MELO3C007927 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C007927
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSingle-stranded nucleic acid-binding protein R3H
Locationchr8 : 6301972 .. 6302432 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCAATCACCAAACCCTAACTTCGAAAATGCAATTCCGATCCACAAGTTATCTTACTATCTCCTTCTCCTTTGTGGTGGGGACCTTCGTTCTCTTATCTTTCATGTCTTGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGTAGCCACGAGTCGATTGATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAGTAAGTTGTTTATTTAGCTTTCCCGTATCGTGGATGGTGTGATTGGATTCAGGAGTTCTATAATGTCATGTTCGGTAGAGGGAGGAGAAAATTAA

mRNA sequence

GTGCAATCACCAAACCCTAACTTCGAAAATGCAATTCCGATCCACAAGTTATCTTACTATCTCCTTCTCCTTTGTGGTGGGGACCTTCGTTCTCTTATCTTTCATGTCTTGGAGCACCGGAGTCATGGGAGGTCGCCGATTTGGACGTAGCCACGAGTCGATTGATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAAGGGAGGAGAAAATTAA

Coding sequence (CDS)

ATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAAGGGAGGAGAAAATTAA

Protein sequence

MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALHNPGKRLSKGGEN*
Homology
[Close]
BLAST of MELO3C007927 vs. NCBI nr
Match: gi|659081062|ref|XP_008441130.1| (PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
          MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60

Query: 61 NPGKRLSK 69
          NPGKRLSK
Sbjct: 61 NPGKRLSK 68

[Close]
BLAST of MELO3C007927 vs. NCBI nr
Match: gi|659091848|ref|XP_008446764.1| (PREDICTED: R3H domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 7.9e-13
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 1 

Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLD  VADA  AYHF         ASASSALDRVSEDAIN VD+FLR 
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLR- 87

Query: 61 EALHNPGKRLS 68
          EALHNP +RLS
Sbjct: 88 EALHNPRERLS 95

[Close]
BLAST of MELO3C007927 vs. NCBI nr
Match: gi|778706333|ref|XP_011655833.1| (PREDICTED: R3H domain-containing protein 2-like [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 8.8e-12
Identity = 49/71 (69.01%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1  MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
          MLPSSSP KNS SLD  VADA  AYHF          SA SALDRVSEDAIN VD+FLR 
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAAAYHFSTASFPSLSGSAYSALDRVSEDAINQVDQFLR- 87

Query: 61 EALHNPGKRLS 68
          EALHNP +RLS
Sbjct: 88 EALHNPRERLS 95

The following BLAST results are available for this feature:
BLAST of MELO3C007927 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081062|ref|XP_008441130.1|1.6e-29100.00PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo][more]
gi|659091848|ref|XP_008446764.1|7.9e-1371.83PREDICTED: R3H domain-containing protein 2-like [Cucumis melo][more]
gi|778706333|ref|XP_011655833.1|8.8e-1269.01PREDICTED: R3H domain-containing protein 2-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007927T1MELO3C007927T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C007927Cucumber (Gy14) v2cgybmeB133
MELO3C007927Cucumber (Gy14) v2cgybmeB221
MELO3C007927Cucumber (Gy14) v2cgybmeB225
MELO3C007927Cucumber (Gy14) v2cgybmeB444
MELO3C007927Silver-seed gourdcarmeB0147
MELO3C007927Silver-seed gourdcarmeB0357
MELO3C007927Silver-seed gourdcarmeB0414
MELO3C007927Silver-seed gourdcarmeB0643
MELO3C007927Silver-seed gourdcarmeB0960
MELO3C007927Cucumber (Chinese Long) v3cucmeB154
MELO3C007927Cucumber (Chinese Long) v3cucmeB263
MELO3C007927Cucumber (Chinese Long) v3cucmeB517
MELO3C007927Watermelon (97103) v2mewmbB513
MELO3C007927Watermelon (97103) v2mewmbB520
MELO3C007927Watermelon (97103) v2mewmbB557
MELO3C007927Wax gourdmewgoB651
MELO3C007927Cucurbita moschata (Rifu)cmomeB793
MELO3C007927Melon (DHL92) v3.5.1memeB063
MELO3C007927Melon (DHL92) v3.5.1memeB145
MELO3C007927Melon (DHL92) v3.5.1memeB152
MELO3C007927Cucumber (Gy14) v1cgymeB026
MELO3C007927Cucumber (Gy14) v1cgymeB534
MELO3C007927Cucurbita maxima (Rimu)cmameB187
MELO3C007927Cucurbita maxima (Rimu)cmameB617
MELO3C007927Cucurbita maxima (Rimu)cmameB809
MELO3C007927Cucurbita moschata (Rifu)cmomeB174
MELO3C007927Cucurbita moschata (Rifu)cmomeB512
MELO3C007927Cucurbita moschata (Rifu)cmomeB605
MELO3C007927Cucurbita moschata (Rifu)cmomeB732
MELO3C007927Wild cucumber (PI 183967)cpimeB152
MELO3C007927Wild cucumber (PI 183967)cpimeB258
MELO3C007927Wild cucumber (PI 183967)cpimeB508
MELO3C007927Cucumber (Chinese Long) v2cumeB154
MELO3C007927Cucumber (Chinese Long) v2cumeB262
MELO3C007927Cucumber (Chinese Long) v2cumeB503
MELO3C007927Watermelon (Charleston Gray)mewcgB509
MELO3C007927Watermelon (Charleston Gray)mewcgB514
MELO3C007927Watermelon (Charleston Gray)mewcgB520
MELO3C007927Watermelon (Charleston Gray)mewcgB547
MELO3C007927Watermelon (97103) v1mewmB555
MELO3C007927Watermelon (97103) v1mewmB561
MELO3C007927Watermelon (97103) v1mewmB570
MELO3C007927Cucurbita pepo (Zucchini)cpemeB060
MELO3C007927Cucurbita pepo (Zucchini)cpemeB206
MELO3C007927Cucurbita pepo (Zucchini)cpemeB280
MELO3C007927Cucurbita pepo (Zucchini)cpemeB449
MELO3C007927Bottle gourd (USVL1VR-Ls)lsimeB077
MELO3C007927Bottle gourd (USVL1VR-Ls)lsimeB156
MELO3C007927Bottle gourd (USVL1VR-Ls)lsimeB331
MELO3C007927Bottle gourd (USVL1VR-Ls)lsimeB459
MELO3C007927Bottle gourd (USVL1VR-Ls)lsimeB494