MELO3C008876T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C008876T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Locationchr8 : 23212026 .. 23219900 (+)
Sequence length1626
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACACTTCTAGGTAGTTTTTAAGTTGGTTTGAGGGTGAAATTGTTGTTGAAGTAATTTTGAGACTTGAAATGCTACTTTCACACATTTTAAAAACCTTTTAGGTTGGCATTGAGTTTGAAAGTCAAACTTAGGAATTTTTAGGTTGGTTTTGGTTTTCACCTTGAAAGTCTCATTTAGGCATTTTAAAGATACGTTGATAGTTAAAGTAACACTTAGACACTTATTGGGTACTTTTTAGATTGATTTGAAAGTAAAATTGATATTTTGAAGTAATATTTGAGATTTGGAGTGCTACTTTCACAAAAGCCCATGGGATGTCTCGAATCCGAAGCAGCCACCAAGCAAATCCCTAACCCAAGTTGGAGTGCCCGAATCCAACCCTAGCCTGCCCGATTTCCTTCCGTTCTTTTCCTCTATGTAGATCATCCTACCGTTTCCCAGATTTCCGACCACAAACACCTTCCTATCTATTTTGAACTTTCCCATCTCGTAGCTTTCCTTACAGTTTTTGAGAGAAAAGTTAGAGAGAGAATAGGGAATCTACTTTTTTGAGGATCTATATTGTTCATCGTTAATGCCTTCACAATCTATTGGATGTGGCAGAAACCTTAAACCTGGTTTTTTGGTGAAGAGATCCTTGTAATAACGGATGAATTCAGCTTTAATTGAGATGTTGACGTTTATTACTTATTAGGACACAGGTTTGTTTACCATTTTTAAATTTTTAATTTTGTTCAAAAGATTAGTTTGTTTAAATTTCTTATTGCTATGTGATTTATCACAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGGTTGGAATTACTTTCAATATCACAAACGTTTTGTTTCTAGTTCTTTGCATGGTCTTTATTGCAGCACGGCGTTGATATAATTTTTTGGCCAACATTTGTGTTTCATTCCTGCAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGTGAGCCCTCTGTTTAGATAGGTTTATTTTGCGTTGGGAGTCTGTGTTTAATGACGTTTGTACTTATTCAGTGGGTTTCATTCTTAATCGTTTTATTTCTCAATACGTTAGGATCTGTTGGTTCCTTCTGTGCTGCCACTTTTGTATGTCGAACTTTTTCTCTGTTGCAATTGTTTATTTATTTATTTTTATTTTGGTCGACCCTACTTTCTCCCATTTCTTTTCTCTCCATGAAAGTACGGTTTCTTCAGGGAAGTCACTTTTGTATGTAAATTTGAAAGTTTGGTTCTTTGATTCAATGATCTTTCAAGTTTTTAGGTTTAAGGGCTCTAGCAAACATCCTTGAACTATTATTGCTTGAGGTTTTCCCTAGTTTTCTTTTTCTGTTTCCTTTTTTTTTACTTTTTATAAAAGGTTTTCCTTTGTTTTCTTAGTTTGTTAACTGTTTGATGGGGGATGGTGCTAACCGTTAGAATTAGTGGGCTTGGCCCTTAGAGGAGTATTTATGGAAAGATTATGGGAAGACTTACCCTATTTCCTAAATGTTTTCCTTTTTTATTCTATTGTGTATTCTATTTATTCTCCCTTAGTGTACCTATAATTTATCAGAAAATAGTAAAACAACAATATCGTGGTTTTCCTCCTAGTACTCGAGTTTCCACGTAAGTCTTGGTTTTGTGTTTATTGCTTTTAATATGGTATTAGAGCAGGTGGTCCAGGAGGCCCTGTGTTCAAGCCCCTGCATTGTTGTTTTCTCCCCAACTAAAATTGATCTCCACTTGTTGGGCCTTCCAAATATTTCAAGCCTCCAAATGAGGAAGAGTGTTAGTGATATATAATTAAATTTGCCTTCAACTACTAGCTTAAGCTTTTGGATGAACTGGTGGCTTCATACAAACAATTATATTTTGGAGGATAGTTGGGAGAAGAAAAGCCCGTTTATGCCGCTTTCCTCGGCTCTATCACTTGTTAGATAGAGAATGCACTCGATATCCTTTGTTTTGCCCTCTTTTGTTATTTTCTTCTTGTTGCCCCTTCATACCCTTACTGACCAAGAGGCAGTTGAGGTAGTTGGCCTTTGTCTTCTTTCTATTGTTCCCAAAAAAAAAAAAGGTGTTTCAACAAGTGTTCCATCATGGATGAAGGGATTCCAAATTTTGGGCTTCCAAGCCATCTAAGGGTTTCTCTTGTAACACTTTTTTTCATATGTTCTTTGCTCCTTCCTCTCAGTTTGGGTGCGTTTGCATTCTCCTCTCTTTGGCTGGCTAAAACTCTAAAATGTTGAAGTCTTTGTTTGGCAAGTTCTGGATGGGAAAGTAAACACACAAGATCATCTACAAAGACATTCATCATTCACTCTATTGCAATAGTATATTTTTTGTTGCAAGGAGGATGACCTTGAATATCTTTGAGTCTTTGTCTTCTTTTTTTTCTATTTATTTTTTTTATGAGTATCTTGTCTAGCTTACGCATGCTGAATAATCTTGTGAGACAACCTGCCTAATCCTACAGTATTTGGATAGAGGAACAATACGATTTTTAGAGGGTCTTGTGCAGTGTAGTTGGGGTATTTTTGCTACAACCCAACTAAACTCGTGGGATATTAAACCTTCAGTAGGTGAATATCATGGATTGAGCCTATGACCTCTTAGCCTTAGAAGCATCTCGCGGCATAGTTGTTTTTGTCCATTTTGTGGGAATTTAGATAGAGGAACAATAGGATTTTTAGAGGGTCTAAAAGATATGGAGATGAGCCCTGTGTGGGTGTTTGTTTGGTTTAATTCCTCATTATGGGTGTCTAATATTCAAGCTTTTTGTAATCGCCAGCATGATTTGATTCTTTTCGATTGAAATCCTTTCTTGTTGTTGAGATGAGGCTGTTTTCTTTTTTATTTGTTTTTTGTGGTATGCCCTTTACCTTCATTCTTCTCGATAAAAGCTTGGTTTCTTATATAAAAAGGAGGAAAAAAAAATGTTTTTTATGGCAAGGCCTCATTGTATAATTTCATTATTCTAACAATTCAAGAATGTAATAGATTTTCTTTTTCATGGTAACTTAACTGGAAATTATCATGGAAAGCTTACATTTAAGGAATGTTATTATAATAAATTTATTCCTCTTATAGTCTAGAATTGGGGAAATCTAACAAAGGAGGAAGAGTGGAGGAGTAAGGTAAGTATGCTCTCTCCTCTCTCCTCTCTTTGCTGCCTTCTCCTTTGATTTTCTGTACCTCTTCGGTGATTTCTCTAGCATCTTCTTCAATCCTCAGCTTCACTTTTAGTCTTCTCTGGGGTTTCTTTGGCTTAGTTCTTGCTCATGGAAGTAGCAAGTTGCAAAATACTTCATACACACTTTTGCATTTGGCTGGAAAACGACCACTTTCATGTGGAGGATGTGGAAGCTCAACGATCCCTAGTTGTCTCAAAAGCCCATCTGAATTGGTTCCGTGCAGCGATAGCAAAGTTAGTCAGGCCTCGAAGGATCGGTTCTTTCTAAATTTCAAGGAGTTAGACAATGGGGGAACGGAGATCTCAAAGTTCAGATCCGACATTGGCTGGGTTTAATGTTGCTATTTCTGGCCGGTTTCAGGTGGGCGTCAAACCATCAGGGTTTCTTCAGAGGAAGACAAAAAGGGGTGGTCGTCCTTCCTCCAGATGTTGGAACAGTTCTTATCAAACTTGAAGCATAAGAAATGGTTCTCGAGGCATCGCCTTCCAACTCAAATCCCTCCATAGTTCCAAAAGATCGTTAATAGAGAGTTAAGACCTGGGTTTTTCAGCTAATGATCAGAAGTTAGGAAACCTGAGCCATAGCAAAGGAAAGCTTGAATCCTTACAGCCCTCCCCTGTTTTGAAGTTGGGGATTTAGAACCCCTCGGTCTTTGTTTGAGCACCAGCAAAACAGAGCGTTCACTCGGGTCATTTGCATTTCCACCACTTGAGTAGCTGACCTCTCCTTATTGGGTGAAATCTTGAGGAAGATTTCAGCACTCTGGATCATTTCCAAGCTCTTTGTATATAATGATTGGAAGGATATTGTCAAAACTCTGGAGGCTCACTTTCAAGACAAAATCAGCTTCAATCCTTTGTATGCTGATAAGGCATTAATCCGCCTCTCTCGAAGGAATCTGGAAGATTTGGTTGAGACTCCCGGTAAATGCCAGCGTATTGGAATCTTCCATCTTTTAGTAAAAAAATTGGAACAAGTTCAAACATGGCAGGCCAAAAATTATTTGAGGTTTTGAAGGGTGGTTATCCACAACAACTTACCGTTAGATTATTGGAAAAAGGATGTCTTTGTTGCAATTGGGAATTATTTTAGTGGCCTCGAGAGCATATCCTTGGATACATTGAATATGATTAATGTGTCTAAAGCTAAAATTAAGGTGAAGGAAAATCTTTGTGGTTTTTTACCGATAACAATCCAATCGAAAGATGATTTTTGTGGAAAATCTTATCTTAACTTTTGAGATATTGAAATTATTGAAGAGCCTTCGGCCGTTCAAGATGCCATCTCTATTAAGTATTTCTCAAATCTGCAAGAATTGATCTCGTCTTAAAAGATGAAGGGCTAGATTTTAATGTTTCCAACCAGGAATGGGATTCAATTCGTTTCTTTCAAAGTCAAGCTTCTCAAGGAACCCATGCATTGAATTCAATAGTAATCCTAGCCTAGCTTTACCGATCGAGGCTCCTTGCTCATTTTGTCGGAATCTTCCTCCTGCTGCAGTAAATTTGGTTAATCAATTCAAATTCGGAGGGAACTTGATTGGAAAAGGCAAAGAGTAGCCTTCTCATAAGAGAGAAAAATGCGGCTGAATCCTTTGCTTTGCCCAATAAGAATCCATGTGCCACACATCCTTTAACCAAGCAATTAAACTCCTCTCAGATTAATTCGGCTGACATCTTTTTAAAAAATGGACAGATGGCATCCTCTTACACGTTAGATGCTAAAAAACCTGCAAAATTTTAGCAGTTGCTCATTGGGCGTAAGAACTTTTAGTTCCCTCTTCAACGGATGCTCCAGAAACCTTTAAAATACCTTCAAAGCATGCTCGTTTCAACTCCGCATCTTTTAATTCTCTCTTATCTTCTTCTCTCCATTCCTCATTAAAGTCAGGCCCAAGAGAAAGATTGAAAAAAAAGAAAATGTTAGAAAATCTTCCCACATTACCTCAAGCCCTTCCCAAAGTTTTTCATCCGAAAGAAAAAATCTAAGAATTTTTAGGCCAAACAATCTTTAAAAGCCCAGATACTTGAAGATCAAGCTCTTGATTTGATAAAGGCAATCTGCGCCCACTCTCATTCCTCAGTCCAATCCAGCAGATCCAAGTTGTTTTTGAAGGCTAATCCAGATTTGTTGAAAGTTAGTTGTACCCAGATTCTAGCTCCAACCTGTTCTACTAATTCAATTGGTCATGATTCTCACCCTACGTAGTTTAAATATTTAGAGTTCTATTTGCCCCAACGGGAAGGTAAAACTTTTTAGGGCTCTCTAAGCAAAACCCTTATCAATCCCTCTAGAAAGAAGGGCGAGTCTTCCTTTGACTCTTCTTTCGGCATTAGCAATGAGGAATTGGAGTTTTCTGCTAAGTCATCCAAGTTTGAGAGGCAAAAGCATTATGAGCCTTTAGAAACAGATCTTAATGCACTGTTTCATTGCAAGGAAGACTTGAAATCTGAAAATTTGCCGTTTGCTACCCGCTGTGCCCAGCTTGCGAAATACCAGATCATCTAAAGTCAATAGTTGTCGACTGTGAAATTATTCTAATTTGATTCTTTAGATACTTAAATGTAAGTTTCTCAAAAGCTTGGTCCAGTTTCTGGCTTTCCTTAATTTCTCTTCATGTGGGTGGCAAGTAAAATCGCACTGATTGTGGTAGATGACTTGAGATTGGTGGTCTTGATCTTTGTTTCTTTGGCCTGCCAAAGGGAAGTAACTTCTGGGGTTTGTTTTTTGAAATAATGGCTGATGGTATTGAAAACTTCTTCGAGCTTCCTCTGGATTCAGTTTATATTGGCAAGACAGATTTGAGGCAATTGTTTGCATCTTCTAGGCGACTCTCTCTCCAATCATTTTGAAGATTTTGGTTTGCTAGTTTTCAGTTTCAAATGGGTTCCTTACGAGAGAACTTTAAGTTTTGCTTTGTATTTTGCTTTCTACGTTTGTTTTATCTTTGAGTCGTTTGTTTTAATTTGTTTAGATTCCATTGAAATTCGTTTTTAGGTTGCCTTCTTTTTGTTAGCCTAAGCTAGCTTCGGGTTTAGTCTTGACTGTATTCTTTTAGTTTGTCTTTGTATAATACTCTTGTATTTTGAGCTTAGGTCTCATTTATTATCATTAATAAAGATACTTGTCTCTGCTTAAAAAAAAGTCTAGAATCCAGATAAAAGTTTATTACAAATAGTATTCTTGCTTGTATCTGGTTTCTTCCTGGAAAAACGTGGAATGATTGTGTTAAGAGTATTACTGGTAACATACTAACCCTAAAATCAGTTCCTAATTCTTCTTCACTAGGAACATACTGGGATACTATTAGACACTTAATGCTTTGTTATTTTGTCGTTAGTTTGTTAGGGTGAGTTGGGATATTTTTGCTGATTGATATTAACTTTTTACCATCTAGTTCTCAGAATCAGGATCCTACCCTAACAGATCCTAGGGAAGAATTAAAAGATTAATGTTTTGTGGTTGGTATGCTAATTTTTTATATTGTTAAAGATGGAGCATCATGATCAGGATTTGGTAACCTCCGATATTTAATTTTAAGTGAAGAGTATGTCTGGATATATTTTCTTTTTAAGATTCCCCAACTCTCTAGTCTCAATTAGTTCAAATAGTTATCTAATTGATGACTACCTGTCCAAAATATTTTTTAAAAATCTTGAAAGCACTCCCCTCTCTCCTTTTTCAAGTTTATAATAGGTGTTTCTTTTTCACTAGTAAAGTTCATTTGAAATTGTCTCAATGCAATCCTGTATTTCACCTAAAGCTCTTTGCACTATATCTGAGGAATAACGTGACACATTTTTATTACTTCCTTGAAATCAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGAGTCACATGTCCTAGTGAGCTTCTAATCTATCTCTGCCACTTTCCCCATTTGTAGAAACGAAAGGTTGAACGAGAACTTCAGTCATGTATGTATATAATCTATCTCTAGTTGAGCTGATAGCATCCACTTTTGAATGTTGATTCATACAAAGATTCTACTATACAGTATATCTGTTTTATTATCCTATCATCTGTGTTTTTTAGTATCAATTTCGAGAAGGTGACAAATCCAAATCCAGGTAGATCTTCTATCTCAAGGGATGTAAACTATTCCTTGTTTTTTCTTTAATCTATGGCCTTTTCTGTACTTTGGCATGGACCATATCACATTGGCTGTATACATTTTCTTCCTTTTGTTTTTGTCATAGAGACTGTCACCTTCTCAATAGTAAACGGTTGTTTTTCTGGTTTATTTGGAACTATTGGGCTGTTTGGTGAACCGTGATGGAATGAGTTTGCAATGTAATATACTCGAAAACTCTATGTTTGGATTAGGTGTATTGGGCTTGATTTGTAATACTAAACTTATTCCATTCTGACAGTTTTCAATCC

mRNA sequence

AGACACTTCTAGGTAGTTTTTAAGTTGGTTTGAGGGTGAAATTGTTGTTGAAGTAATTTTGAGACTTGAAATGCTACTTTCACACATTTTAAAAACCTTTTAGGTTGGCATTGAGTTTGAAAGTCAAACTTAGGAATTTTTAGGTTGGTTTTGGTTTTCACCTTGAAAGTCTCATTTAGGCATTTTAAAGATACGTTGATAGTTAAAGTAACACTTAGACACTTATTGGGTACTTTTTAGATTGATTTGAAAGTAAAATTGATATTTTGAAGTAATATTTGAGATTTGGAGTGCTACTTTCACAAAAGCCCATGGGATGTCTCGAATCCGAAGCAGCCACCAAGCAAATCCCTAACCCAAGTTGGAGTGCCCGAATCCAACCCTAGCCTGCCCGATTTCCTTCCGTTCTTTTCCTCTATGTAGATCATCCTACCGTTTCCCAGATTTCCGACCACAAACACCTTCCTATCTATTTTGAACTTTCCCATCTCGTAGCTTTCCTTACAGTTTTTGAGAGAAAAGTTAGAGAGAGAATAGGGAATCTACTTTTTTGAGGATCTATATTGTTCATCGTTAATGCCTTCACAATCTATTGGATGTGGCAGAAACCTTAAACCTGGTTTTTTGGTGAAGAGATCCTTGTAATAACGGATGAATTCAGCTTTAATTGAGATGTTGACGTTTATTACTTATTAGGACACAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGAGTCACATGTCCTAGTGAGCTTCTAATCTATCTCTGCCACTTTCCCCATTTGTAGAAACGAAAGGTTGAACGAGAACTTCAGTCATGTATGTATATAATCTATCTCTAGTTGAGCTGATAGCATCCACTTTTGAATGTTGATTCATACAAAGATTCTACTATACAGTATATCTGTTTTATTATCCTATCATCTGTGTTTTTTAGTATCAATTTCGAGAAGGTGACAAATCCAAATCCAGGTAGATCTTCTATCTCAAGGGATGTAAACTATTCCTTGTTTTTTCTTTAATCTATGGCCTTTTCTGTACTTTGGCATGGACCATATCACATTGGCTGTATACATTTTCTTCCTTTTGTTTTTGTCATAGAGACTGTCACCTTCTCAATAGTAAACGGTTGTTTTTCTGGTTTATTTGGAACTATTGGGCTGTTTGGTGAACCGTGATGGAATGAGTTTGCAATGTAATATACTCGAAAACTCTATGTTTGGATTAGGTGTATTGGGCTTGATTTGTAATACTAAACTTATTCCATTCTGACAGTTTTCAATCC

Coding sequence (CDS)

ATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGA

Protein sequence

MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS*
Homology
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BLAST of MELO3C008876T1 vs. Swiss-Prot
Match: MED11_ARATH (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.7e-45
Identity = 83/111 (74.77%), Postives = 99/111 (89.19%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of MELO3C008876T1 vs. TrEMBL
Match: A0A0A0L450_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.3e-56
Identity = 115/140 (82.14%), Postives = 117/140 (83.57%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMI 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of MELO3C008876T1 vs. TrEMBL
Match: A0A061GG64_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_030340 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 6.4e-51
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

[Close]
BLAST of MELO3C008876T1 vs. TrEMBL
Match: A0A0B0N6V2_GOSAR (Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=F383_14611 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-50
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY+ S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAMKQTIDEYQ 112

[Close]
BLAST of MELO3C008876T1 vs. TrEMBL
Match: A0A061FXJ7_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_044670 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.1e-50
Identity = 94/112 (83.93%), Postives = 107/112 (95.54%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD PAQNTSLQRLQNVEKRIVRVL+LAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPAQNTSLQRLQNVEKRIVRVLDLAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CC+KLEY++S+L+ MKQT+D+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCRKLEYVLSQLEAMKQTVDEYQ 112

[Close]
BLAST of MELO3C008876T1 vs. TrEMBL
Match: A0A061FQD7_THECC (Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM_044665 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.1e-50
Identity = 94/112 (83.93%), Postives = 107/112 (95.54%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD PAQNTSLQRLQNVEKRIVRVL+LAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPAQNTSLQRLQNVEKRIVRVLDLAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CC+KLEY++S+L+ MKQT+D+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCRKLEYVLSQLEAMKQTVDEYQ 112

[Close]
BLAST of MELO3C008876T1 vs. TAIR10
Match: AT3G01435.1 (AT3G01435.1 Expressed protein)

HSP 1 Score: 181.4 bits (459), Expect = 3.2e-46
Identity = 83/111 (74.77%), Postives = 99/111 (89.19%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of MELO3C008876T1 vs. NCBI nr
Match: gi|659082827|ref|XP_008442051.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 3.4e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of MELO3C008876T1 vs. NCBI nr
Match: gi|449453808|ref|XP_004144648.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 4.8e-60
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 119
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 118

[Close]
BLAST of MELO3C008876T1 vs. NCBI nr
Match: gi|700199753|gb|KGN54911.1| (hypothetical protein Csa_4G594450 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 3.2e-56
Identity = 115/140 (82.14%), Postives = 117/140 (83.57%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMI 119
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of MELO3C008876T1 vs. NCBI nr
Match: gi|590626684|ref|XP_007026238.1| (Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao])

HSP 1 Score: 208.0 bits (528), Expect = 9.1e-51
Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY++S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVLSQLDAMKQTIDEYQ 112

[Close]
BLAST of MELO3C008876T1 vs. NCBI nr
Match: gi|728830775|gb|KHG10218.1| (Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum])

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-50
Identity = 97/112 (86.61%), Postives = 105/112 (93.75%), Query Frame = 1 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P QNTSLQRLQNVEKRIVRVLELAGGVM+ELANP GPRKEF+NNHC EFM+ IKDIQ
Sbjct: 1   MDSPTQNTSLQRLQNVEKRIVRVLELAGGVMDELANPTGPRKEFINNHCREFMKMIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQ 113
           VTLRDEIKSACEYRPFEKCDYSSRI+NE+CCKKLEY+ S+LD MKQTID+YQ
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRISNEICCKKLEYVFSQLDAMKQTIDEYQ 112

The following BLAST results are available for this feature:
BLAST of MELO3C008876T1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MED11_ARATH5.7e-4574.77Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana G... [more]
BLAST of MELO3C008876T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L450_CUCSA2.3e-5682.14Uncharacterized protein OS=Cucumis sativus GN=Csa_4G594450 PE=4 SV=1[more]
A0A061GG64_THECC6.4e-5186.61Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM... [more]
A0A0B0N6V2_GOSAR1.1e-5086.61Mediator of RNA polymerase II transcription subunit 11 OS=Gossypium arboreum GN=... [more]
A0A061FXJ7_THECC4.1e-5083.93Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM... [more]
A0A061FQD7_THECC4.1e-5083.93Mediator of RNA polymerase II transcription subunit 11 OS=Theobroma cacao GN=TCM... [more]
BLAST of MELO3C008876T1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G01435.13.2e-4674.77 Expressed protein[more]
BLAST of MELO3C008876T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082827|ref|XP_008442051.1|3.4e-61100.00PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo][more]
gi|449453808|ref|XP_004144648.1|4.8e-6097.46PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis sativ... [more]
gi|700199753|gb|KGN54911.1|3.2e-5682.14hypothetical protein Csa_4G594450 [Cucumis sativus][more]
gi|590626684|ref|XP_007026238.1|9.1e-5186.61Mediator of RNA polymerase II transcription subunit 11 [Theobroma cacao][more]
gi|728830775|gb|KHG10218.1|1.6e-5086.61Mediator of RNA polymerase II transcription subunit 11 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR019404Mediator_Med11
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C008876MELO3C008876gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C008876T1MELO3C008876T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C008876T1.cds1MELO3C008876T1.cds1CDS
MELO3C008876T1.cds2MELO3C008876T1.cds2CDS
MELO3C008876T1.cds3MELO3C008876T1.cds3CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 8..110
score: 1.1
NoneNo IPR availableunknownCoilCoilcoord: 101..118
scor
NoneNo IPR availablePANTHERPTHR22890UNCHARACTERIZEDcoord: 1..117
score: 1.2