MELO3C009040 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C009040
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPOU domain, class 3, transcription factor 4
Locationchr8 : 18507445 .. 18508261 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACTCGTCGAGGAACCCAAAGCATTTATGGACGAAGGCAGTGGAGTCATGTCTCGTTGATTGCCTCGTGGACTTGGTTAACATGGAGGGAGGGAGGGCGGTGGAGGTCAGATAATGTGACCTTTAGACCTGGTTACCTACCCCAGTTGGTGAGAATGATGGGCGAGAGGATGCCAGGTTGCACTTTGACGTCCATAACTGTAATCGAAAGCAAGACCAAGCTATTGAAAAGAACGATCATGGCCATTGTCGAAATTCAGGGACCGACGTGTAGTGGCTTTGGATAGCACTATGAGCTTAAGTGCATCATTGCAGCAAAGGACGTCTTCGATAGTTGGGCCAGAGTAAGAAATTTTATGAATTTTGTGTTTACATCGATCTAGTCAAATTGTGATTATGTTGTTTTAATTTTTCTTCATTTGTTTTTTTTTTTTTTGCAGACGCATCTTGCATGCAAAGGCCTGCTTAACAAGTTCCTCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACCGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCGAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTCGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCAATGACCAGCTCAGGGACATCGCATAA

mRNA sequence

ATGGCCAACTCGTCGAGGAACCCAAAGCATTTATGGACGAAGGCAGTGGAGTCATGTCTCGTTGATTGCCTCGTGGACTTGGTTAACATGGAGGGAGGGAGGGCGGTGGAGACGCATCTTGCATGCAAAGGCCTGCTTAACAAGTTCCTCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACCGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCGAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTCGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCAATGACCAGCTCAGGGACATCGCATAA

Coding sequence (CDS)

ATGGCCAACTCGTCGAGGAACCCAAAGCATTTATGGACGAAGGCAGTGGAGTCATGTCTCGTTGATTGCCTCGTGGACTTGGTTAACATGGAGGGAGGGAGGGCGGTGGAGACGCATCTTGCATGCAAAGGCCTGCTTAACAAGTTCCTCTTCCCCCATTACGATGAGTTGTCGTATGTCTTTGAGAAAGACCGCACCACGGGGGCCAGTGTAGAGATGTTCACTGATATAGGGTCGAATGTGCCAGGCGAAAGTGATGGAGTTCAAGCAGAAGATGGGTTGGATATGGAGTTCCCTACTATGTGCAGCCTGAGAATGAATGTGTCACTCGAGGACAGGATGGGTGCACGACCTAGTATGTCCACTGTCGATAGGATGGGTTCGAGTGGATCAAAGAGGAAGCGCAGAGGGCAGTTTGAGACTGTGGATGTTTTTCGCGATGCCATGCACATTTCCAATGACCAGCTCAGGGACATCGCATAA

Protein sequence

MANSSRNPKHLWTKAVESCLVDCLVDLVNMEGGRAVETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFETVDVFRDAMHISNDQLRDIA*
Homology
[Close]
BLAST of MELO3C009040 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.6e-18
Identity = 61/124 (49.19%), Postives = 74/124 (59.68%), Query Frame = 1 

Query: 38  THLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDME 97
           +H A KGLLNK  F HYDELSYVF KDR TG   E F DIGSN P   D   A+   D +
Sbjct: 466 SHPAAKGLLNKS-FVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTD 525

Query: 98  FPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVFRDAMHISNDQL 157
           FP M S  +N+S +D M  R +  +  R  SSGSKRKR G   ++ D+ R A+   N+QL
Sbjct: 526 FPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQL 585

Query: 158 RDIA 161
             IA
Sbjct: 586 HRIA 588

[Close]
BLAST of MELO3C009040 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.4e-02
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 

Query: 1   MANSSRNPKHLWTKAVESCLVDCLVDLVNMEGGRA 36
           M +SSR PKH WTK  E+ LV+CLV+LVN  G R+
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRS 390


HSP 2 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = 1 

Query: 41  ACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGES-DGVQAEDGLDMEFP 100
           A KGLLN   FP+YDEL+YVF +DR TG   E F D+GSN PG   D     DG + +FP
Sbjct: 434 AAKGLLNN-PFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDG-NEDFP 493

Query: 101 TMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQFE-TVDVFRDAMHISNDQLRD 160
            + S  +++  +D   +RPS ++  + GSSGSKRKR  Q +  V+    A+  +N+QLR 
Sbjct: 494 PVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQ 553

[Close]
BLAST of MELO3C009040 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-14
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1 

Query: 17  ESCLVDCLVDLVN-MEGGRAV----ETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASV 76
           E+ LV+CLV+LV+ M+  R +    +TH A KGLLNK LFP+YDEL YVFE+DR TG  V
Sbjct: 251 EATLVECLVELVSAMDESRTMGCSDQTHPAAKGLLNK-LFPYYDELVYVFERDRVTGQGV 310

Query: 77  EMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVS 110
           + F ++ SN P E +G Q  D  DM+ PTM S   N+S
Sbjct: 311 KTFVNVESNDPIEYEGFQTPDENDMKNPTMYSQGFNMS 347

[Close]
BLAST of MELO3C009040 vs. TrEMBL
Match: A0A0A0KQ83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 43/79 (54.43%), Postives = 48/79 (60.76%), Query Frame = 1 

Query: 36  VETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLD 95
           V T+ A KGLLNK +FPHY  LSYVF KD T G         G      S  V  EDGL 
Sbjct: 56  VRTYPATKGLLNK-VFPHYGMLSYVFGKDHTKGPVWRYSRTSGPTCKDPSACVPTEDGLK 115

Query: 96  MEFPTMCSLRMNVSLEDRM 115
           +EFPTMCS RMN+SL+D M
Sbjct: 116 IEFPTMCSPRMNLSLDDMM 133

[Close]
BLAST of MELO3C009040 vs. TrEMBL
Match: A0A0A0L3I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 1 

Query: 65  RTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGARPSMSTVD 124
           R T  SV  +  +GSNV G  +G  ++DG DMEFPTM S R+++S ++ M  R S +   
Sbjct: 29  RQTRISVHSYR-VGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETR-SRAGDR 88

Query: 125 RMGSSGSKRKRRGQ-FETVDVFRDAMHISND 155
           R  SS SKRK RGQ  ET  + R+ +   N+
Sbjct: 89  RNASSKSKRKWRGQSIETAHILRNVIEYDNE 117

[Close]
BLAST of MELO3C009040 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 75/194 (38.66%), Postives = 100/194 (51.55%), Query Frame = 1 

Query: 1   MANSSRNPKHLWTKAVESCLVDCLVDLVNMEGGRA------------------------- 60
           MA+SSR  KH WTK  E+ LV+CLV+LV+  G R+                         
Sbjct: 1   MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61  --------VETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGE-SD 120
                     +H A KGLL+K  FP+YD+LSYVF  D  TGA  E F D GSNV    +D
Sbjct: 61  IQGSPTIDCRSHPAAKGLLHKS-FPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFND 120

Query: 121 GVQAEDGLDMEFPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVF 160
           GV   D  + +  T+ S  +++SL++  G R   ++  R  SSGSKRKR  + +E V+V 
Sbjct: 121 GVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVI 180

[Close]
BLAST of MELO3C009040 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 58/124 (46.77%), Postives = 73/124 (58.87%), Query Frame = 1 

Query: 38  THLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDME 97
           +H A KGLLNK  FPHYDELSYVF KD  TG   E F D+GSN P   D   A    D +
Sbjct: 60  SHPAAKGLLNKS-FPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTD 119

Query: 98  FPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVFRDAMHISNDQL 157
           F  M S  +N+S ++ MG R +  +  R  SSGSK+KR G   ++ D+ R A+   N+QL
Sbjct: 120 FQPMYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQL 179

Query: 158 RDIA 161
             IA
Sbjct: 180 NRIA 182

[Close]
BLAST of MELO3C009040 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 55/98 (56.12%), Postives = 63/98 (64.29%), Query Frame = 1 

Query: 36  VETHLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLD 95
           V  H   K LLNK  FP+YDEL+YVF+KDR TG  VE FTDIGSN P   +G Q  DG D
Sbjct: 29  VRIHPVAKALLNKS-FPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGND 88

Query: 96  MEFPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKR 134
           ME PT+ S   N+S ED    RPS ++  R  SSGSKR
Sbjct: 89  MEIPTIYSQGFNMSQEDVWAPRPSSASDSRTRSSGSKR 125

[Close]
BLAST of MELO3C009040 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 60/124 (48.39%), Postives = 73/124 (58.87%), Query Frame = 1 

Query: 38  THLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDME 97
           +H   KGLLNK  F HYDELSYVF KDR TG   E F DIGSN P   D   A+   D +
Sbjct: 452 SHPTAKGLLNKS-FVHYDELSYVFGKDRATGGRAESFADIGSNHPAGYDAFPADAAPDTD 511

Query: 98  FPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVFRDAMHISNDQL 157
           FP M SL +N+S +D M  R +  +  R  SSGSKRK  G   ++ D+ R A+   N+QL
Sbjct: 512 FPPMYSLGLNMSADDLMETRTARVSERRNVSSGSKRKHPGHATDSGDIVRTAIKYGNEQL 571

Query: 158 RDIA 161
             IA
Sbjct: 572 HRIA 574

[Close]
BLAST of MELO3C009040 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 42.4 bits (98), Expect = 9.0e-01
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 

Query: 1   MANSSRNPKHLWTKAVESCLVDCLVDLVNMEGGRA 36
           M +SSR  KH WTK  E+ LV+CLV+LVN  G R+
Sbjct: 342 MTSSSRLSKHTWTKEEEAGLVECLVELVNAGGWRS 376


HSP 2 Score: 99.0 bits (245), Expect = 8.1e-18
Identity = 61/124 (49.19%), Postives = 74/124 (59.68%), Query Frame = 1 

Query: 38  THLACKGLLNKFLFPHYDELSYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDME 97
           +H A KGLLNK  F HYDELSYVF KDR TG   E F DIGSN P   D   A+   D +
Sbjct: 466 SHPAAKGLLNKS-FVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTD 525

Query: 98  FPTMCSLRMNVSLEDRMGARPSMSTVDRMGSSGSKRKRRGQ-FETVDVFRDAMHISNDQL 157
           FP M S  +N+S +D M  R +  +  R  SSGSKRKR G   ++ D+ R A+   N+QL
Sbjct: 526 FPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQL 585

Query: 158 RDIA 161
             IA
Sbjct: 586 HRIA 588

The following BLAST results are available for this feature:
BLAST of MELO3C009040 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB5_CUCME5.6e-1849.19Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME7.4e-0260.00Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5Y732_CUCME1.0e-1452.04Transposase OS=Cucumis melo PE=4 SV=1[more]
A0A0A0KQ83_CUCSA5.1e-1154.43Uncharacterized protein OS=Cucumis sativus GN=Csa_5G387990 PE=4 SV=1[more]
A0A0A0L3I2_CUCSA3.8e-0642.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1[more]
BLAST of MELO3C009040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113923|ref|XP_008456820.1|1.3e-2038.66PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|1.2e-1846.77PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|659068476|ref|XP_008444620.1|1.2e-1856.12PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
gi|659126986|ref|XP_008463462.1|1.6e-1848.39PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo][more]
gi|659126986|ref|XP_008463462.1|9.0e-0157.14PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009040T1MELO3C009040T1mRNA