MELO3C008465 (gene) Melon (DHL92) v3.5.1

NameMELO3C008465
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibosomal RNA large subunit methyltransferase E
Locationchr3 : 7055879 .. 7056102 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACTGAATTCAAGAAGGTCATGAAGAAGGCCCAAGAGAAGAAGATAAAGGTGGCATCTGACCTCCTTAAACTCAAAGTTACAACACATGGCGTTAAAGCCCTGATGAAGGAAAAGAAAGAGATTAAGTTGAAGGAGTGGGAAAACCTCTTTAACAAAGTGAAAAAAGTATCCCTTTCCACGGAGAAGGGCAAGGCAAAGAGAACAAGAAGCGAGGAAGTTTGA

mRNA sequence

AGACTGAATTCAAGAAGGTCATGAAGAAGGCCCAAGAGAAGAAGATAAAGGTGGCATCTGACCTCCTTAAACTCAAAGTTACAACACATGGCGTTAAAGCCCTGATGAAGGAAAAGAAAGAGATTAAGTTGAAGGAGTGGGAAAACCTCTTTAACAAAGTGAAAAAAGTATCCCTTTCCACGGAGAAGGGCAAGGCAAAGAGAACAAGAAGCGAGGAAGTTTGA

Coding sequence (CDS)

AGACTGAATTCAAGAAGGTCATGAAGAAGGCCCAAGAGAAGAAGATAAAGGTGGCATCTGACCTCCTTAAACTCAAAGTTACAACACATGGCGTTAAAGCCCTGATGAAGGAAAAGAAAGAGATTAAGTTGAAGGAGTGGGAAAACCTCTTTAACAAAGTGAAAAAAGTATCCCTTTCCACGGAGAAGGGCAAGGCAAAGAGAACAAGAAGCGAGGAAGTTTGA

Protein sequence

TEFKKVMKKAQEKKIKVASDLLKLKVTTHGVKALMKEKKEIKLKEWENLFNKVKKVSLSTEKGKAKRTRSEEV*
BLAST of MELO3C008465 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1

Query: 1  TEFKKVMKKAQEKKIKVASDLLKLKVTTHGVKALMKEKKEIKLKEWENLFNKVKKVSLST 60
          TEF++V+ KAQEK  KV + LLK+KV      AL + KKEIKL++ E L NKV K++LS 
Sbjct: 4  TEFERVVNKAQEKTEKVRARLLKIKVKAQRAMALAEGKKEIKLRQPEELLNKVDKLALSV 63

Query: 61 EKGKAKRTRSEE 73
          EKGK K    EE
Sbjct: 64 EKGKEKEKTFEE 75

BLAST of MELO3C008465 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1

Query: 21 LLKLKVTTHGVKALMKEKKEIKLKEWENLFNKVKKVSLSTEKGKAKRTRSE 72
          LLK+KV   G+KAL +EKKEIKL+E E L NKV KV+LS EK K ++T  E
Sbjct: 44 LLKIKVKAQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKEEKTFEE 94

BLAST of MELO3C008465 vs. NCBI nr
Match: gi|659123312|ref|XP_008461598.1| (PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-06
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 1

Query: 1   TEFKKVMKKAQEKKIKVASDLLKLKVTTHGVKALMKEKKEIKLKEWENLFNKVKKVSLST 60
           T F KV +K  +K  K+   LLK+KV   GVKAL +EKKE  L+E E L N+V K++L  
Sbjct: 40  TNFDKVARKPLKKTKKLKKWLLKIKVKAQGVKALAEEKKESMLREREELLNEVDKMALLV 99

Query: 61  EKGKAKRTRSE 72
            K K K   ++
Sbjct: 100 NKSKGKEKTTD 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659083323|ref|XP_008442290.1|6.4e-1054.17PREDICTED: stress response protein NST1-like [Cucumis melo][more]
gi|659130998|ref|XP_008465464.1|1.9e-0660.78PREDICTED: DNA ligase 1-like [Cucumis melo][more]
gi|659123312|ref|XP_008461598.1|5.6e-0645.07PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucum... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008465T1MELO3C008465T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 36..56
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None