MELO3C007927T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C007927T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSingle-stranded nucleic acid-binding protein R3H
Locationchr8 : 6301972 .. 6302432 (-)
Sequence length383
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCAATCACCAAACCCTAACTTCGAAAATGCAATTCCGATCCACAAGTTATCTTACTATCTCCTTCTCCTTTGTGGTGGGGACCTTCGTTCTCTTATCTTTCATGTCTTGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGTAGCCACGAGTCGATTGATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAGTAAGTTGTTTATTTAGCTTTCCCGTATCGTGGATGGTGTGATTGGATTCAGGAGTTCTATAATGTCATGTTCGGTAGAGGGAGGAGAAAATTAA

mRNA sequence

GTGCAATCACCAAACCCTAACTTCGAAAATGCAATTCCGATCCACAAGTTATCTTACTATCTCCTTCTCCTTTGTGGTGGGGACCTTCGTTCTCTTATCTTTCATGTCTTGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGTAGCCACGAGTCGATTGATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAAGGGAGGAGAAAATTAA

Coding sequence (CDS)

ATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAAGGGAGGAGAAAATTAA

Protein sequence

MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALHNPGKRLSKGGEN*
Homology
[Close]
BLAST of MELO3C007927T1 vs. NCBI nr
Match: gi|659081062|ref|XP_008441130.1| (PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
          MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60

Query: 61 NPGKRLSK 69
          NPGKRLSK
Sbjct: 61 NPGKRLSK 68

[Close]
BLAST of MELO3C007927T1 vs. NCBI nr
Match: gi|659091848|ref|XP_008446764.1| (PREDICTED: R3H domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 7.9e-13
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLD  VADA  AYHF         ASASSALDRVSEDAIN VD+FLR 
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLR- 87

Query: 61 EALHNPGKRLS 68
          EALHNP +RLS
Sbjct: 88 EALHNPRERLS 95

[Close]
BLAST of MELO3C007927T1 vs. NCBI nr
Match: gi|778706333|ref|XP_011655833.1| (PREDICTED: R3H domain-containing protein 2-like [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 8.8e-12
Identity = 49/71 (69.01%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLD  VADA  AYHF          SA SALDRVSEDAIN VD+FLR 
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAAAYHFSTASFPSLSGSAYSALDRVSEDAINQVDQFLR- 87

Query: 61 EALHNPGKRLS 68
          EALHNP +RLS
Sbjct: 88 EALHNPRERLS 95

The following BLAST results are available for this feature:
BLAST of MELO3C007927T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081062|ref|XP_008441130.1|1.6e-29100.00PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo][more]
gi|659091848|ref|XP_008446764.1|7.9e-1371.83PREDICTED: R3H domain-containing protein 2-like [Cucumis melo][more]
gi|778706333|ref|XP_011655833.1|8.8e-1269.01PREDICTED: R3H domain-containing protein 2-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C007927MELO3C007927gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C007927T1.cds2MELO3C007927T1.cds2CDS
MELO3C007927T1.cds1MELO3C007927T1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C007927T1MELO3C007927T1-proteinpolypeptide