MELO3C009064T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009064T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Lon protease
Location	chr8 : 17987848 .. 17988036 (-)
Sequence length	189

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAACTTTGCCTGTGCCGCCTTCATCGCTGTTGTCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCATCCCCCGCTCCCGGCCCATCCAGCGGTGTTTCCGCTACTTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

mRNA sequence

ATGGAAATGAAGAACTTTGCCTGTGCCGCCTTCATCGCTGTTGTCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCATCCCCCGCTCCCGGCCCATCCAGCGGTGTTTCCGCTACTTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Coding sequence (CDS)

ATGGAAATGAAGAACTTTGCCTGTGCCGCCTTCATCGCTGTTGTCGCCTCCCTGAGCATGGTTTTGGCCTCTGATGAAGCAGCATCCCCCGCTCCCGGCCCATCCAGCGGTGTTTCCGCTACTTTGCCCGTCGTCGGGACATTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTGCCTTCAGTAA

Protein sequence

MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYCLQ*

Homology

[Close]

BLAST of MELO3C009064T1 vs. Swiss-Prot
Match: AGP23_ARATH (Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 9.2e-10
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  AC    A  AS++ V+A++E  +PAPGP+S  SA LP +G+L+GAS  SL +Y 
Sbjct: 1  MEMKKIACGVLFAA-ASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064T1 vs. Swiss-Prot
Match: AGP40_ARATH (Probable arabinogalactan protein 40 OS=Arabidopsis thaliana GN=AGP40 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.2e-06
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMKN   A FI+ V   S+  A+ E+ +P+PG SS  +   PVVG+++ AS ++ +A  
Sbjct: 1  MEMKNIFVALFISAVLVSSVSAATMESPAPSPGASSASTVAFPVVGSIVAASLSAFLALL 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of MELO3C009064T1 vs. TrEMBL
Match: A0A059DIY4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.9e-11
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  +A  AS+S VLASD++ +PAPGPSSG SA LPV G+L+GAS  S  AY 
Sbjct: 34 MDMKKISCAVLVAA-ASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

[Close]

BLAST of MELO3C009064T1 vs. TrEMBL
Match: U5G938_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05490g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.4e-10
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          ME+K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLPVVG+L+GAS  S  AY 
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064T1 vs. TrEMBL
Match: B9HNM7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06810g PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-09
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  ACA   A  AS+S V+A DE A+PAP P+SG SA+LP+VG+L+GAS AS IA  
Sbjct: 1  MEMKKIACAILFAA-ASVSAVMA-DEVAAPAPSPASGASASLPIVGSLVGASLASFIALY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 60

[Close]

BLAST of MELO3C009064T1 vs. TrEMBL
Match: F6HL55_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07980 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-09
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  IA  AS+S  +ASDE  SPAPGPS+   ATLPV+G+L+GAS  S  A+ 
Sbjct: 1  MDMKKISCAVLIAA-ASMSAAMASDEVMSPAPGPSNAAQATLPVLGSLVGASVLSFFAFY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064T1 vs. TrEMBL
Match: B9II47_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0016s05250g PE=4 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 9.3e-09
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M +K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLP VG+L+GAS  S  AY 
Sbjct: 11 MGLKKISCAVLV-VAASMSAALAADEVSAPAPSPTSGASATLPAVGSLIGASLVSFFAYY 70

Query: 61 LQ 63
           Q
Sbjct: 71 FQ 71

[Close]

BLAST of MELO3C009064T1 vs. TAIR10
Match: AT3G57690.1 (AT3G57690.1 arabinogalactan protein 23)

HSP 1 Score: 63.5 bits (153), Expect = 5.2e-11
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  AC    A  AS++ V+A++E  +PAPGP+S  SA LP +G+L+GAS  SL +Y 
Sbjct: 1  MEMKKIACGVLFAA-ASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064T1 vs. TAIR10
Match: AT2G41905.1 (AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1))

HSP 1 Score: 53.9 bits (128), Expect = 4.1e-08
Identity = 31/62 (50.00%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPS-SGVSATLPVVGTLLGASAASLIAY 60
          MEMK  AC    A  AS++ V+A+ E  +PAPGP+ SG S  +P +G+L+GAS  SL AY
Sbjct: 1  MEMKKIACGVVFAA-ASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAY 60

Query: 61 CL 62
           L
Sbjct: 61 YL 60

[Close]

BLAST of MELO3C009064T1 vs. TAIR10
Match: AT3G20865.1 (AT3G20865.1 arabinogalactan protein 40)

HSP 1 Score: 50.8 bits (120), Expect = 3.5e-07
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMKN   A FI+ V   S+  A+ E+ +P+PG SS  +   PVVG+++ AS ++ +A  
Sbjct: 1  MEMKNIFVALFISAVLVSSVSAATMESPAPSPGASSASTVAFPVVGSIVAASLSAFLALL 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of MELO3C009064T1 vs. NCBI nr
Match: gi|629125825|gb|KCW90250.1| (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M+MK  +CA  +A  AS+S VLASD++ +PAPGPSSG SA LPV G+L+GAS  S  AY 
Sbjct: 34 MDMKKISCAVLVAA-ASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

[Close]

BLAST of MELO3C009064T1 vs. NCBI nr
Match: gi|566174626|ref|XP_006381024.1| (hypothetical protein POPTR_0006s05490g [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          ME+K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLPVVG+L+GAS  S  AY 
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of MELO3C009064T1 vs. NCBI nr
Match: gi|224106059|ref|XP_002314029.1| (hypothetical protein POPTR_0009s06810g [Populus trichocarpa])

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-09
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  ACA   A  AS+S V+A DE A+PAP P+SG SA+LP+VG+L+GAS AS IA  
Sbjct: 1  MEMKKIACAILFAA-ASVSAVMA-DEVAAPAPSPASGASASLPIVGSLVGASLASFIALY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 60

[Close]

BLAST of MELO3C009064T1 vs. NCBI nr
Match: gi|566208812|ref|XP_002323305.2| (hypothetical protein POPTR_0016s05250g, partial [Populus trichocarpa])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          M +K  +CA  + V AS+S  LA+DE ++PAP P+SG SATLP VG+L+GAS  S  AY 
Sbjct: 11 MGLKKISCAVLV-VAASMSAALAADEVSAPAPSPTSGASATLPAVGSLIGASLVSFFAYY 70

Query: 61 LQ 63
           Q
Sbjct: 71 FQ 71

[Close]

BLAST of MELO3C009064T1 vs. NCBI nr
Match: gi|703130749|ref|XP_010104709.1| (hypothetical protein L484_000818 [Morus notabilis])

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1


Query: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60
          MEMK  ACA   A  AS+S V+A+D  A+PAP P+ G SA+LP +G+L+GAS  S +AY 
Sbjct: 1  MEMKKIACAVIFAA-ASVSAVMANDAVAAPAPAPTGGTSASLPALGSLVGASLVSFVAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

The following BLAST results are available for this feature:

BLAST of MELO3C009064T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP23_ARATH	9.2e-10	50.82	Arabinogalactan peptide 23 OS=Arabidopsis thaliana GN=AGP23 PE=2 SV=2	[more]
AGP40_ARATH	6.2e-06	41.94	Probable arabinogalactan protein 40 OS=Arabidopsis thaliana GN=AGP40 PE=2 SV=1	[more]

BLAST of MELO3C009064T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059DIY4_EUCGR	9.9e-11	59.68	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02403 PE=4 ...	[more]
U5G938_POPTR	8.4e-10	57.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s05490g PE=4 SV=1	[more]
B9HNM7_POPTR	5.5e-09	61.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06810g PE=4 SV=1	[more]
F6HL55_VITVI	7.1e-09	55.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07980 PE=4 SV=...	[more]
B9II47_POPTR	9.3e-09	53.23	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0016s05250g P...	[more]

BLAST of MELO3C009064T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G57690.1	5.2e-11	50.82	arabinogalactan protein 23	[more]
AT2G41905.1	4.1e-08	50.00	BEST Arabidopsis thaliana protein match is: arabinogalactan protein ...	[more]
AT3G20865.1	3.5e-07	41.94	arabinogalactan protein 40	[more]

BLAST of MELO3C009064T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|629125825\|gb\|KCW90250.1\|	1.4e-10	59.68	hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]	[more]
gi\|566174626\|ref\|XP_006381024.1\|	1.2e-09	57.38	hypothetical protein POPTR_0006s05490g [Populus trichocarpa]	[more]
gi\|224106059\|ref\|XP_002314029.1\|	7.8e-09	61.29	hypothetical protein POPTR_0009s06810g [Populus trichocarpa]	[more]
gi\|566208812\|ref\|XP_002323305.2\|	1.3e-08	53.23	hypothetical protein POPTR_0016s05250g, partial [Populus trichocarpa]	[more]
gi\|703130749\|ref\|XP_010104709.1\|	2.3e-08	54.10	hypothetical protein L484_000818 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C009064	MELO3C009064	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C009064T1	MELO3C009064T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009064T1.cds1	MELO3C009064T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672	FAMILY NOT NAMED	coord: 1..62 score: 2.3