MELO3C008544.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008544.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Cell division protein ftsH
Location	chr05 : 12536479 .. 12536833 (+)
Sequence length	276

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTGTATATGTAGTTGAAAAGAAATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGTATATTTTTAAGTTTCTAAAGGTGTATTTGGAATGGTATAAATCGTTAAACAAAAAATAATATGTATATATATGGTAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAGAAATTTATGAAATTAGATGTTGTCTTTGAAACACCGGAA

mRNA sequence

ATCTGTATATGTAGTTGAAAAGAAATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAGAAATTTATGAAATTAGATGTTGTCTTTGAAACACCGGAA

Coding sequence (CDS)

ATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAG

Protein sequence

MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGTQNVVYQD

Homology

[Close]

BLAST of MELO3C008544.2.1 vs. NCBI nr
Match: XP_008464749.1 (PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 11  SRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGT 64
           ++LK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+QTIYP DDE+EL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

[Close]

BLAST of MELO3C008544.2.1 vs. TrEMBL
Match: tr|A0A1S3CM64|A0A1S3CM64_CUCME (uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 11  SRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGT 64
           ++LK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+QTIYP DDE+EL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

The following BLAST results are available for this feature:

BLAST of MELO3C008544.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464749.1	4.4e-09	62.26	PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo]	[more]

BLAST of MELO3C008544.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C008544.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C008544.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CM64\|A0A1S3CM64_CUCME	2.9e-09	62.26	uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C008544.2	MELO3C008544.2	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C008544.2.1	MELO3C008544.2.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008544.2.1.exon.1	MELO3C008544.2.1.exon.1	exon
MELO3C008544.2.1.exon.2	MELO3C008544.2.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008544.2.1.five_prime_UTR.1	MELO3C008544.2.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008544.2.1.CDS.1	MELO3C008544.2.1.CDS.1	CDS
MELO3C008544.2.1.CDS.2	MELO3C008544.2.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008544.2.1.three_prime_UTR.1	MELO3C008544.2.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..70