MELO3C006979T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006979T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	En/Spm-like transposon protein, putative
Location	chr6 : 8000635 .. 8000984 (+)
Sequence length	267

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGATTGTGGAGAGTTGGAAAATCACGAATGGTGAAACAAATTCAATCAACCTCCAACAACAAAGAGCTTAGTAAAATGAAGTCATCCAATATACAATCTACGCAAGATTGGATGGACTTTGTGAAAGAAAAGAAGAGTGCACGGTTCAAGGTAAGTCAATGCAGCCATTTGTTTTAAAAGACACATATAAGTACAATTTATGTTTGATGATTAATCCATTTGTGTTTGATTAGGCTGAAAGTGCAAAGTTCAAATCAATGAAGAAGAGGCAACTTCCACATACATGTAGCTGTAAAGGTTATGCTCGACTGGCGGAAGATTTGGTATTCATTATTCTAAAGTAA

mRNA sequence

ATGGGAAGATTGTGGAGAGTTGGAAAATCACGAATGGTGAAACAAATTCAATCAACCTCCAACAACAAAGAGCTTAGTAAAATGAAGTCATCCAATATACAATCTACGCAAGATTGGATGGACTTTGTGAAAGAAAAGAAGAGTGCACGGTTCAAGGCTGAAAGTGCAAAGTTCAAATCAATGAAGAAGAGGCAACTTCCACATACATGTAGCTGTAAAGGTTATGCTCGACTGGCGGAAGATTTGGTATTCATTATTCTAAAGTAA

Coding sequence (CDS)

ATGGGAAGATTGTGGAGAGTTGGAAAATCACGAATGGTGAAACAAATTCAATCAACCTCCAACAACAAAGAGCTTAGTAAAATGAAGTCATCCAATATACAATCTACGCAAGATTGGATGGACTTTGTGAAAGAAAAGAAGAGTGCACGGTTCAAGGCTGAAAGTGCAAAGTTCAAATCAATGAAGAAGAGGCAACTTCCACATACATGTAGCTGTAAAGGTTATGCTCGACTGGCGGAAGATTTGGTATTCATTATTCTAAAGTAA

Protein sequence

MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKSMKKRQLPHTCSCKGYARLAEDLVFIILK*

Homology

[Close]

BLAST of MELO3C006979T1 vs. TrEMBL
Match: A0A0A0L5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.1e-29
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS N+EL KMK SN+QS  DWMDFVKEKKSA FKA+S KFKS
Sbjct: 571 MGRLWRAGKSRIVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKS 630

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MKK QLPHTCS KGYARLAE++
Sbjct: 631 MKKMQLPHTCSRKGYARLAEEM 652

[Close]

BLAST of MELO3C006979T1 vs. TrEMBL
Match: A0A0A0L5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.0e-13
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS ++EL KMK SNI+S  DWM+FVKEKKSA FK +     S
Sbjct: 909 MGRLWRAGKSRIVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKKKGCPDSS 968

Query: 61  MKKR 65
              R
Sbjct: 969 SVSR 972

HSP 2 Score: 35.0 bits (79), Expect = 5.5e+01
Identity = 21/48 (43.75%), Postives = 26/48 (54.17%), Query Frame = 1


Query: 38  DWMDFVKEKKS---ARFKAESAKFKSMKKRQLPHTCSCKGYARLAEDL 83
           DW       K       +A+S KFKSMK+ QLP T   K Y RLAE++
Sbjct: 296 DWRKLSTRSKEILWTSIQAKSEKFKSMKEMQLPST-RRKSYTRLAEEM 342

HSP 3 Score: 94.7 bits (234), Expect = 5.9e-17
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MG LWR  KSR+V +I+   N +E  K++  NI+S  DW  FV+EK SA FKA+S +F+ 
Sbjct: 443 MGNLWRSSKSRLVNKIREVPNEEERLKLRPKNIKSEADWKAFVREKTSAEFKAKSDRFRE 502

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           M+K+ +PHTCS KGYARL +++
Sbjct: 503 MRKKLVPHTCSRKGYARLVDEM 524

[Close]

BLAST of MELO3C006979T1 vs. TrEMBL
Match: Q9C6V0_ARATH (En/Spm-like transposon protein, putative OS=Arabidopsis thaliana GN=F27M3_21 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-11
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 1    MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
            MG LWR  KSR VK I    NN++   ++  NI S  +W  FVK K SA FK  S K+K 
Sbjct: 996  MGSLWRSYKSRTVKDINLAPNNQQKMNLRPMNI-SPIEWRKFVKIKTSAAFKVVSDKYKE 1055

Query: 61   MKKRQLPHTCSCKGYARLAEDL 83
             ++ Q+PHT S KG  RLAED+
Sbjct: 1056 RRRNQIPHTTSRKGMVRLAEDM 1076

[Close]

BLAST of MELO3C006979T1 vs. TrEMBL
Match: Q9LH86_ARATH (En/Spm transposon protein-like OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-09
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 1    MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
            MG +WR  KS++  +++   +  +L  +K SNIQS   W  +VK +K+  FK  S K++ 
Sbjct: 1007 MGCVWRSSKSKLTTKVRVVKSKADLLSLKPSNIQSVTAWNSWVKNRKTTAFKEISDKYRM 1066

Query: 61   MKKRQLPHTCSCKGYARLAEDL 83
            ++K Q+PHT S KG   LA ++
Sbjct: 1067 LRKAQIPHTTSRKGMISLAHEM 1088

[Close]

BLAST of MELO3C006979T1 vs. TrEMBL
Match: A0A0D2ZQ01_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-08
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           +G LWR GKS++V Q+++     E   +K  N+ S   W  +V+ K +  F   S ++K 
Sbjct: 225 LGSLWRAGKSKLVSQVRAAKTAAERLDLKPINVPSIHLWNSWVRSKTTTTFTEISNRYKE 284

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           ++K Q+PHT S K   RLA D+
Sbjct: 285 LRKNQIPHTTSRKRMLRLAYDM 306

[Close]

BLAST of MELO3C006979T1 vs. NCBI nr
Match: gi|778676496|ref|XP_011650597.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X7 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 7.4e-29
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS N+EL KMK SN+QS  DWMDFVKEKKSA FKA+S KFKS
Sbjct: 537 MGRLWRAGKSRIVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKS 596

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MKK QLPHTCS KGYARLAE++
Sbjct: 597 MKKMQLPHTCSRKGYARLAEEM 618

[Close]

BLAST of MELO3C006979T1 vs. NCBI nr
Match: gi|778676496|ref|XP_011650597.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X7 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 4.8e-28
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS ++EL KMK SNI+S  DWM+FVKEKKSA FKA+S KFKS
Sbjct: 875 MGRLWRAGKSRIVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKAKSEKFKS 934

Query: 61  MKKRQLPHTCSCKGYARLAEDLV 84
           MKK+QLPHTCS KGYARLAE+++
Sbjct: 935 MKKKQLPHTCSRKGYARLAEEMI 957

HSP 2 Score: 111.7 bits (278), Expect = 6.7e-22
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR  KSR++ QIQSTS N+EL KMK SNIQS  DWM+FVKEKKS RFKA+S KFKS
Sbjct: 228 MGRLWRAEKSRILSQIQSTSTNEELVKMKPSNIQSVHDWMEFVKEKKSTRFKAKSEKFKS 287

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MK+ QLP T   K Y RLAE++
Sbjct: 288 MKEMQLPST-RRKSYTRLAEEM 308

HSP 3 Score: 134.8 bits (338), Expect = 7.4e-29
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS N+EL KMK SN+QS  DWMDFVKEKKSA FKA+S KFKS
Sbjct: 571 MGRLWRAGKSRIVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKS 630

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MKK QLPHTCS KGYARLAE++
Sbjct: 631 MKKMQLPHTCSRKGYARLAEEM 652

[Close]

BLAST of MELO3C006979T1 vs. NCBI nr
Match: gi|700201166|gb|KGN56299.1| (hypothetical protein Csa_3G113900 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-13
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS ++EL KMK SNI+S  DWM+FVKEKKSA FK +     S
Sbjct: 909 MGRLWRAGKSRIVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKKKGCPDSS 968

Query: 61  MKKR 65
              R
Sbjct: 969 SVSR 972

HSP 2 Score: 35.0 bits (79), Expect = 7.9e+01
Identity = 21/48 (43.75%), Postives = 26/48 (54.17%), Query Frame = 1


Query: 38  DWMDFVKEKKS---ARFKAESAKFKSMKKRQLPHTCSCKGYARLAEDL 83
           DW       K       +A+S KFKSMK+ QLP T   K Y RLAE++
Sbjct: 296 DWRKLSTRSKEILWTSIQAKSEKFKSMKEMQLPST-RRKSYTRLAEEM 342

HSP 3 Score: 134.8 bits (338), Expect = 7.4e-29
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS N+EL KMK SN+QS  DWMDFVKEKKSA FKA+S KFKS
Sbjct: 534 MGRLWRAGKSRIVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKS 593

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MKK QLPHTCS KGYARLAE++
Sbjct: 594 MKKMQLPHTCSRKGYARLAEEM 615

[Close]

BLAST of MELO3C006979T1 vs. NCBI nr
Match: gi|778676482|ref|XP_011650591.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X2 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS ++EL KMK SNI+S  DWM+FVKEKKSA FKA+S KFKS
Sbjct: 872 MGRLWRAGKSRIVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKAKSEKFKS 931

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MKK+QLPHTCS KGYARLAE++
Sbjct: 932 MKKKQLPHTCSRKGYARLAEEM 953

HSP 2 Score: 111.7 bits (278), Expect = 6.7e-22
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR  KSR++ QIQSTS N+EL KMK SNIQS  DWM+FVKEKKS RFKA+S KFKS
Sbjct: 228 MGRLWRAEKSRILSQIQSTSTNEELVKMKPSNIQSVHDWMEFVKEKKSTRFKAKSEKFKS 287

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MK+ QLP T   K Y RLAE++
Sbjct: 288 MKEMQLPST-RRKSYTRLAEEM 308

HSP 3 Score: 134.8 bits (338), Expect = 7.4e-29
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS N+EL KMK SN+QS  DWMDFVKEKKSA FKA+S KFKS
Sbjct: 537 MGRLWRAGKSRIVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKS 596

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MKK QLPHTCS KGYARLAE++
Sbjct: 597 MKKMQLPHTCSRKGYARLAEEM 618

[Close]

BLAST of MELO3C006979T1 vs. NCBI nr
Match: gi|778676487|ref|XP_011650593.1| (PREDICTED: uncharacterized protein LOC101217008 isoform X4 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS ++EL KMK SNI+S  DWM+FVKEKKSA FKA+S KFKS
Sbjct: 875 MGRLWRAGKSRIVSQIQSTSTSEELVKMKPSNIKSMHDWMNFVKEKKSAMFKAKSEKFKS 934

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MKK+QLPHTCS KGYARLAE++
Sbjct: 935 MKKKQLPHTCSRKGYARLAEEM 956

HSP 2 Score: 111.7 bits (278), Expect = 6.7e-22
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR  KSR++ QIQSTS N+EL KMK SNIQS  DWM+FVKEKKS RFKA+S KFKS
Sbjct: 228 MGRLWRAEKSRILSQIQSTSTNEELVKMKPSNIQSVHDWMEFVKEKKSTRFKAKSEKFKS 287

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MK+ QLP T   K Y RLAE++
Sbjct: 288 MKEMQLPST-RRKSYTRLAEEM 308

HSP 3 Score: 134.8 bits (338), Expect = 7.4e-29
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 1   MGRLWRVGKSRMVKQIQSTSNNKELSKMKSSNIQSTQDWMDFVKEKKSARFKAESAKFKS 60
           MGRLWR GKSR+V QIQSTS N+EL KMK SN+QS  DWMDFVKEKKSA FKA+S KFKS
Sbjct: 537 MGRLWRAGKSRIVSQIQSTSTNEELVKMKPSNVQSMHDWMDFVKEKKSATFKAKSEKFKS 596

Query: 61  MKKRQLPHTCSCKGYARLAEDL 83
           MKK QLPHTCS KGYARLAE++
Sbjct: 597 MKKMQLPHTCSRKGYARLAEEM 618

The following BLAST results are available for this feature:

BLAST of MELO3C006979T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5I2_CUCSA	5.1e-29	79.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1	[more]
A0A0A0L5I2_CUCSA	3.0e-13	64.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G113900 PE=4 SV=1	[more]
Q9C6V0_ARATH	3.7e-11	48.78	En/Spm-like transposon protein, putative OS=Arabidopsis thaliana GN=F27M3_21 PE=...	[more]
Q9LH86_ARATH	3.5e-09	37.80	En/Spm transposon protein-like OS=Arabidopsis thaliana PE=4 SV=1	[more]
A0A0D2ZQ01_BRAOL	5.0e-08	36.59	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of MELO3C006979T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676496\|ref\|XP_011650597.1\|	7.4e-29	79.27	PREDICTED: uncharacterized protein LOC101217008 isoform X7 [Cucumis sativus]	[more]
gi\|778676496\|ref\|XP_011650597.1\|	4.8e-28	75.90	PREDICTED: uncharacterized protein LOC101217008 isoform X7 [Cucumis sativus]	[more]
gi\|700201166\|gb\|KGN56299.1\|	4.3e-13	64.06	hypothetical protein Csa_3G113900 [Cucumis sativus]	[more]
gi\|778676482\|ref\|XP_011650591.1\|	1.1e-27	76.83	PREDICTED: uncharacterized protein LOC101217008 isoform X2 [Cucumis sativus]	[more]
gi\|778676487\|ref\|XP_011650593.1\|	1.1e-27	76.83	PREDICTED: uncharacterized protein LOC101217008 isoform X4 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C006979	MELO3C006979	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C006979T1	MELO3C006979T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C006979T1.cds1	MELO3C006979T1.cds1	CDS
MELO3C006979T1.cds2	MELO3C006979T1.cds2	CDS