MELO3C009072 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C009072
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAnkyrin repeat domain-containing protein 49
Locationchr8 : 17846395 .. 17846905 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAACTCCGAAAAGACAACAATGGTGCAACTTCGCTTCTACCTCTCCAAGATGATGACGATGCTGAAACTTTGCCTCCAGCTATTCAAGATAACGATGACGGTACAACCACCTCTAGCTCTGCAAGATGGAGATGATGGGGAAGTTCTGACTCCCTCTATCTAAGATTAGGACAGTGCAACTCCTCCTCCGCTTCTTTAAGAGGACGACGATGGTACAGTTTCGCCTCCACCTCTTTATGAAGATGACGATGGTGTAGCTCTGCCTCCACTACTCTAAAATGATGATGATGGTGCAGCTCCGCCTCTGCCTCTCCAAAAATATAACAATTATGCAGCTTCACCTCTGCTTATCCAAGAAGACGACGATGTTGCAGCTCCACCTCTGCCTCTTCAAGCGCCTCTACCTCTTCAAAAAGATAACAATGATATAGCTCTACCTTCGTCTCTCCAAGATAAAGATGGTGCAGTTCTTCCTCTTCAAAATGATGGCAAAGTAGAGCTATGA

mRNA sequence

ATGGTGCAACTCCGAAAAGACAACAATGGTGCAACTTCGCTTCTACCTCTCCAAGATGATGACGATGCTGAAACTTTGCCTCCAGCTATTCAAGATAACGATGACGCTCCGCCTCTGCCTCTCCAAAAATATAACAATTATGCAGCTTCACCTCTGCTTATCCAAGAAGACGACGATGTTGCAGCTCCACCTCTGCCTCTTCAAGCGCCTCTACCTCTTCAAAAAGATAACAATGATATAGCTCTACCTTCGTCTCTCCAAGATAAAGATGGTGCAGTTCTTCCTCTTCAAAATGATGGCAAAGTAGAGCTATGA

Coding sequence (CDS)

ATGGTGCAACTCCGAAAAGACAACAATGGTGCAACTTCGCTTCTACCTCTCCAAGATGATGACGATGCTGAAACTTTGCCTCCAGCTATTCAAGATAACGATGACGCTCCGCCTCTGCCTCTCCAAAAATATAACAATTATGCAGCTTCACCTCTGCTTATCCAAGAAGACGACGATGTTGCAGCTCCACCTCTGCCTCTTCAAGCGCCTCTACCTCTTCAAAAAGATAACAATGATATAGCTCTACCTTCGTCTCTCCAAGATAAAGATGGTGCAGTTCTTCCTCTTCAAAATGATGGCAAAGTAGAGCTATGA

Protein sequence

MVQLRKDNNGATSLLPLQDDDDAETLPPAIQDNDDAPPLPLQKYNNYAASPLLIQEDDDVAAPPLPLQAPLPLQKDNNDIALPSSLQDKDGAVLPLQNDGKVEL*
Homology
[Close]
BLAST of MELO3C009072 vs. NCBI nr
Match: gi|659114278|ref|XP_008456987.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1 

Query: 2   VQLRKDNNGATSLLPLQDDDDAETLPPAIQDNDDAPPLPLQKYNNYAASPLLIQEDDDVA 61
           + L+ D++G T   PLQ DDD  +L P +QD+DD+  LP         S   +Q+D+D  
Sbjct: 73  LSLQNDDDGTTLPPPLQYDDDNASLLPPLQDDDDSATLP---------SFHSLQDDEDAL 132

Query: 62  APPLPLQAPLPLQKDNNDIALPSSLQDKDGAVLPLQNDGKVEL 105
           +PPL        Q D++  ALP  LQ++DG V  LQNDGK+++
Sbjct: 133 SPPL--------QDDDDGAALPLPLQNEDGVVPLLQNDGKMKM 158

The following BLAST results are available for this feature:
BLAST of MELO3C009072 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114278|ref|XP_008456987.1|1.0e-0839.81PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009072T1MELO3C009072T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C009072Silver-seed gourdcarmeB0195
MELO3C009072Silver-seed gourdcarmeB0288
MELO3C009072Cucumber (Chinese Long) v3cucmeB343
MELO3C009072Watermelon (97103) v2mewmbB534
MELO3C009072Wax gourdmewgoB642
MELO3C009072Cucumber (Gy14) v1cgymeB576
MELO3C009072Cucumber (Gy14) v1cgymeB577
MELO3C009072Cucurbita maxima (Rimu)cmameB613
MELO3C009072Cucurbita maxima (Rimu)cmameB810
MELO3C009072Cucurbita moschata (Rifu)cmomeB601
MELO3C009072Cucurbita moschata (Rifu)cmomeB610
MELO3C009072Cucurbita moschata (Rifu)cmomeB794
MELO3C009072Wild cucumber (PI 183967)cpimeB341
MELO3C009072Cucumber (Chinese Long) v2cumeB331
MELO3C009072Cucumber (Chinese Long) v2cumeB336
MELO3C009072Watermelon (Charleston Gray)mewcgB526
MELO3C009072Watermelon (97103) v1mewmB588
MELO3C009072Cucurbita pepo (Zucchini)cpemeB072
MELO3C009072Cucurbita pepo (Zucchini)cpemeB451
MELO3C009072Bottle gourd (USVL1VR-Ls)lsimeB152
MELO3C009072Cucumber (Gy14) v2cgybmeB285