MELO3C008600T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C008600T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPlasma membrane calcium-transporting ATPase 1
Locationchr5 : 14093155 .. 14093415 (+)
Sequence length261
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACCAACACTCTATCGTATCATCACAATCTACAAAAGTAAGGCAAAACTTAGACATCTCAAGACCAAACAAGAAGGTCAAAAAGAGGATAAGAATGTGGATAGCGAGAAAGAAGAAGGAGGGAAAGAAGAAGAAGTGCCATTAAAGCCAAAAAGGCAAGGCGAGGAGGAGACCTCAGATTCGAAGAAAGCTAAAATCCCTAAGGTCAGTGACTTTAAGGAAATTTTGCCTCCTGCGTCGTTAAGCAGTCCCACTTAA

mRNA sequence

ATGGGACCAACACTCTATCGTATCATCACAATCTACAAAAGTAAGGCAAAACTTAGACATCTCAAGACCAAACAAGAAGGTCAAAAAGAGGATAAGAATGTGGATAGCGAGAAAGAAGAAGGAGGGAAAGAAGAAGAAGTGCCATTAAAGCCAAAAAGGCAAGGCGAGGAGGAGACCTCAGATTCGAAGAAAGCTAAAATCCCTAAGGTCAGTGACTTTAAGGAAATTTTGCCTCCTGCGTCGTTAAGCAGTCCCACTTAA

Coding sequence (CDS)

ATGGGACCAACACTCTATCGTATCATCACAATCTACAAAAGTAAGGCAAAACTTAGACATCTCAAGACCAAACAAGAAGGTCAAAAAGAGGATAAGAATGTGGATAGCGAGAAAGAAGAAGGAGGGAAAGAAGAAGAAGTGCCATTAAAGCCAAAAAGGCAAGGCGAGGAGGAGACCTCAGATTCGAAGAAAGCTAAAATCCCTAAGGTCAGTGACTTTAAGGAAATTTTGCCTCCTGCGTCGTTAAGCAGTCCCACTTAA

Protein sequence

MGPTLYRIITIYKSKAKLRHLKTKQEGQKEDKNVDSEKEEGGKEEEVPLKPKRQGEEETSDSKKAKIPKVSDFKEILPPASLSSPT*
Homology
[Close]
BLAST of MELO3C008600T1 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1 

Query: 4   TLYRIITIYKSKAKLRHLKTKQEGQKEDKNVDSEKEEGGKEEEVPLKPKRQGEEETSDSK 63
           TL+ II I+K+KAKL+ LKTKQ+G+ + K VD E EE  ++++VPLK KRQGEEE   SK
Sbjct: 19  TLHCIIAIHKNKAKLKCLKTKQDGKSKVKTVDDEDEEEKEKDDVPLKRKRQGEEEALGSK 78

Query: 64  KAKIPKVSDFKEILPPASLSSP 86
           K K  K  D KE        SP
Sbjct: 79  KIKTFKDKDSKENFLSTFTKSP 100

[Close]
BLAST of MELO3C008600T1 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1 

Query: 4   TLYRIITIYKSKAKLRHLKTKQEGQKEDKNVDSEK-EEGGKEEEVPLKPKRQGEEETSDS 63
           TL+RII I+K+KAK++ LKTK EG K  K +D +  EE  K++ +P K KRQ +E+   S
Sbjct: 118 TLHRIIAIHKNKAKIKCLKTK-EGCKVVKEIDDDDVEEEDKKDNIPQKRKRQDKEDDLGS 177

Query: 64  KKAKIPKVSD 73
           KKAK  K+ D
Sbjct: 178 KKAKSSKIED 186

The following BLAST results are available for this feature:
BLAST of MELO3C008600T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123193|ref|XP_008461541.1|1.8e-1152.44PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
gi|700202594|gb|KGN57727.1|1.0e-0650.00hypothetical protein Csa_3G263250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C008600MELO3C008600gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C008600T1MELO3C008600T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C008600T1.cds1MELO3C008600T1.cds1CDS