MELO3C008549T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C008549T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTranscription factor MYB44
Locationchr5 : 12695488 .. 12695679 (-)
Sequence length192
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCGAAATGCAACAAAGGACAACCTACAATTACAACTCTCATTGCCAAATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATTCAGACGGCACGGTGGTAGTCGAACCGGCGTTTATCGACTTTTTAGGAGTAGGAGGCAGATGA

mRNA sequence

ATGACCGAAATGCAACAAAGGACAACCTACAATTACAACTCTCATTGCCAAATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATTCAGACGGCACGGTGGTAGTCGAACCGGCGTTTATCGACTTTTTAGGAGTAGGAGGCAGATGA

Coding sequence (CDS)

ATGACCGAAATGCAACAAAGGACAACCTACAATTACAACTCTCATTGCCAAATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATTCAGACGGCACGGTGGTAGTCGAACCGGCGTTTATCGACTTTTTAGGAGTAGGAGGCAGATGA

Protein sequence

MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFIDFLGVGGR*
Homology
[Close]
BLAST of MELO3C008549T1 vs. TrEMBL
Match: A0A0A0LHV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1 

Query: 1   MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGN-SDGTVVVEPAFIDFLG 60
           MTEMQQR+ Y+YNSHCQIPKAWDHHIIGSEGSSSVSEENGVGN S+G VVVEP FIDFLG
Sbjct: 201 MTEMQQRSNYSYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNISEGMVVVEPVFIDFLG 260

Query: 61  VGGR 64
           VGGR
Sbjct: 261 VGGR 264

[Close]
BLAST of MELO3C008549T1 vs. NCBI nr
Match: gi|659082191|ref|XP_008441713.1| (PREDICTED: transcription factor MYB44 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 4.1e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1   MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFIDFLGV 60
           MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFIDFLGV
Sbjct: 201 MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFIDFLGV 260

Query: 61  GGR 64
           GGR
Sbjct: 261 GGR 263

[Close]
BLAST of MELO3C008549T1 vs. NCBI nr
Match: gi|449442435|ref|XP_004138987.1| (PREDICTED: transcription factor MYB44 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1 

Query: 1   MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGN-SDGTVVVEPAFIDFLG 60
           MTEMQQR+ Y+YNSHCQIPKAWDHHIIGSEGSSSVSEENGVGN S+G VVVEP FIDFLG
Sbjct: 201 MTEMQQRSNYSYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNISEGMVVVEPVFIDFLG 260

Query: 61  VGGR 64
           VGGR
Sbjct: 261 VGGR 264

The following BLAST results are available for this feature:
BLAST of MELO3C008549T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHV6_CUCSA1.2e-2489.06Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1[more]
BLAST of MELO3C008549T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082191|ref|XP_008441713.1|4.1e-29100.00PREDICTED: transcription factor MYB44 [Cucumis melo][more]
gi|449442435|ref|XP_004138987.1|1.8e-2489.06PREDICTED: transcription factor MYB44 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C008549MELO3C008549gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C008549T1MELO3C008549T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C008549T1.cds1MELO3C008549T1.cds1CDS