MELO3C008862T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C008862T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGrowth/differentiation factor 8
Locationchr8 : 23464407 .. 23464658 (-)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAATGTTTCAAAAGTTGCTGGAGCAAATGAACCTGCCTATTATTCTAGAGTTGGTTCCTCAAGAACTAAGTCTAAGACTAAAGCTTCATGTTCATCTTCATCTTCCACACAACTACTGCCCCAACCCACCCCCACACCAATTAATTTGGATGCCTATGAGACGGACGAAGAAGATATAGATGGTTATAAGTCGAATGATGGAGAAAATGAAGATGAAGACCTATCTAGTGAAAATGACTTCAATCTTTAG

mRNA sequence

GGAAATGTTTCAAAAGTTGCTGGAGCAAATGAACCTGCCTATTATTCTAGAGTTGGTTCCTCAAGAACTAAGTCTAAGACTAAAGCTTCATGTTCATCTTCATCTTCCACACAACTACTGCCCCAACCCACCCCCACACCAATTAATTTGGATGCCTATGAGACGGACGAAGAAGATATAGATGGTTATAAGTCGAATGATGGAGAAAATGAAGATGAAGACCTATCTAGTGAAAATGACTTCAATCTTTAG

Coding sequence (CDS)

GGAAATGTTTCAAAAGTTGCTGGAGCAAATGAACCTGCCTATTATTCTAGAGTTGGTTCCTCAAGAACTAAGTCTAAGACTAAAGCTTCATGTTCATCTTCATCTTCCACACAACTACTGCCCCAACCCACCCCCACACCAATTAATTTGGATGCCTATGAGACGGACGAAGAAGATATAGATGGTTATAAGTCGAATGATGGAGAAAATGAAGATGAAGACCTATCTAGTGAAAATGACTTCAATCTTTAG

Protein sequence

GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDIDGYKSNDGENEDEDLSSENDFNL*
Homology
[Close]
BLAST of MELO3C008862T1 vs. NCBI nr
Match: gi|659131242|ref|XP_008465583.1| (PREDICTED: uncharacterized protein LOC103503220 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           GNVS+ AGA EP +YSR   +R    T  SCSSSS+TQ    PTP  INLD  + +EED 
Sbjct: 343 GNVSRAAGAKEPTFYSR---ARASGATNVSCSSSSTTQ----PTPKQINLDDSDQEEEDT 402

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+G NEDED  S+++F+L
Sbjct: 403 DGYKSNEGVNEDEDQFSDDEFDL 418

[Close]
BLAST of MELO3C008862T1 vs. NCBI nr
Match: gi|659121352|ref|XP_008460616.1| (PREDICTED: uncharacterized protein LOC103499393 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-14
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           G+VS+  GA EP +YS+  +S   +KT  SCSSSS+TQ    PTP  INLD  +  EED 
Sbjct: 108 GDVSRAIGAKEPTFYSKARASG--AKTNVSCSSSSTTQ----PTPKQINLDDSDQKEEDT 167

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+G NEDED  S+++F+L
Sbjct: 168 DGYKSNEGVNEDEDQFSDDEFDL 184

[Close]
BLAST of MELO3C008862T1 vs. NCBI nr
Match: gi|659082175|ref|XP_008441704.1| (PREDICTED: uncharacterized protein LOC103485783 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-13
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           G+VS+ A A EP +YSR   +R    T  SCSSSS+TQ     TP  INLD  + +EED 
Sbjct: 116 GDVSRAAEAKEPTFYSR---ARVSEATNVSCSSSSTTQ----STPKQINLDDSDQEEEDT 175

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+G NEDED  S+++F+L
Sbjct: 176 DGYKSNEGVNEDEDQFSDDEFDL 191

[Close]
BLAST of MELO3C008862T1 vs. NCBI nr
Match: gi|659114862|ref|XP_008457261.1| (PREDICTED: uncharacterized protein LOC103496986 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           G+VS+  GA EP +YS+   +R    T  SCSSSS+TQ    PTP  INLD  +  EED 
Sbjct: 154 GDVSRAVGAKEPTFYSK---ARASGATNVSCSSSSTTQ----PTPKQINLDDSD-QEEDT 213

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+G NEDED  S+++F+L
Sbjct: 214 DGYKSNEGVNEDEDQFSDDEFDL 228

[Close]
BLAST of MELO3C008862T1 vs. NCBI nr
Match: gi|778708160|ref|XP_011656133.1| (PREDICTED: uncharacterized protein LOC105435633 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           G+VS+  GA EP++YSR  +S  K KT  SCSSSS+TQ         +NLD ++ +EED 
Sbjct: 226 GDVSRAVGAKEPSFYSRASTS--KPKTIVSCSSSSTTQR------KQVNLDDFDLEEEDT 285

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+  NEDED  S+++F+L
Sbjct: 286 DGYKSNERVNEDEDQFSDDEFDL 300

The following BLAST results are available for this feature:
BLAST of MELO3C008862T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131242|ref|XP_008465583.1|1.5e-1556.63PREDICTED: uncharacterized protein LOC103503220 [Cucumis melo][more]
gi|659121352|ref|XP_008460616.1|4.8e-1454.22PREDICTED: uncharacterized protein LOC103499393 [Cucumis melo][more]
gi|659082175|ref|XP_008441704.1|4.1e-1353.01PREDICTED: uncharacterized protein LOC103485783 [Cucumis melo][more]
gi|659114862|ref|XP_008457261.1|1.2e-1253.01PREDICTED: uncharacterized protein LOC103496986 [Cucumis melo][more]
gi|778708160|ref|XP_011656133.1|2.7e-1250.60PREDICTED: uncharacterized protein LOC105435633 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C008862MELO3C008862gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C008862T1MELO3C008862T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C008862T1.cds1MELO3C008862T1.cds1CDS