MELO3C008862 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008862
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGrowth/differentiation factor 8
Locationchr8 : 23464407 .. 23464658 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAATGTTTCAAAAGTTGCTGGAGCAAATGAACCTGCCTATTATTCTAGAGTTGGTTCCTCAAGAACTAAGTCTAAGACTAAAGCTTCATGTTCATCTTCATCTTCCACACAACTACTGCCCCAACCCACCCCCACACCAATTAATTTGGATGCCTATGAGACGGACGAAGAAGATATAGATGGTTATAAGTCGAATGATGGAGAAAATGAAGATGAAGACCTATCTAGTGAAAATGACTTCAATCTTTAG

mRNA sequence

GGAAATGTTTCAAAAGTTGCTGGAGCAAATGAACCTGCCTATTATTCTAGAGTTGGTTCCTCAAGAACTAAGTCTAAGACTAAAGCTTCATGTTCATCTTCATCTTCCACACAACTACTGCCCCAACCCACCCCCACACCAATTAATTTGGATGCCTATGAGACGGACGAAGAAGATATAGATGGTTATAAGTCGAATGATGGAGAAAATGAAGATGAAGACCTATCTAGTGAAAATGACTTCAATCTTTAG

Coding sequence (CDS)

GGAAATGTTTCAAAAGTTGCTGGAGCAAATGAACCTGCCTATTATTCTAGAGTTGGTTCCTCAAGAACTAAGTCTAAGACTAAAGCTTCATGTTCATCTTCATCTTCCACACAACTACTGCCCCAACCCACCCCCACACCAATTAATTTGGATGCCTATGAGACGGACGAAGAAGATATAGATGGTTATAAGTCGAATGATGGAGAAAATGAAGATGAAGACCTATCTAGTGAAAATGACTTCAATCTTTAG

Protein sequence

GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDIDGYKSNDGENEDEDLSSENDFNL*
Homology
[Close]
BLAST of MELO3C008862 vs. NCBI nr
Match: gi|659131242|ref|XP_008465583.1| (PREDICTED: uncharacterized protein LOC103503220 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           GNVS+ AGA EP +YSR   +R    T  SCSSSS+TQ    PTP  INLD  + +EED 
Sbjct: 343 GNVSRAAGAKEPTFYSR---ARASGATNVSCSSSSTTQ----PTPKQINLDDSDQEEEDT 402

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+G NEDED  S+++F+L
Sbjct: 403 DGYKSNEGVNEDEDQFSDDEFDL 418

[Close]
BLAST of MELO3C008862 vs. NCBI nr
Match: gi|659121352|ref|XP_008460616.1| (PREDICTED: uncharacterized protein LOC103499393 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-14
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           G+VS+  GA EP +YS+  +S   +KT  SCSSSS+TQ    PTP  INLD  +  EED 
Sbjct: 108 GDVSRAIGAKEPTFYSKARASG--AKTNVSCSSSSTTQ----PTPKQINLDDSDQKEEDT 167

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+G NEDED  S+++F+L
Sbjct: 168 DGYKSNEGVNEDEDQFSDDEFDL 184

[Close]
BLAST of MELO3C008862 vs. NCBI nr
Match: gi|659082175|ref|XP_008441704.1| (PREDICTED: uncharacterized protein LOC103485783 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-13
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           G+VS+ A A EP +YSR   +R    T  SCSSSS+TQ     TP  INLD  + +EED 
Sbjct: 116 GDVSRAAEAKEPTFYSR---ARVSEATNVSCSSSSTTQ----STPKQINLDDSDQEEEDT 175

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+G NEDED  S+++F+L
Sbjct: 176 DGYKSNEGVNEDEDQFSDDEFDL 191

[Close]
BLAST of MELO3C008862 vs. NCBI nr
Match: gi|659114862|ref|XP_008457261.1| (PREDICTED: uncharacterized protein LOC103496986 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-12
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           G+VS+  GA EP +YS+   +R    T  SCSSSS+TQ    PTP  INLD  +  EED 
Sbjct: 154 GDVSRAVGAKEPTFYSK---ARASGATNVSCSSSSTTQ----PTPKQINLDDSD-QEEDT 213

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+G NEDED  S+++F+L
Sbjct: 214 DGYKSNEGVNEDEDQFSDDEFDL 228

[Close]
BLAST of MELO3C008862 vs. NCBI nr
Match: gi|778708160|ref|XP_011656133.1| (PREDICTED: uncharacterized protein LOC105435633 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-12
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1 

Query: 1   GNVSKVAGANEPAYYSRVGSSRTKSKTKASCSSSSSTQLLPQPTPTPINLDAYETDEEDI 60
           G+VS+  GA EP++YSR  +S  K KT  SCSSSS+TQ         +NLD ++ +EED 
Sbjct: 226 GDVSRAVGAKEPSFYSRASTS--KPKTIVSCSSSSTTQR------KQVNLDDFDLEEEDT 285

Query: 61  DGYKSNDGENEDEDLSSENDFNL 84
           DGYKSN+  NEDED  S+++F+L
Sbjct: 286 DGYKSNERVNEDEDQFSDDEFDL 300

The following BLAST results are available for this feature:
BLAST of MELO3C008862 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131242|ref|XP_008465583.1|1.5e-1556.63PREDICTED: uncharacterized protein LOC103503220 [Cucumis melo][more]
gi|659121352|ref|XP_008460616.1|4.8e-1454.22PREDICTED: uncharacterized protein LOC103499393 [Cucumis melo][more]
gi|659082175|ref|XP_008441704.1|4.1e-1353.01PREDICTED: uncharacterized protein LOC103485783 [Cucumis melo][more]
gi|659114862|ref|XP_008457261.1|1.2e-1253.01PREDICTED: uncharacterized protein LOC103496986 [Cucumis melo][more]
gi|778708160|ref|XP_011656133.1|2.7e-1250.60PREDICTED: uncharacterized protein LOC105435633 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008862T1MELO3C008862T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008862Silver-seed gourdcarmeB0586
MELO3C008862Silver-seed gourdcarmeB0998
MELO3C008862Watermelon (97103) v2mewmbB542
MELO3C008862Wax gourdmewgoB649
MELO3C008862Wax gourdmewgoB652
MELO3C008862Wax gourdmewgoB660
MELO3C008862Cucurbita maxima (Rimu)cmameB610
MELO3C008862Cucurbita maxima (Rimu)cmameB801
MELO3C008862Cucurbita moschata (Rifu)cmomeB599
MELO3C008862Cucurbita moschata (Rifu)cmomeB785
MELO3C008862Watermelon (Charleston Gray)mewcgB533
MELO3C008862Watermelon (97103) v1mewmB587
MELO3C008862Cucurbita pepo (Zucchini)cpemeB070
MELO3C008862Cucurbita pepo (Zucchini)cpemeB459
MELO3C008862Bottle gourd (USVL1VR-Ls)lsimeB157