MELO3C008465T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008465T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ribosomal RNA large subunit methyltransferase E
Location	chr3 : 7055879 .. 7056102 (-)
Sequence length	224

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACTGAATTCAAGAAGGTCATGAAGAAGGCCCAAGAGAAGAAGATAAAGGTGGCATCTGACCTCCTTAAACTCAAAGTTACAACACATGGCGTTAAAGCCCTGATGAAGGAAAAGAAAGAGATTAAGTTGAAGGAGTGGGAAAACCTCTTTAACAAAGTGAAAAAAGTATCCCTTTCCACGGAGAAGGGCAAGGCAAAGAGAACAAGAAGCGAGGAAGTTTGA

mRNA sequence

AGACTGAATTCAAGAAGGTCATGAAGAAGGCCCAAGAGAAGAAGATAAAGGTGGCATCTGACCTCCTTAAACTCAAAGTTACAACACATGGCGTTAAAGCCCTGATGAAGGAAAAGAAAGAGATTAAGTTGAAGGAGTGGGAAAACCTCTTTAACAAAGTGAAAAAAGTATCCCTTTCCACGGAGAAGGGCAAGGCAAAGAGAACAAGAAGCGAGGAAGTTTGA

Coding sequence (CDS)

AGACTGAATTCAAGAAGGTCATGAAGAAGGCCCAAGAGAAGAAGATAAAGGTGGCATCTGACCTCCTTAAACTCAAAGTTACAACACATGGCGTTAAAGCCCTGATGAAGGAAAAGAAAGAGATTAAGTTGAAGGAGTGGGAAAACCTCTTTAACAAAGTGAAAAAAGTATCCCTTTCCACGGAGAAGGGCAAGGCAAAGAGAACAAGAAGCGAGGAAGTTTGA

Protein sequence

TEFKKVMKKAQEKKIKVASDLLKLKVTTHGVKALMKEKKEIKLKEWENLFNKVKKVSLSTEKGKAKRTRSEEV*

Homology

[Close]

BLAST of MELO3C008465T1 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 1  TEFKKVMKKAQEKKIKVASDLLKLKVTTHGVKALMKEKKEIKLKEWENLFNKVKKVSLST 60
          TEF++V+ KAQEK  KV + LLK+KV      AL + KKEIKL++ E L NKV K++LS 
Sbjct: 4  TEFERVVNKAQEKTEKVRARLLKIKVKAQRAMALAEGKKEIKLRQPEELLNKVDKLALSV 63

Query: 61 EKGKAKRTRSEE 73
          EKGK K    EE
Sbjct: 64 EKGKEKEKTFEE 75

[Close]

BLAST of MELO3C008465T1 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 21 LLKLKVTTHGVKALMKEKKEIKLKEWENLFNKVKKVSLSTEKGKAKRTRSE 72
          LLK+KV   G+KAL +EKKEIKL+E E L NKV KV+LS EK K ++T  E
Sbjct: 44 LLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKTFEE 94

[Close]

BLAST of MELO3C008465T1 vs. NCBI nr
Match: gi|659123312|ref|XP_008461598.1| (PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 1   TEFKKVMKKAQEKKIKVASDLLKLKVTTHGVKALMKEKKEIKLKEWENLFNKVKKVSLST 60
           T F KV +K  +K  K+   LLK+KV   GVKAL +EKKE  L+E E L N+V K++L  
Sbjct: 40  TNFDKVARKPLKKTKKLKKWLLKIKVKAQGVKALAEEKKESMLREREELLNEVDKMALLV 99

Query: 61  EKGKAKRTRSE 72
            K K K   ++
Sbjct: 100 NKSKGKEKTTD 110

The following BLAST results are available for this feature:

BLAST of MELO3C008465T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083323\|ref\|XP_008442290.1\|	6.4e-10	54.17	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]
gi\|659130998\|ref\|XP_008465464.1\|	1.9e-06	60.78	PREDICTED: DNA ligase 1-like [Cucumis melo]	[more]
gi\|659123312\|ref\|XP_008461598.1\|	5.6e-06	45.07	PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucum...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C008465	MELO3C008465	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C008465T1	MELO3C008465T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C008465T1.cds1	MELO3C008465T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 36..56 scor