MELO3C009040T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C009040T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	POU domain, class 3, transcription factor 4
Location	chr8 : 18507445 .. 18508261 (-)
Sequence length	483

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACTCGTCGAGGAACCCAAAGCATTTATGGACGAAGGCAGTGGAGTCATGTCTCGTTGATTGCCTCGTGGACTTGGTTAACATGGAGGGAGGGAGGGCGGTGGAGGTCAGATAATGTGACCTTTAGACCTGGTTACCTACCCCAGTTGGTGAGAATGATGGGCGAGAGGATGCCAGGTTGCACTTTGACGTCCATAACTGTAATCGAAAGCAAGACCAAGCTATTGAAAAGAACGATCATGGCCATTGTCGAAATTCAGGGACCGACGTGTAGTGGCTTTGGATAGCACTATGAGCTTAAGTGCATCATTGCAGCAAAGGACGTCTTCGATAGTTGGGCCAGAGTAAGAAATTTTATGAATTTTGTGTTTACATCGATCTAGTCAAATTGTGATTATGTTGTTTTAATTTTTCTTCATTTGTTTTTTTTTTTTTTGCAGACGCATCTTGCATGCAAAGGCCTGCTTAACAAGTTCCTCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACCGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCGAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTCGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCAATGACCAGCTCAGGGACATCGCATAA

mRNA sequence

ATGGCCAACTCGTCGAGGAACCCAAAGCATTTATGGACGAAGGCAGTGGAGTCATGTCTCGTTGATTGCCTCGTGGACTTGGTTAACATGGAGGGAGGGAGGGCGGTGGAGACGCATCTTGCATGCAAAGGCCTGCTTAACAAGTTCCTCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACCGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCGAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTCGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCAATGACCAGCTCAGGGACATCGCATAA

Coding sequence (CDS)

ATGGCCAACTCGTCGAGGAACCCAAAGCATTTATGGACGAAGGCAGTGGAGTCATGTCTCGTTGATTGCCTCGTGGACTTGGTTAACATGGAGGGAGGGAGGGCGGTGGAGACGCATCTTGCATGCAAAGGCCTGCTTAACAAGTTCCTCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACCGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCGAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTCGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCAATGACCAGCTCAGGGACATCGCATAA

Protein sequence

MANSSRNPKHLWTKAVESCLVDCLVDLVNMEGGRAVETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA*

Homology

[Close]

BLAST of MELO3C009040T1 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.6e-18
Identity = 61/124 (49.19%), Postives = 74/124 (59.68%), Query Frame = 1


Query: 38  THLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDME 97
           +H A KGLLNK  F HYDELSYVF KDR TG   E F DIGSN P   D   A+   D +
Sbjct: 466 SHPAAKGLLNKS-FVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTD 525

Query: 98  FPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVFRDAMHISNDQL 157
           FP M S  +N+S +D M  R +  +  R  SSGSKRKR G   ++ D+ R A+   N+QL
Sbjct: 526 FPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQL 585

Query: 158 RDIA 161
             IA
Sbjct: 586 HRIA 588

[Close]

BLAST of MELO3C009040T1 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.4e-02
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1


Query: 1   MANSSRNPKHLWTKAVESCLVDCLVDLVNMEGGRA 36
           M +SSR PKH WTK  E+ LV+CLV+LVN  G R+
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRS 390

HSP 2 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = 1


Query: 41  ACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGES-DGVQAEDGLDMEFP 100
           A KGLLN   FP+YDEL+YVF +DR TG   E F D+GSN PG   D     DG + +FP
Sbjct: 434 AAKGLLNN-PFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-NEDFP 493

Query: 101 TMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFE-TVDVFRDAMHISNDQLRD 160
            + S  +++  +D   +RPS ++  + GSSGSKRKR  Q +  V+    A+  +N+QLR 
Sbjct: 494 PVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQ 553

[Close]

BLAST of MELO3C009040T1 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-14
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 17  ESCLVDCLVDLVN-MEGGRAV----ETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASV 76
           E+ LV+CLV+LV+ M+  R +    +TH A KGLLNK LFP+YDEL YVFE+DR TG  V
Sbjct: 251 EATLVECLVELVSAMDESRTMGCSDQTHPAAKGLLNK-LFPYYDELVYVFERDRVTGQGV 310

Query: 77  EMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVS 110
           + F ++ SN P E +G Q  D  DM+ PTM S   N+S
Sbjct: 311 KTFVNVESNDPIEYEGFQTPDENDMKNPTMYSQGFNMS 347

[Close]

BLAST of MELO3C009040T1 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 43/79 (54.43%), Postives = 48/79 (60.76%), Query Frame = 1


Query: 36  VETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLD 95
           V T+ A KGLLNK +FPHY  LSYVF KD T G         G      S  V  EDGL 
Sbjct: 56  VRTYPATKGLLNK-VFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLK 115

Query: 96  MEFPTMCSLRMNVSLEDRM 115
           +EFPTMCS RMN+SL+D M
Sbjct: 116 IEFPTMCSPRMNLSLDDMM 133

[Close]

BLAST of MELO3C009040T1 vs. TrEMBL
Match: A0A0A0L3I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1


Query: 65  RTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGARPSMSTVD 124
           R T  SV  +  +GSNV G  +G  ++DG DMEFPTM S R+++S ++ M  R S +   
Sbjct: 29  RQTRISVHSYR-VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDR 88

Query: 125 RMGSSGSKRKRRGQ-FETVDVFRDAMHISND 155
           R  SS SKRK RGQ  ET  + R+ +   N+
Sbjct: 89  RNASSKSKRKWRGQSIETAHILRNVIEYDNE 117

[Close]

BLAST of MELO3C009040T1 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 75/194 (38.66%), Postives = 100/194 (51.55%), Query Frame = 1


Query: 1   MANSSRNPKHLWTKAVESCLVDCLVDLVNMEGGRA------------------------- 60
           MA+SSR  KH WTK  E+ LV+CLV+LV+  G R+                         
Sbjct: 1   MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61  --------VETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGE-SD 120
                     +H A KGLL+K  FP+YD+LSYVF  D  TGA  E F D GSNV    +D
Sbjct: 61  IQGSPTIDCRSHPAAKGLLHKS-FPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFND 120

Query: 121 GVQAEDGLDMEFPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVF 160
           GV   D  + +  T+ S  +++SL++  G R   ++  R  SSGSKRKR  + +E V+V 
Sbjct: 121 GVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVI 180

[Close]

BLAST of MELO3C009040T1 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 58/124 (46.77%), Postives = 73/124 (58.87%), Query Frame = 1


Query: 38  THLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDME 97
           +H A KGLLNK  FPHYDELSYVF KD  TG   E F D+GSN P   D   A    D +
Sbjct: 60  SHPAAKGLLNKS-FPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTD 119

Query: 98  FPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVFRDAMHISNDQL 157
           F  M S  +N+S ++ MG R +  +  R  SSGSK+KR G   ++ D+ R A+   N+QL
Sbjct: 120 FQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQL 179

Query: 158 RDIA 161
             IA
Sbjct: 180 NRIA 182

[Close]

BLAST of MELO3C009040T1 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 55/98 (56.12%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 36  VETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLD 95
           V  H   K LLNK  FP+YDEL+YVF+KDR TG  VE FTDIGSN P   +G Q  DG D
Sbjct: 29  VRIHPVAKALLNKS-FPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGND 88

Query: 96  MEFPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKR 134
           ME PT+ S   N+S ED    RPS ++  R  SSGSKR
Sbjct: 89  MEIPTIYSQGFNMSQEDVWAPRPSSASDSRTRSSGSKR 125

[Close]

BLAST of MELO3C009040T1 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 60/124 (48.39%), Postives = 73/124 (58.87%), Query Frame = 1


Query: 38  THLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDME 97
           +H   KGLLNK  F HYDELSYVF KDR TG   E F DIGSN P   D   A+   D +
Sbjct: 452 SHPTAKGLLNKS-FVHYDELSYVFGKDRATGGRAESFADIGSNHPAGYDAFPADAAPDTD 511

Query: 98  FPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVFRDAMHISNDQL 157
           FP M SL +N+S +D M  R +  +  R  SSGSKRK  G   ++ D+ R A+   N+QL
Sbjct: 512 FPPMYSLGLNMSADDLMETRTARVSERRNVSSGSKRKHPGHATDSGDIVRTAIKYGNEQL 571

Query: 158 RDIA 161
             IA
Sbjct: 572 HRIA 574

[Close]

BLAST of MELO3C009040T1 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 42.4 bits (98), Expect = 9.0e-01
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1


Query: 1   MANSSRNPKHLWTKAVESCLVDCLVDLVNMEGGRA 36
           M +SSR  KH WTK  E+ LV+CLV+LVN  G R+
Sbjct: 342 MTSSSRLSKHTWTKEEEAGLVECLVELVNAGGWRS 376

HSP 2 Score: 99.0 bits (245), Expect = 8.1e-18
Identity = 61/124 (49.19%), Postives = 74/124 (59.68%), Query Frame = 1


Query: 38  THLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDME 97
           +H A KGLLNK  F HYDELSYVF KDR TG   E F DIGSN P   D   A+   D +
Sbjct: 466 SHPAAKGLLNKS-FVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTD 525

Query: 98  FPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVFRDAMHISNDQL 157
           FP M S  +N+S +D M  R +  +  R  SSGSKRKR G   ++ D+ R A+   N+QL
Sbjct: 526 FPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQL 585

Query: 158 RDIA 161
             IA
Sbjct: 586 HRIA 588

The following BLAST results are available for this feature:

BLAST of MELO3C009040T1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	5.6e-18	49.19	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	7.4e-02	60.00	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5Y732_CUCME	1.0e-14	52.04	Transposase OS=Cucumis melo PE=4 SV=1	[more]
A0A0A0KQ83_CUCSA	5.1e-11	54.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1	[more]
A0A0A0L3I2_CUCSA	3.8e-06	42.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1	[more]

BLAST of MELO3C009040T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113923\|ref\|XP_008456820.1\|	1.3e-20	38.66	PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo]	[more]
gi\|659123900\|ref\|XP_008461893.1\|	1.2e-18	46.77	PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo]	[more]
gi\|659068476\|ref\|XP_008444620.1\|	1.2e-18	56.12	PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo]	[more]
gi\|659126986\|ref\|XP_008463462.1\|	1.6e-18	48.39	PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo]	[more]
gi\|659126986\|ref\|XP_008463462.1\|	9.0e-01	57.14	PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C009040	MELO3C009040	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C009040T1	MELO3C009040T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009040T1.cds2	MELO3C009040T1.cds2	CDS
MELO3C009040T1.cds1	MELO3C009040T1.cds1	CDS