence (CDS)

ATGGTGCAACTCCGAAAAGACAACAATGGTGCAACTTCGCTTCTACCTCTCCAAGATGATGACGATGCTGAAACTTTGCCTCCAGCTATTCAAGATAACGATGACGCTCCGCCTCTGCCTCTCCAAAAATATAACAATTATGCAGCTTCACCTCTGCTTATCCAAGAAGACGACGATGTTGCAGCTCCACCTCTGCCTCTTCAAGCGCCTCTACCTCTTCAAAAAGATAACAATGATATAGCTCTACCTTCGTCTCTCCAAGATAAAGATGGTGCAGTTCTTCCTCTTCAAAATGATGGCAAAGTAGAGCTATGA

Protein sequence

MVQLRKDNNGATSLLPLQDDDDAETLPPAIQDNDDAPPLPLQKYNNYAASPLLIQEDDDVAAPPLPLQAPLPLQKDNNDIALPSSLQDKDGAVLPLQNDGKVEL*
Homology
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BLAST of MELO3C009072T1 vs. NCBI nr
Match: gi|659114278|ref|XP_008456987.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1 

Query: 2   VQLRKDNNGATSLLPLQDDDDAETLPPAIQDNDDAPPLPLQKYNNYAASPLLIQEDDDVA 61
           + L+ D++G T   PLQ DDD  +L P +QD+DD+  LP         S   +Q+D+D  
Sbjct: 73  LSLQNDDDGTTLPPPLQYDDDNASLLPPLQDDDDSATLP---------SFHSLQDDEDAL 132

Query: 62  APPLPLQAPLPLQKDNNDIALPSSLQDKDGAVLPLQNDGKVEL 105
           +PPL        Q D++  ALP  LQ++DG V  LQNDGK+++
Sbjct: 133 SPPL--------QDDDDGAALPLPLQNEDGVVPLLQNDGKMKM 158

The following BLAST results are available for this feature:
BLAST of MELO3C009072T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114278|ref|XP_008456987.1|1.0e-0839.81PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C009072MELO3C009072gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C009072T1MELO3C009072T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C009072T1.cds1MELO3C009072T1.cds1CDS
MELO3C009072T1.cds2MELO3C009072T1.cds2CDS