MELO3C008549 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008549
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription factor MYB44
Location	chr5 : 12695488 .. 12695679 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGAAATGCAACAAAGGACAACCTACAATTACAACTCTCATTGCCAAATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATTCAGACGGCACGGTGGTAGTCGAACCGGCGTTTATCGACTTTTTAGGAGTAGGAGGCAGATGA

mRNA sequence

ATGACCGAAATGCAACAAAGGACAACCTACAATTACAACTCTCATTGCCAAATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATTCAGACGGCACGGTGGTAGTCGAACCGGCGTTTATCGACTTTTTAGGAGTAGGAGGCAGATGA

Coding sequence (CDS)

ATGACCGAAATGCAACAAAGGACAACCTACAATTACAACTCTCATTGCCAAATTCCAAAAGCATGGGATCACCATATTATTGGAAGCGAGGGATCATCATCAGTGAGCGAGGAAAACGGAGTTGGCAATTCAGACGGCACGGTGGTAGTCGAACCGGCGTTTATCGACTTTTTAGGAGTAGGAGGCAGATGA

Protein sequence

MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFIDFLGVGGR*

Homology

[Close]

BLAST of MELO3C008549 vs. TrEMBL
Match: A0A0A0LHV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1   MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGN-SDGTVVVEPAFIDFLG 60
           MTEMQQR+ Y+YNSHCQIPKAWDHHIIGSEGSSSVSEENGVGN S+G VVVEP FIDFLG
Sbjct: 201 MTEMQQRSNYSYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNISEGMVVVEPVFIDFLG 260

Query: 61  VGGR 64
           VGGR
Sbjct: 261 VGGR 264

[Close]

BLAST of MELO3C008549 vs. NCBI nr
Match: gi|659082191|ref|XP_008441713.1| (PREDICTED: transcription factor MYB44 [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 4.1e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1


Query: 1   MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFIDFLGV 60
           MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFIDFLGV
Sbjct: 201 MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFIDFLGV 260

Query: 61  GGR 64
           GGR
Sbjct: 261 GGR 263

[Close]

BLAST of MELO3C008549 vs. NCBI nr
Match: gi|449442435|ref|XP_004138987.1| (PREDICTED: transcription factor MYB44 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 1   MTEMQQRTTYNYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGN-SDGTVVVEPAFIDFLG 60
           MTEMQQR+ Y+YNSHCQIPKAWDHHIIGSEGSSSVSEENGVGN S+G VVVEP FIDFLG
Sbjct: 201 MTEMQQRSNYSYNSHCQIPKAWDHHIIGSEGSSSVSEENGVGNISEGMVVVEPVFIDFLG 260

Query: 61  VGGR 64
           VGGR
Sbjct: 261 VGGR 264

The following BLAST results are available for this feature:

BLAST of MELO3C008549 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHV6_CUCSA	1.2e-24	89.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1	[more]

BLAST of MELO3C008549 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082191\|ref\|XP_008441713.1\|	4.1e-29	100.00	PREDICTED: transcription factor MYB44 [Cucumis melo]	[more]
gi\|449442435\|ref\|XP_004138987.1\|	1.8e-24	89.06	PREDICTED: transcription factor MYB44 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008549T1	MELO3C008549T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008549	CSPI02G08240	Wild cucumber (PI 183967)	cpimeB142
MELO3C008549	CsGy2G008510	Cucumber (Gy14) v2	cgybmeB124
MELO3C008549	CsaV3_2G010610	Cucumber (Chinese Long) v3	cucmeB144

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008549	Watermelon (97103) v2	mewmbB371
MELO3C008549	Watermelon (97103) v2	mewmbB374
MELO3C008549	Wax gourd	mewgoB455
MELO3C008549	Cucumber (Gy14) v1	cgymeB345
MELO3C008549	Cucurbita maxima (Rimu)	cmameB430
MELO3C008549	Cucurbita maxima (Rimu)	cmameB736
MELO3C008549	Cucurbita moschata (Rifu)	cmomeB420
MELO3C008549	Cucurbita moschata (Rifu)	cmomeB726
MELO3C008549	Cucumber (Chinese Long) v2	cumeB132
MELO3C008549	Watermelon (Charleston Gray)	mewcgB370
MELO3C008549	Watermelon (Charleston Gray)	mewcgB374
MELO3C008549	Watermelon (97103) v1	mewmB427
MELO3C008549	Cucurbita pepo (Zucchini)	cpemeB101
MELO3C008549	Cucurbita pepo (Zucchini)	cpemeB528
MELO3C008549	Bottle gourd (USVL1VR-Ls)	lsimeB117
MELO3C008549	Silver-seed gourd	carmeB0698
MELO3C008549	Silver-seed gourd	carmeB1037