MELO3C008600 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008600
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPlasma membrane calcium-transporting ATPase 1
Locationchr5 : 14093155 .. 14093415 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACCAACACTCTATCGTATCATCACAATCTACAAAAGTAAGGCAAAACTTAGACATCTCAAGACCAAACAAGAAGGTCAAAAAGAGGATAAGAATGTGGATAGCGAGAAAGAAGAAGGAGGGAAAGAAGAAGAAGTGCCATTAAAGCCAAAAAGGCAAGGCGAGGAGGAGACCTCAGATTCGAAGAAAGCTAAAATCCCTAAGGTCAGTGACTTTAAGGAAATTTTGCCTCCTGCGTCGTTAAGCAGTCCCACTTAA

mRNA sequence

ATGGGACCAACACTCTATCGTATCATCACAATCTACAAAAGTAAGGCAAAACTTAGACATCTCAAGACCAAACAAGAAGGTCAAAAAGAGGATAAGAATGTGGATAGCGAGAAAGAAGAAGGAGGGAAAGAAGAAGAAGTGCCATTAAAGCCAAAAAGGCAAGGCGAGGAGGAGACCTCAGATTCGAAGAAAGCTAAAATCCCTAAGGTCAGTGACTTTAAGGAAATTTTGCCTCCTGCGTCGTTAAGCAGTCCCACTTAA

Coding sequence (CDS)

ATGGGACCAACACTCTATCGTATCATCACAATCTACAAAAGTAAGGCAAAACTTAGACATCTCAAGACCAAACAAGAAGGTCAAAAAGAGGATAAGAATGTGGATAGCGAGAAAGAAGAAGGAGGGAAAGAAGAAGAAGTGCCATTAAAGCCAAAAAGGCAAGGCGAGGAGGAGACCTCAGATTCGAAGAAAGCTAAAATCCCTAAGGTCAGTGACTTTAAGGAAATTTTGCCTCCTGCGTCGTTAAGCAGTCCCACTTAA

Protein sequence

MGPTLYRIITIYKSKAKLRHLKTKQEGQKEDKNVDSEKEEGGKEEEVPLKPKRQGEEETSDSKKAKIPKVSDFKEILPPASLSSPT*
Homology
[Close]
BLAST of MELO3C008600 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1 

Query: 4   TLYRIITIYKSKAKLRHLKTKQEGQKEDKNVDSEKEEGGKEEEVPLKPKRQGEEETSDSK 63
           TL+ II I+K+KAKL+ LKTKQ+G+ + K VD E EE  ++++VPLK KRQGEEE   SK
Sbjct: 19  TLHCIIAIHKNKAKLKCLKTKQDGKSKVKTVDDEDEEEKEKDDVPLKRKRQGEEEALGSK 78

Query: 64  KAKIPKVSDFKEILPPASLSSP 86
           K K  K  D KE        SP
Sbjct: 79  KIKTFKDKDSKENFLSTFTKSP 100

[Close]
BLAST of MELO3C008600 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1 

Query: 4   TLYRIITIYKSKAKLRHLKTKQEGQKEDKNVDSEK-EEGGKEEEVPLKPKRQGEEETSDS 63
           TL+RII I+K+KAK++ LKTK EG K  K +D +  EE  K++ +P K KRQ +E+   S
Sbjct: 118 TLHRIIAIHKNKAKIKCLKTK-EGCKVVKEIDDDDVEEEDKKDNIPQKRKRQDKEDDLGS 177

Query: 64  KKAKIPKVSD 73
           KKAK  K+ D
Sbjct: 178 KKAKSSKIED 186

The following BLAST results are available for this feature:
BLAST of MELO3C008600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123193|ref|XP_008461541.1|1.8e-1152.44PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
gi|700202594|gb|KGN57727.1|1.0e-0650.00hypothetical protein Csa_3G263250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008600T1MELO3C008600T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C008600Wax gourdmewgoB455
MELO3C008600Wax gourdmewgoB458
MELO3C008600Cucumber (Gy14) v1cgymeB464
MELO3C008600Cucurbita maxima (Rimu)cmameB739
MELO3C008600Cucurbita moschata (Rifu)cmomeB726
MELO3C008600Wild cucumber (PI 183967)cpimeB142
MELO3C008600Cucumber (Chinese Long) v2cumeB132
MELO3C008600Cucumber (Chinese Long) v2cumeB137
MELO3C008600Watermelon (Charleston Gray)mewcgB369
MELO3C008600Watermelon (97103) v1mewmB428
MELO3C008600Cucurbita pepo (Zucchini)cpemeB101
MELO3C008600Bottle gourd (USVL1VR-Ls)lsimeB117
MELO3C008600Cucumber (Gy14) v2cgybmeB124
MELO3C008600Silver-seed gourdcarmeB0237
MELO3C008600Cucumber (Chinese Long) v3cucmeB144