MELO3C008544.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008544.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Cell division protein ftsH
Location	chr05 : 12536479 .. 12536833 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTGTATATGTAGTTGAAAAGAAATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGTATATTTTTAAGTTTCTAAAGGTGTATTTGGAATGGTATAAATCGTTAAACAAAAAATAATATGTATATATATGGTAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAGAAATTTATGAAATTAGATGTTGTCTTTGAAACACCGGAA

mRNA sequence

ATCTGTATATGTAGTTGAAAAGAAATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAGAAATTTATGAAATTAGATGTTGTCTTTGAAACACCGGAA

Coding sequence (CDS)

ATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAG

Protein sequence

MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGTQNVVYQD

Homology

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BLAST of MELO3C008544.2 vs. NCBI nr
Match: XP_008464749.1 (PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 11  SRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGT 64
           ++LK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+QTIYP DDE+EL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

[Close]

BLAST of MELO3C008544.2 vs. TrEMBL
Match: tr|A0A1S3CM64|A0A1S3CM64_CUCME (uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 11  SRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGT 64
           ++LK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+QTIYP DDE+EL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

The following BLAST results are available for this feature:

BLAST of MELO3C008544.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464749.1	4.4e-09	62.26	PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo]	[more]

BLAST of MELO3C008544.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C008544.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C008544.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CM64\|A0A1S3CM64_CUCME	2.9e-09	62.26	uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008544.2.1	MELO3C008544.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..70

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008544.2	Cucumber (Gy14) v2	cgybmedB122
MELO3C008544.2	Cucumber (Gy14) v1	cgymedB340
MELO3C008544.2	Cucurbita maxima (Rimu)	cmamedB494
MELO3C008544.2	Cucurbita maxima (Rimu)	cmamedB830
MELO3C008544.2	Cucurbita moschata (Rifu)	cmomedB481
MELO3C008544.2	Cucurbita moschata (Rifu)	cmomedB823
MELO3C008544.2	Cucurbita pepo (Zucchini)	cpemedB125
MELO3C008544.2	Cucurbita pepo (Zucchini)	cpemedB627
MELO3C008544.2	Wild cucumber (PI 183967)	cpimedB135
MELO3C008544.2	Cucumber (Chinese Long) v2	cumedB135
MELO3C008544.2	Bottle gourd (USVL1VR-Ls)	lsimedB125
MELO3C008544.2	Silver-seed gourd	carmedB0711
MELO3C008544.2	Cucumber (Chinese Long) v3	cucmedB137
MELO3C008544.2	Wax gourd	medwgoB458